RLG00000004834

Divergent CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016844
Physical Location & Seq
Forward (+)
62873695 .. 62876355
2661 bp
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UTR
Exon/CDS
Intron
RLM00000004834

Sequence Viewer

Length: 798 bp
ATGTCTTGCAGCACTGCTATTATAACCACCATAGAGAACAACCATACAAATGATGATGCACTATCTAATTCTTGTTTTCAAACCCTAGATGACCATCAAGGAAATAGTAGCTTAAGATCATCAAGAAATGACAGTATATCTGAGAGTGTTTGGTTCTTCAAAAAATATCTGTTGACAAAAAATCAAAACAACATGGATACTAAAATAAATGTGGAAATTAATAGCAAATTAGAGTTCCCTTGGAATAACTTCCGACGACCCCCGTCTCTGCTAGAGCAAGTGTTACTTCCACAGCTACAATCATGTGGTGAAGTAGAAGCAACTCCATCAAACGACAAGACGTCAAAACAACTCACAATATTCTTCAATGGGGTTATCAATGTCTACGACAACATTCCTGTAGATAAGGCTCAAGCGATTATGCGTCCAGCTGGTGAAAGCTCATCACTGAAACCGGTGGTTGCAGAAAGGCCAAAGCCAGATGTGAGAAAACCATCTAACAAATCAAAGTTACGATCGGTTTCCAAGTTAAGAGCAGGAATACCTATGGCAAGAAGATACTCTCTGCAATGTTTTATTGAAAAGCGTAGGGACAGAAAAGTACCACTAGACCAATGGTTAGTAGGATCATCAGCAAATCACCTTAATGCCCTTCCAAGAGAAAAGCAGGCGGAGGAGGATAATGAGGCTAACAAGGGGAAGGGATTGAATGAAGAAAATCGGAGACTGCTTCCTGACCTTTCACCTTTCCCTTCACGTTTAGGCTACTTTTCTCTCAATTCATCTCATCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CCT_2 tify

Protein Analysis

266

Amino Acids

29.95

Weight (kDa)

9.24

Isoelectric Point (pI)

61.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 114 - 145 7.9e-13 tify domain
Jas_motif PF09425 182 - 199 1.1e-06 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016844)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11290
malus_domestica MD15G1434400.v1.1
prunus_persica Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1
pyrus_communis pycom15g38350
rosa_laevigata RLG00000004834
rosa_roxburghii Rroxscaffold_3G00268040
rosa_rugosa Rorug06G0475200
rosa_samantha Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900
rosa_wichuraiana Rw7G006890 Rw7G007110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AatII GACGTC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 671
AclWI GGATC 1 cut(s) 634
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 1 cut(s) 603
AflII CTTAAG 1 cut(s) 112
AgeI ACCGGT 1 cut(s) 454
AgsI TTSAA 5 cut(s) 80, 160, 367, 581, 709
AhdI GACNNNNNGTC 1 cut(s) 340
AluBI AGCT 4 cut(s) 111, 295, 431, 441
AluI AGCT 4 cut(s) 111, 295, 431, 441
Alw26I GTCTC 2 cut(s) 270, 718
AlwI GGATC 1 cut(s) 634
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 9
AseI ATTAAT 1 cut(s) 219
AsiGI ACCGGT 1 cut(s) 454
Asp700I GAANNNNTTC 1 cut(s) 248
AsuHPI GGTGA 4 cut(s) 320, 446, 632, 735
BbvI GCAGC 1 cut(s) 21
BccI CCATC 3 cut(s) 102, 334, 502
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 270, 718
BfaI CTAG 3 cut(s) 86, 272, 608
BfmI CTRYAG 1 cut(s) 399
BfrI CTTAAG 1 cut(s) 112
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
BmeRI GACNNNNNGTC 1 cut(s) 340
BmsI GCATC 1 cut(s) 46
BoxI GACNNNNGTC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 454
Bse118I RCCGGY 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 239
BseJI GATNNNNATC 1 cut(s) 93
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 689
BseXI GCAGC 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 1 cut(s) 472
BshTI ACCGGT 1 cut(s) 454
BsiEI CGRYCG 1 cut(s) 518
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 605
BsmAI GTCTC 2 cut(s) 270, 718
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 1 cut(s) 472
Bsp143I GATC 3 cut(s) 116, 515, 626
BspACI CCGC 1 cut(s) 671
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 634
BspTI CTTAAG 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 575
BsrFI RCCGGY 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 3 cut(s) 116, 515, 626
BssNI GRCGYC 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 341
BstAFI CTTAAG 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 1 cut(s) 141
BstKTI GATC 3 cut(s) 119, 518, 629
BstMAI GTCTC 2 cut(s) 270, 718
BstMBI GATC 3 cut(s) 116, 515, 626
BstMCI CGRYCG 1 cut(s) 518
BstPAI GACNNNNGTC 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 21
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 472
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 446
Cac8I GCNNGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 454
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 602
CspAI ACCGGT 1 cut(s) 454
CviAII CATG 2 cut(s) 193, 303
CviQI GTAC 1 cut(s) 602
DdeI CTNAG 1 cut(s) 141
DpnI GATC 3 cut(s) 118, 517, 628
DpnII GATC 3 cut(s) 116, 515, 626
DriI GACNNNNNGTC 1 cut(s) 340
Eam1105I GACNNNNNGTC 1 cut(s) 340
EciI GGCGGA 1 cut(s) 686
Eco130I CCWWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 2 cut(s) 196, 306
FaiI YATR 8 cut(s) 23, 32, 45, 137, 194, 304, 422, 548
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 1 cut(s) 605
FatI CATG 2 cut(s) 192, 302
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 3 cut(s) 86, 272, 608
GluI GCNGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 472
HapII CCGG 1 cut(s) 455
HgaI GACGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 2 cut(s) 196, 306
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HpaII CCGG 1 cut(s) 455
HphI GGTGA 4 cut(s) 320, 446, 632, 735
Hpy166II GTNNAC 2 cut(s) 174, 385
Hpy188I TCNGA 3 cut(s) 142, 254, 723
Hpy188III TCNNGA 2 cut(s) 123, 734
Hpy8I GTNNAC 2 cut(s) 174, 385
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 3 cut(s) 662, 694, 762
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 2 cut(s) 341, 757
HpyCH4V TGCA 4 cut(s) 9, 59, 464, 568
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 2 cut(s) 341, 757
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 2 cut(s) 196, 306
Kzo9I GATC 3 cut(s) 116, 515, 626
LpnPI CCDG 8 cut(s) 411, 417, 441, 468, 492, 522, 653, 747
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 1 cut(s) 46
MaeI CTAG 3 cut(s) 86, 272, 608
MaeII ACGT 2 cut(s) 341, 757
MaeIII GTNAC 2 cut(s) 282, 510
MalI GATC 3 cut(s) 118, 517, 628
MboI GATC 3 cut(s) 116, 515, 626
MboII GAAGA 4 cut(s) 148, 355, 567, 725
MluCI AATT 4 cut(s) 67, 216, 227, 778
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 3 cut(s) 667, 670, 679
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 4 cut(s) 113, 219, 530, 645
MslI CAYNNNNRTG 2 cut(s) 48, 645
MspA1I CMGCKG 1 cut(s) 431
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 1 cut(s) 455
NdeII GATC 3 cut(s) 116, 515, 626
NlaIII CATG 2 cut(s) 196, 306
PdmI GAANNNNTTC 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 454
PkrI GCNGC 1 cut(s) 11
Ple19I CGATCG 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 23
PvuI CGATCG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
RseI CAYNNNNRTG 2 cut(s) 48, 645
SaqAI TTAA 4 cut(s) 113, 219, 530, 645
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 3 cut(s) 116, 515, 626
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 399
SmiMI CAYNNNNRTG 2 cut(s) 48, 645
SmlI CTYRAG 2 cut(s) 112, 411
SmoI CTYRAG 2 cut(s) 112, 411
Sse9I AATT 4 cut(s) 67, 216, 227, 778
SsiI CCGC 1 cut(s) 671
SspI AATATT 1 cut(s) 360
SspMI CTAG 3 cut(s) 86, 272, 608
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 2 cut(s) 344, 760
TasI AATT 4 cut(s) 67, 216, 227, 778
Tru1I TTAA 4 cut(s) 113, 219, 530, 645
Tru9I TTAA 4 cut(s) 113, 219, 530, 645
TscAI CASTG 2 cut(s) 19, 453
TseI GCWGC 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 726, 771
TspRI CASTG 2 cut(s) 19, 453
Vha464I CTTAAG 1 cut(s) 112
VspI ATTAAT 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 3 cut(s) 86, 272, 608
ZraI GACGTC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.