FvH4_5g11720

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016846
Physical Location & Seq
Reverse (-)
6646178 .. 6649354
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11720.t1

Sequence Viewer

Length: 1245 bp
ATGTTGGGTACAAGATTACAGTTTGGGACTGTTAATCGTGGGGAGGACAGGTTTTACGTTGCTGGGAAAGCAAAGAAGAAATACAATCAGCAGCAAAAGCAGGCCAGGAAAGCAAAGAATGATGCAAACCAGAGCCCCAAAGAGAGCAAAGTTGCGGTTTTTGAGAACAAAGAGAGCAAAGTTGCGGTTTTTGAGAACAAAGAGAGTCAAAGTTCATTGGCAAAGCCTTGTTCTGATCCCACTTTGACGCCAAGGAGTAATCTTGACAGGTTTTTGGAGTCTACTACGCCTTCGGTTGCAGCCCAGTATTTCTCTAAGAAGACAATGAGGGGGTTGAGAACTTGTGATGTGGAGTTTCAACCTTACTTCGCTTTGAATGATCTTTGGGAATCGTTTAGGGAATGGAGTGCTTATGGGGCAGGAGTACCGTTAGTTCTTAACAAAAGTGATTCTGTTGTTCAATATTATGTTCCTTATCTATCTGGTATCCAATTATATGGTGAATCTGCTGTGAAGTCAAGTTCAAAGCAAAGGCAAGTTGGTGAGGACAATGATCCTGACTATTTGGATTCAAGTAGTGATGCAAGCAGTGACTCTGAAATTGAAAAACATATGAAGATTACTAGGGAGCAGCAGCATATTCTTCACCAATTAAACAGTGAGGTTTCGAGTAGAATGGGCAGATTATCCATACTTGATGAACACCCCGTATTGCAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGAATTCTCAAGGCTTGCTTTTCGAGTATCTTGAGCGGGATGCTCCATATGGCCGTGAACCATTAGCTGACAAGATATCTGATCTTGCGCGCAAGTACCCTAGGTTGAAAACCTTAAGAAGTTGTGACTTACTGCGAGGCAGTTGGATGTCAGTAGCTTGGTATCCCATATATCGAATACCTATGGGTCCAACGTTGAAAGATTTGGATGCTTGCTTTCTGACATATCATTCTCTTTCAACACCCATGACAGGTAGTGGGGGTGACCAAGCTCCAGTAATGGTGTATCCCAGTGAGATGGATGGCGTCCCAAATATTTCATTGCGTATTTTTGGATTGGCCTCGTATAAGCTCAAAGGATCCTTGTGGGCACAAAATGGATCAGAGTGTCAACTGGCCGATTCCCTGATGCAAGCTGCGGACAACTGGCTGAGCCTACTTCAGGTCAATCACCCTGATTTCCGGTTCTTTGCTTCACACGGCATGTACTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

415

Amino Acids

46.58

Weight (kDa)

6.42

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 86 - 406 3.6e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1230
Acc36I ACCTGC 1 cut(s) 1230
AccBSI CCGCTC 1 cut(s) 784
AccI GTMKAC 1 cut(s) 281
AccII CGCG 1 cut(s) 838
AciI CCGC 4 cut(s) 155, 185, 784, 1166
AclI AACGTT 1 cut(s) 941
AclWI GGATC 5 cut(s) 230, 548, 1101, 1114, 1135
AcoI YGGCCR 2 cut(s) 799, 1143
AcsI RAATTY 1 cut(s) 751
AcuI CTGAAG 1 cut(s) 1172
AcyI GRCGYC 2 cut(s) 248, 1053
AfaI GTAC 4 cut(s) 10, 426, 845, 1235
AfiI CCNNNNNNNGG 2 cut(s) 998, 1189
AflII CTTAAG 1 cut(s) 862
AgsI TTSAA 9 cut(s) 359, 376, 461, 525, 573, 605, 856, 946, 987
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 6 cut(s) 746, 815, 905, 1019, 1099, 1163
AluI AGCT 6 cut(s) 746, 815, 905, 1019, 1099, 1163
AlwI GGATC 5 cut(s) 230, 548, 1101, 1114, 1135
AoxI GGCC 4 cut(s) 102, 799, 1086, 1143
ApeKI GCWGC 5 cut(s) 91, 299, 631, 634, 1163
ApoI RAATTY 1 cut(s) 751
AspA2I CCTAGG 1 cut(s) 848
AspLEI GCGC 2 cut(s) 838, 840
AspS9I GGNCC 1 cut(s) 935
AsuHPI GGTGA 5 cut(s) 512, 554, 638, 1022, 1190
AvaII GGWCC 1 cut(s) 935
AvrII CCTAGG 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 1120
BamHI GGATCC 1 cut(s) 1106
BanII GRGCYC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 5 cut(s) 103, 311, 643, 646, 1150
BccI CCATC 3 cut(s) 731, 1039, 1043
BceAI ACGGC 2 cut(s) 786, 1243
BciT130I CCWGG 1 cut(s) 106
BciVI GTATCC 3 cut(s) 497, 921, 1044
BfaI CTAG 3 cut(s) 624, 729, 849
BfmI CTRYAG 1 cut(s) 1237
BfrI CTTAAG 1 cut(s) 862
BfuAI ACCTGC 1 cut(s) 1230
BfuI GTATCC 3 cut(s) 497, 921, 1044
BisI GCNGC 5 cut(s) 92, 300, 632, 635, 1164
BlnI CCTAGG 1 cut(s) 848
BlpI GCTNAGC 1 cut(s) 1178
BlsI GCNGC 5 cut(s) 93, 301, 633, 636, 1165
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 935
BmgT120I GGNCC 1 cut(s) 935
BmiI GGNNCC 2 cut(s) 936, 1108
BmrFI CCNGG 1 cut(s) 106
BmrI ACTGGG 2 cut(s) 298, 1032
BmsI GCATC 5 cut(s) 112, 571, 778, 946, 1146
BmuI ACTGGG 2 cut(s) 298, 1032
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 1005
Bpu1102I GCTNAGC 1 cut(s) 1178
BpuEI CTTGAG 2 cut(s) 741, 800
BsaHI GRCGYC 2 cut(s) 248, 1053
BsaJI CCNNGG 2 cut(s) 251, 848
BsaWI WCCGGW 1 cut(s) 1209
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 998, 1189
Bse1I ACTGG 5 cut(s) 304, 1022, 1038, 1146, 1178
Bse3DI GCAATG 1 cut(s) 1067
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 251, 848
BseGI GGATG 4 cut(s) 793, 900, 961, 1054
BseLI CCNNNNNNNGG 2 cut(s) 998, 1189
BseMI GCAATG 1 cut(s) 1067
BseMII CTCAG 1 cut(s) 1169
BseNI ACTGG 5 cut(s) 304, 1022, 1038, 1146, 1178
BsePI GCGCGC 1 cut(s) 836
BseSI GKGCMC 1 cut(s) 1120
BseXI GCAGC 5 cut(s) 103, 311, 643, 646, 1150
BseYI CCCAGC 2 cut(s) 62, 746
Bsh1236I CGCG 1 cut(s) 838
BshFI GGCC 4 cut(s) 104, 801, 1088, 1145
BsiSI CCGG 1 cut(s) 1210
BslFI GGGAC 2 cut(s) 40, 1040
BslI CCNNNNNNNGG 2 cut(s) 998, 1189
BsmFI GGGAC 2 cut(s) 40, 1040
BsnI GGCC 4 cut(s) 104, 801, 1088, 1145
Bsp1286I GDGCHC 2 cut(s) 137, 1120
Bsp143I GATC 6 cut(s) 235, 379, 553, 829, 1106, 1127
Bsp1720I GCTNAGC 1 cut(s) 1178
BspACI CCGC 4 cut(s) 155, 185, 784, 1166
BspANI GGCC 4 cut(s) 104, 801, 1088, 1145
BspCNI CTCAG 1 cut(s) 1170
BspFNI CGCG 1 cut(s) 838
BspLI GGNNCC 2 cut(s) 936, 1108
BspMAI CTGCAG 1 cut(s) 1241
BspMI ACCTGC 1 cut(s) 1230
BspPI GGATC 5 cut(s) 230, 548, 1101, 1114, 1135
BspTI CTTAAG 1 cut(s) 862
BsrBI CCGCTC 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 1067
BsrI ACTGG 5 cut(s) 304, 1022, 1038, 1146, 1178
BssECI CCNNGG 2 cut(s) 251, 848
BssHII GCGCGC 1 cut(s) 836
BssMI GATC 6 cut(s) 235, 379, 553, 829, 1106, 1127
BssNI GRCGYC 2 cut(s) 248, 1053
BssT1I CCWWGG 2 cut(s) 251, 848
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 4 cut(s) 21, 31, 429, 659
BstACI GRCGYC 2 cut(s) 248, 1053
BstAFI CTTAAG 1 cut(s) 862
BstAPI GCANNNNNTGC 1 cut(s) 1236
BstC8I GCNNGC 6 cut(s) 102, 586, 764, 838, 961, 1161
BstDEI CTNAG 2 cut(s) 315, 1178
BstEII GGTNACC 1 cut(s) 1010
BstENI CCTNNNNNAGG 1 cut(s) 1187
BstF5I GGATG 4 cut(s) 793, 900, 961, 1054
BstFNI CGCG 1 cut(s) 838
BstHHI GCGC 2 cut(s) 838, 840
BstKTI GATC 6 cut(s) 238, 382, 556, 832, 1109, 1130
BstMBI GATC 6 cut(s) 235, 379, 553, 829, 1106, 1127
BstMWI GCNNNNNNNGC 5 cut(s) 68, 97, 110, 416, 1236
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 1234
BstPI GGTNACC 1 cut(s) 1010
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 1237
BstSLI GKGCMC 1 cut(s) 1120
BstUI CGCG 1 cut(s) 838
BstV1I GCAGC 5 cut(s) 103, 311, 643, 646, 1150
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 1106
BstXI CCANNNNNNTGG 2 cut(s) 497, 1045
BstYI RGATCY 1 cut(s) 1106
BsuI GTATCC 3 cut(s) 497, 921, 1044
BsuRI GGCC 4 cut(s) 104, 801, 1088, 1145
BtsCI GGATG 4 cut(s) 793, 900, 961, 1054
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 3 cut(s) 595, 664, 1045
BveI ACCTGC 1 cut(s) 1230
Cac8I GCNNGC 6 cut(s) 102, 586, 764, 838, 961, 1161
CfoI GCGC 2 cut(s) 838, 840
Cfr13I GGNCC 1 cut(s) 935
CseI GACGC 2 cut(s) 256, 1042
Csp6I GTAC 4 cut(s) 9, 425, 844, 1234
CviAII CATG 2 cut(s) 994, 1231
CviQI GTAC 4 cut(s) 9, 425, 844, 1234
DdeI CTNAG 2 cut(s) 315, 1178
DpnI GATC 6 cut(s) 237, 381, 555, 831, 1108, 1129
DpnII GATC 6 cut(s) 235, 379, 553, 829, 1106, 1127
EaeI YGGCCR 2 cut(s) 799, 1143
Eco130I CCWWGG 2 cut(s) 251, 848
Eco24I GRGCYC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 935
Eco57I CTGAAG 1 cut(s) 1172
Eco91I GGTNACC 1 cut(s) 1010
EcoNI CCTNNNNNAGG 1 cut(s) 1187
EcoO65I GGTNACC 1 cut(s) 1010
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 825
EcoT14I CCWWGG 2 cut(s) 251, 848
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 251, 848
FaeI CATG 2 cut(s) 997, 1234
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 40, 1040
FatI CATG 2 cut(s) 993, 1230
FauI CCCGC 1 cut(s) 777
FauNDI CATATG 2 cut(s) 612, 796
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 5 cut(s) 92, 300, 632, 635, 1164
FokI GGATG 4 cut(s) 800, 907, 968, 1061
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 5 cut(s) 92, 300, 632, 635, 1164
FspBI CTAG 3 cut(s) 624, 729, 849
GlaI GCGC 2 cut(s) 837, 839
GluI GCNGC 5 cut(s) 92, 300, 632, 635, 1164
GsaI CCCAGC 2 cut(s) 66, 750
GsuI CTGGAG 1 cut(s) 1005
HaeIII GGCC 4 cut(s) 104, 801, 1088, 1145
HapII CCGG 1 cut(s) 1210
HgaI GACGC 2 cut(s) 256, 1042
HhaI GCGC 2 cut(s) 838, 840
Hin1I GRCGYC 2 cut(s) 248, 1053
Hin1II CATG 2 cut(s) 997, 1234
Hin6I GCGC 2 cut(s) 836, 838
HinP1I GCGC 2 cut(s) 836, 838
HincII GTYRAC 1 cut(s) 1139
HindII GTYRAC 1 cut(s) 1139
HinfI GANTC 8 cut(s) 205, 278, 389, 449, 503, 569, 593, 1148
HpaII CCGG 1 cut(s) 1210
HphI GGTGA 5 cut(s) 512, 554, 638, 1022, 1190
Hpy166II GTNNAC 3 cut(s) 282, 806, 1139
Hpy188I TCNGA 5 cut(s) 235, 598, 829, 969, 1132
Hpy188III TCNNGA 3 cut(s) 263, 557, 779
Hpy8I GTNNAC 3 cut(s) 282, 806, 1139
HpyAV CCTTC 2 cut(s) 300, 713
HpyCH4III ACNGT 4 cut(s) 21, 31, 429, 659
HpyCH4IV ACGT 2 cut(s) 57, 941
HpyCH4V TGCA 6 cut(s) 125, 299, 584, 715, 1159, 1239
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 97, 110, 416, 1236
HpyF3I CTNAG 2 cut(s) 315, 1178
HpySE526I ACGT 2 cut(s) 57, 941
Hsp92I GRCGYC 2 cut(s) 248, 1053
Hsp92II CATG 2 cut(s) 997, 1234
HspAI GCGC 2 cut(s) 836, 838
Kzo9I GATC 6 cut(s) 235, 379, 553, 829, 1106, 1127
LmnI GCTCC 3 cut(s) 628, 796, 1024
Lsp1109I GCAGC 5 cut(s) 103, 311, 643, 646, 1150
LweI GCATC 5 cut(s) 112, 571, 778, 946, 1146
MaeI CTAG 3 cut(s) 624, 729, 849
MaeII ACGT 2 cut(s) 57, 941
MaeIII GTNAC 3 cut(s) 590, 872, 1010
MalI GATC 6 cut(s) 237, 381, 555, 831, 1108, 1129
MbiI CCGCTC 1 cut(s) 784
MboI GATC 6 cut(s) 235, 379, 553, 829, 1106, 1127
MboII GAAGA 4 cut(s) 88, 331, 628, 635
MflI RGATCY 1 cut(s) 1106
MhlI GDGCHC 2 cut(s) 137, 1120
MluCI AATT 4 cut(s) 491, 600, 650, 751
MlyI GAGTC 3 cut(s) 214, 287, 587
MmeI TCCRAC 2 cut(s) 872, 962
MnlI CCTC 6 cut(s) 37, 321, 538, 655, 878, 1099
MseI TTAA 4 cut(s) 33, 438, 653, 863
MspCI CTTAAG 1 cut(s) 862
MspI CCGG 1 cut(s) 1210
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 838
MwoI GCNNNNNNNGC 5 cut(s) 68, 97, 110, 416, 1236
NdeI CATATG 2 cut(s) 612, 796
NdeII GATC 6 cut(s) 235, 379, 553, 829, 1106, 1127
NlaIII CATG 2 cut(s) 997, 1234
NlaIV GGNNCC 2 cut(s) 936, 1108
NmuCI GTSAC 3 cut(s) 590, 872, 1010
NspI RCATGY 1 cut(s) 1234
PaqCI CACCTGC 1 cut(s) 1230
PauI GCGCGC 1 cut(s) 836
PfeI GAWTC 5 cut(s) 389, 449, 503, 569, 1148
PkrI GCNGC 5 cut(s) 93, 301, 633, 636, 1165
PleI GAGTC 3 cut(s) 213, 286, 587
PpsI GAGTC 3 cut(s) 213, 286, 587
Psp1406I AACGTT 1 cut(s) 941
Psp6I CCWGG 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 1010
PspFI CCCAGC 2 cut(s) 62, 746
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 936, 1108
PspPI GGNCC 1 cut(s) 935
PsrI GAACNNNNNNTAC 2 cut(s) 417, 449
PstI CTGCAG 1 cut(s) 1241
PsuI RGATCY 1 cut(s) 1106
PteI GCGCGC 1 cut(s) 836
RsaI GTAC 4 cut(s) 10, 426, 845, 1235
RsaNI GTAC 4 cut(s) 9, 425, 844, 1234
SaqAI TTAA 4 cut(s) 33, 438, 653, 863
SatI GCNGC 5 cut(s) 92, 300, 632, 635, 1164
Sau3AI GATC 6 cut(s) 235, 379, 553, 829, 1106, 1127
Sau96I GGNCC 1 cut(s) 935
SchI GAGTC 3 cut(s) 214, 287, 587
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 2 cut(s) 137, 1120
SfaNI GCATC 5 cut(s) 112, 571, 778, 946, 1146
SfcI CTRYAG 1 cut(s) 1237
SinI GGWCC 1 cut(s) 935
SmlI CTYRAG 3 cut(s) 756, 779, 862
SmoI CTYRAG 3 cut(s) 756, 779, 862
Sse9I AATT 4 cut(s) 491, 600, 650, 751
SsiI CCGC 4 cut(s) 155, 185, 784, 1166
SspI AATATT 2 cut(s) 464, 1063
SspMI CTAG 3 cut(s) 624, 729, 849
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 2 cut(s) 251, 848
TaaI ACNGT 4 cut(s) 21, 31, 429, 659
TaiI ACGT 2 cut(s) 60, 944
TaqI TCGA 3 cut(s) 668, 771, 922
TasI AATT 4 cut(s) 491, 600, 650, 751
TatI WGTACW 1 cut(s) 1233
TfiI GAWTC 5 cut(s) 389, 449, 503, 569, 1148
Tru1I TTAA 4 cut(s) 33, 438, 653, 863
Tru9I TTAA 4 cut(s) 33, 438, 653, 863
TscAI CASTG 3 cut(s) 595, 664, 1045
TseFI GTSAC 3 cut(s) 590, 872, 1010
TseI GCWGC 5 cut(s) 91, 299, 631, 634, 1163
Tsp45I GTSAC 3 cut(s) 590, 872, 1010
TspDTI ATGAA 4 cut(s) 204, 629, 714, 1056
TspRI CASTG 3 cut(s) 595, 664, 1045
Vha464I CTTAAG 1 cut(s) 862
VpaK11BI GGWCC 1 cut(s) 935
XagI CCTNNNNNAGG 1 cut(s) 1187
XapI RAATTY 1 cut(s) 751
XceI RCATGY 1 cut(s) 1234
XmaJI CCTAGG 1 cut(s) 848
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 3 cut(s) 624, 729, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.