Rh7DG082900

Divergent CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016844
Physical Location & Seq
Reverse (-)
6621214 .. 6622449
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG082900.1

Sequence Viewer

Length: 600 bp
ATGTCTTGCTGCACTGCTATTATAACCACCATAGAGAACAACCATACAAATGATGATGCACTATCTAATTCTTGTTTTCAAACCCTAGATGACCAGCAAAGAAATAGTAGCTTAAGATCATCAAGAAATGACAGTATATCTGAGAGTGTTTGGTTCTTCAAAAAATATCTGTTGACAAAAAATCAAAACAACATGGATGCTAAAATAAATGTGGAAATTAATCGCAAATTAGAGCTCCCTTGGAATAACTTCCGACGACCCCCGTCTCTGCTAGAGCAAGTGTTGCTTCCACAACTACAATCATGTGGTGAAGTAGAAGCAACTCCATCAAACGACAAGACGTCAAAACAACTCACAATATTCTTCAATGGGGTTATCAATGTCTACGACAACATTCCTGTAGATAAGGCTCAAGCGATTATGCGTCTAGCTGGTGAAAGCTCATTACTGAAACCTGTGGTTGCAGAAAGGCCAAAGCCAAATGTGAGAAAACCATCTAACAAATCAAAGTTACGATCGGCTTCCAAGTTAAGAGCAGGAATACCTATGGCAAGTAGATACTCTCTGCAATGTTTTCTTGAAAAGCCTAGGGACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CCT_2 tify

Protein Analysis

199

Amino Acids

22.59

Weight (kDa)

9.48

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 114 - 145 1.1e-14 tify domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016844)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11290
malus_domestica MD15G1434400.v1.1
prunus_persica Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1
pyrus_communis pycom15g38350
rosa_laevigata RLG00000004834
rosa_roxburghii Rroxscaffold_3G00268040
rosa_rugosa Rorug06G0475200
rosa_samantha Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900
rosa_wichuraiana Rw7G006890 Rw7G007110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AatII GACGTC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 341
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 4 cut(s) 80, 160, 367, 581
AhdI GACNNNNNGTC 1 cut(s) 340
AluBI AGCT 4 cut(s) 111, 235, 431, 441
AluI AGCT 4 cut(s) 111, 235, 431, 441
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 270
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 9
AseI ATTAAT 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 248
AspA2I CCTAGG 1 cut(s) 587
AsuHPI GGTGA 2 cut(s) 320, 446
AvrII CCTAGG 1 cut(s) 587
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 2 cut(s) 334, 502
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 4 cut(s) 86, 272, 428, 588
BfmI CTRYAG 1 cut(s) 399
BfrI CTTAAG 1 cut(s) 112
BisI GCNGC 1 cut(s) 10
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 1 cut(s) 11
BmeRI GACNNNNNGTC 1 cut(s) 340
BmsI GCATC 2 cut(s) 46, 187
BoxI GACNNNNGTC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 239, 587
Bse3DI GCAATG 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 239, 587
BseGI GGATG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 1 cut(s) 472
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 270
BsmBI CGTCTC 1 cut(s) 270
BsnI GGCC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 116, 515
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 1 cut(s) 133
BspTI CTTAAG 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 575
BssECI CCNNGG 2 cut(s) 239, 587
BssMI GATC 2 cut(s) 116, 515
BssNI GRCGYC 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 239, 587
Bst4CI ACNGT 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 341
BstAFI CTTAAG 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 2 cut(s) 119, 518
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 116, 515
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstPAI GACNNNNGTC 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 399
BsuRI GGCC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
CseI GACGC 1 cut(s) 413
CviAII CATG 2 cut(s) 193, 303
CviJI RGCY 9 cut(s) 111, 235, 410, 431, 441, 472, 478, 521, 586
CviKI_1 RGCY 9 cut(s) 111, 235, 410, 431, 441, 472, 478, 521, 586
DdeI CTNAG 1 cut(s) 141
DpnI GATC 2 cut(s) 118, 517
DpnII GATC 2 cut(s) 116, 515
DriI GACNNNNNGTC 1 cut(s) 340
Eam1105I GACNNNNNGTC 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 239, 587
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 239, 587
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 2 cut(s) 239, 587
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 2 cut(s) 196, 306
FaiI YATR 8 cut(s) 23, 32, 45, 137, 194, 304, 422, 548
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 2 cut(s) 192, 302
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 4 cut(s) 86, 272, 428, 588
GluI GCNGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 472
HgaI GACGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 2 cut(s) 196, 306
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HphI GGTGA 2 cut(s) 320, 446
Hpy166II GTNNAC 2 cut(s) 174, 385
Hpy188I TCNGA 2 cut(s) 142, 254
Hpy188III TCNNGA 2 cut(s) 123, 578
Hpy8I GTNNAC 2 cut(s) 174, 385
Hpy99I CGWCG 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 12, 59, 464, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 341
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 2 cut(s) 196, 306
Kzo9I GATC 2 cut(s) 116, 515
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 6 cut(s) 107, 411, 417, 468, 522, 580
LweI GCATC 2 cut(s) 46, 187
MaeI CTAG 4 cut(s) 86, 272, 428, 588
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 510
MalI GATC 2 cut(s) 118, 517
MboI GATC 2 cut(s) 116, 515
MboII GAAGA 2 cut(s) 148, 355
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 3 cut(s) 67, 216, 227
MmeI TCCRAC 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 3 cut(s) 113, 219, 530
MslI CAYNNNNRTG 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 2 cut(s) 116, 515
NlaIII CATG 2 cut(s) 196, 306
PdmI GAANNNNTTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 11
Ple19I CGATCG 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 237
PvuI CGATCG 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 113, 219, 530
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 116, 515
SduI GDGCHC 1 cut(s) 237
SetI ASST 8 cut(s) 113, 237, 344, 433, 443, 457, 547, 599
SfaNI GCATC 2 cut(s) 46, 187
SfcI CTRYAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 2 cut(s) 112, 411
SmoI CTYRAG 2 cut(s) 112, 411
Sse9I AATT 3 cut(s) 67, 216, 227
SspI AATATT 1 cut(s) 360
SspMI CTAG 4 cut(s) 86, 272, 428, 588
SstI GAGCTC 1 cut(s) 237
StyI CCWWGG 2 cut(s) 239, 587
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 344
TasI AATT 3 cut(s) 67, 216, 227
Tru1I TTAA 3 cut(s) 113, 219, 530
Tru9I TTAA 3 cut(s) 113, 219, 530
TscAI CASTG 1 cut(s) 19
TseI GCWGC 1 cut(s) 9
TspRI CASTG 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 112
VspI ATTAAT 1 cut(s) 219
XmaJI CCTAGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 4 cut(s) 86, 272, 428, 588
ZraI GACGTC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.