MD15G1434400.v1.1

Divergent CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016844
Physical Location & Seq
Forward (+)
53470255 .. 53474071
3817 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1434400.v1.1.491

Sequence Viewer

Length: 810 bp
ATGAAGACAGAAAACAATAACTCATCAGATATCCAAGAATTCTTCGAAGATCAGAAGAAGAAAAATCGTGCAATAATTTCCAATGCTGCTGGTTTTGATGGTGAAAAAGGTGCAAGTACCCCAAATGACTGCCAGCAAGAAAACAGCAGCTTAAAACCATCGAATGATATGTCTTGGTTGTTCAGAAAATATCTTTTTACAAGAAGTCATAGTAATAGCACTGGTAAATCCAACACGGAAGCTGAATCTGAATCAGAAATTGTCAAAAGGCATTCATCACCCGGCCCTTCAGTACCACCTATGCTTCTTGGTAGTAATGATTTTCGAGGAGACCGGCTGTCTTTGCTAGAGCGAAAGCTTCTTCCGGGGTTGCGATGTGGTGATCAATCCAACAAGACTTCTACAACAGAGCAACTTACAATATTTTACAATGGGATTGTCCATGTCTATGATGATATTCCTGCTGATAAGGCAAAAGAGATTCTGTGTCTTGCTAGTGAAAACTCATCGTCCAAACCTCTTATACGAGAAAGGTTAAAGAAGGCACCACCACCTCTTAGACCGCAATTATCAGTTTCTAAACTAAGAGCAGGGATTCCAATGGCAAGGAGACATTCCCTGCAATGTTTTCTTGAAAAGCGTCGTGGCAGGATCATCAACAAATATCCTTATGCCCTTCATCCTGGAAAACAAGAGGACAATGAGGCATTCATAAACAACCAGTCAAATGAAAATCATAAAATTTCTCTTTCACCTTTCCCTTCACGTTTAGGGTATTTTTATCCTAAATTATTTAACCAAGGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CCT_2 tify

Protein Analysis

270

Amino Acids

30.35

Weight (kDa)

9.37

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 135 - 166 2e-15 tify domain
Jas_motif PF09425 200 - 224 3.4e-12 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016844)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11290
malus_domestica MD15G1434400.v1.1
prunus_persica Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1
pyrus_communis pycom15g38350
rosa_laevigata RLG00000004834
rosa_roxburghii Rroxscaffold_3G00268040
rosa_rugosa Rorug06G0475200
rosa_samantha Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900
rosa_wichuraiana Rw7G006890 Rw7G007110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 544
AciI CCGC 1 cut(s) 563
AclWI GGATC 1 cut(s) 659
AcsI RAATTY 2 cut(s) 38, 741
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 118, 294
AgsI TTSAA 1 cut(s) 635
AhdI GACNNNNNGTC 1 cut(s) 337
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 3 cut(s) 150, 242, 358
AluI AGCT 3 cut(s) 150, 242, 358
Alw26I GTCTC 2 cut(s) 324, 604
AlwI GGATC 1 cut(s) 659
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 86, 147
ApoI RAATTY 2 cut(s) 38, 741
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 2 cut(s) 282, 366
AsuHPI GGTGA 4 cut(s) 113, 270, 392, 744
AsuII TTCGAA 1 cut(s) 45
BanI GGYRCC 1 cut(s) 544
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 73, 159
BccI CCATC 2 cut(s) 92, 166
BciT130I CCWGG 1 cut(s) 684
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 2 cut(s) 282, 366
BcoDI GTCTC 2 cut(s) 324, 604
BfaI CTAG 2 cut(s) 347, 495
BisI GCNGC 2 cut(s) 87, 148
BlsI GCNGC 2 cut(s) 88, 149
Bme1390I CCNGG 3 cut(s) 282, 366, 684
BmeRI GACNNNNNGTC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 3 cut(s) 282, 366, 684
BpiI GAAGAC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 282, 366
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 365, 799
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 226, 721
Bse3DI GCAATG 1 cut(s) 629
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 365, 799
BseGI GGATG 1 cut(s) 679
BseMI GCAATG 1 cut(s) 629
BseNI ACTGG 2 cut(s) 226, 721
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 2 cut(s) 73, 159
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 544
BsiSI CCGG 3 cut(s) 282, 334, 365
BsmAI GTCTC 2 cut(s) 324, 604
BsmI GAATGC 2 cut(s) 271, 707
BsnI GGCC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 324
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 3 cut(s) 49, 382, 651
BspACI CCGC 1 cut(s) 563
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 546
BspPI GGATC 1 cut(s) 659
BspT104I TTCGAA 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 544
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 333
BsrI ACTGG 2 cut(s) 226, 721
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 365, 799
BssMI GATC 3 cut(s) 49, 382, 651
BssT1I CCWWGG 1 cut(s) 799
Bst2UI CCWGG 1 cut(s) 684
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 557, 584
BstF5I GGATG 1 cut(s) 679
BstKTI GATC 3 cut(s) 52, 385, 654
BstMAI GTCTC 2 cut(s) 324, 604
BstMBI GATC 3 cut(s) 49, 382, 651
BstMWI GCNNNNNNNGC 2 cut(s) 343, 470
BstNI CCWGG 1 cut(s) 684
BstSCI CCNGG 3 cut(s) 280, 364, 682
BstV1I GCAGC 2 cut(s) 73, 159
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 388
BtsCI GGATG 1 cut(s) 679
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 629
Csp6I GTAC 2 cut(s) 117, 293
CviAII CATG 1 cut(s) 443
CviJI RGCY 5 cut(s) 150, 242, 285, 337, 358
CviKI_1 RGCY 5 cut(s) 150, 242, 285, 337, 358
CviQI GTAC 2 cut(s) 117, 293
DdeI CTNAG 2 cut(s) 557, 584
DpnI GATC 3 cut(s) 51, 384, 653
DpnII GATC 3 cut(s) 49, 382, 651
DriI GACNNNNNGTC 1 cut(s) 337
Eam1105I GACNNNNNGTC 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 799
Eco31I GGTCTC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 682
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 799
FaeI CATG 1 cut(s) 446
FaiI YATR 9 cut(s) 170, 210, 302, 444, 450, 524, 672, 713, 738
FatI CATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 87, 148
FokI GGATG 1 cut(s) 666
Fsp4HI GCNGC 2 cut(s) 87, 148
FspBI CTAG 2 cut(s) 347, 495
GluI GCNGC 2 cut(s) 87, 148
HaeIII GGCC 1 cut(s) 285
HapII CCGG 3 cut(s) 282, 334, 365
HgaI GACGC 1 cut(s) 629
Hin1II CATG 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 4 cut(s) 245, 251, 481, 595
HpaII CCGG 3 cut(s) 282, 334, 365
HphI GGTGA 4 cut(s) 113, 270, 392, 744
Hpy188I TCNGA 5 cut(s) 28, 54, 185, 250, 256
Hpy188III TCNNGA 1 cut(s) 632
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 4 cut(s) 297, 535, 686, 771
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 3 cut(s) 71, 113, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 470
HpyF3I CTNAG 2 cut(s) 557, 584
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 3 cut(s) 49, 382, 651
Lsp1109I GCAGC 2 cut(s) 73, 159
MaeI CTAG 2 cut(s) 347, 495
MaeII ACGT 1 cut(s) 766
MalI GATC 3 cut(s) 51, 384, 653
MboI GATC 3 cut(s) 49, 382, 651
MboII GAAGA 6 cut(s) 16, 34, 59, 67, 70, 353
MluCI AATT 6 cut(s) 38, 75, 258, 566, 741, 788
MmeI TCCRAC 2 cut(s) 255, 414
MnlI CCTC 5 cut(s) 320, 528, 564, 688, 697
MseI TTAA 4 cut(s) 152, 536, 795, 808
MslI CAYNNNNRTG 1 cut(s) 447
MspI CCGG 3 cut(s) 282, 334, 365
MspR9I CCNGG 3 cut(s) 282, 366, 684
Mva1269I GAATGC 2 cut(s) 271, 707
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 2 cut(s) 343, 470
NciI CCSGG 2 cut(s) 282, 366
NdeII GATC 3 cut(s) 49, 382, 651
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 1 cut(s) 546
NspV TTCGAA 1 cut(s) 45
PctI GAATGC 2 cut(s) 271, 707
PfeI GAWTC 4 cut(s) 245, 251, 481, 595
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 2 cut(s) 88, 149
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 2 cut(s) 118, 294
RsaNI GTAC 2 cut(s) 117, 293
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 4 cut(s) 152, 536, 795, 808
SatI GCNGC 2 cut(s) 87, 148
Sau3AI GATC 3 cut(s) 49, 382, 651
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 3 cut(s) 282, 366, 684
SfuI TTCGAA 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 447
Sse9I AATT 6 cut(s) 38, 75, 258, 566, 741, 788
SsiI CCGC 1 cut(s) 563
SspI AATATT 1 cut(s) 423
SspMI CTAG 2 cut(s) 347, 495
StyD4I CCNGG 3 cut(s) 280, 364, 682
StyI CCWWGG 1 cut(s) 799
TaiI ACGT 1 cut(s) 769
TaqI TCGA 3 cut(s) 45, 161, 325
TasI AATT 6 cut(s) 38, 75, 258, 566, 741, 788
TfiI GAWTC 4 cut(s) 245, 251, 481, 595
Tru1I TTAA 4 cut(s) 152, 536, 795, 808
Tru9I TTAA 4 cut(s) 152, 536, 795, 808
TscAI CASTG 1 cut(s) 226
TseI GCWGC 2 cut(s) 86, 147
TspDTI ATGAA 5 cut(s) 17, 264, 668, 700, 744
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 226
XapI RAATTY 2 cut(s) 38, 741
XspI CTAG 2 cut(s) 347, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.