pycom06g19600

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016846
Physical Location & Seq
Forward (+)
22963238 .. 22966232
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g19600.3

Sequence Viewer

Length: 1188 bp
ATGTTGGGAAGTGGGTTGCAGTTCGGGAATGTTCGTGGGGAGGACAGGTTTTACATTCCTGTGAAAGCAAGGAAGAGATGCAACAATCAGCAGAAGCAAGCTCGGAGAGCCAGCAAGAACGATGCCAATGAGAGCCCCAAAGAGCATCAGAATTCATTGGCAAAGCCCTCTTTCGAGCGGTCTCTGACACCGACTAGCAATCTGGACAGGCTCTTGGAGTTCACCACTCCCTCTGTTCCTGCTCAGTATTTCTCAAAGACGACAATGAGGGGGCGGAGGACTTGTGATGTTGAGTTTGAGCCTTACTTCACACTGAATGATCTATGGGAATCGTTCAGGGAGTGGAGTGCATATGGGGCAGGAGTACCATTGGTCCTTAACAATTGTGATTCTGTTATTCAATACTATGTTCCGTATTTATCTGGTATCCAATTATATGGGGAATCTTCTGTGAAGTCAAATGCAAAGTCAAGGCAAGTGCGTGAGGACAATGATGTCGACAACTATTTAGATTCGAGTAGTGATGCAAGCAGTGATTATGAATTTGAGAAACACATAAAGGTTGCAAAGGAGCAGGGGATTCTTCACCATCTAAGCAGGGACATACCTACTAGAATGGGCAGTTTGTCCATACATGGTGAACACCCTGTATTACAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGAATTCTCGAGGTGTCCTGCTTTTTGAGTTTCTTGAGCAGGATGCTCCATATGGCCGTGAACCATTGGCTGACAAGGCTAGTCTTGCACACCAGTACCCTGGGTTAAAGACATTAAGAAGCTGTGACTTACTGCCAGGAAGTTGGATGTCAGTCGCTTGGTATCCCATATATCGAATACCTACGGGTCCAACATTGAAAGATTTAGATGCTTGCTTTTTGACATATCATTCACTTTCAACACCCATGACAGGTACTGGAAATAGCCCGGCTCCAGTGATGATCTATCCCAGTGAGATGGATGGTGTCCCAAGGATTTCCTTACCTGTTTTTGGACTGGCATCCTACAAGTTAAAAGGATCCCTGTGGACACAAAATGGAGTGACGGAGTGTCAACTGGTGAGTTCCCTGATGCAGGCCGCAGACAGTTGGCTTAGCCTGCTCCAGGTCAATCACCCCGATTTCCAGTTCTTTGCTTCGCACGGCATGCACTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

396

Amino Acids

44.28

Weight (kDa)

6.02

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1173
AasI GACNNNNNNGTC 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 1173
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 498
AciI CCGC 3 cut(s) 178, 274, 1107
AclWI GGATC 2 cut(s) 1041, 1054
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 3 cut(s) 151, 542, 691
AfaI GTAC 3 cut(s) 366, 785, 943
AfiI CCNNNNNNNGG 4 cut(s) 938, 1019, 1102, 1132
AgsI TTSAA 3 cut(s) 401, 886, 927
AhdI GACNNNNNGTC 1 cut(s) 1077
AjnI CCWGG 3 cut(s) 787, 823, 1131
AluBI AGCT 3 cut(s) 101, 686, 810
AluI AGCT 3 cut(s) 101, 686, 810
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 2 cut(s) 1041, 1054
AlwNI CAGNNNCTG 1 cut(s) 944
Ama87I CYCGRG 1 cut(s) 696
AoxI GGCC 2 cut(s) 742, 1104
ApoI RAATTY 3 cut(s) 151, 542, 691
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspS9I GGNCC 2 cut(s) 373, 875
AsuC2I CCSGG 1 cut(s) 956
AsuHPI GGTGA 5 cut(s) 214, 578, 650, 1099, 1133
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 2 cut(s) 373, 875
BaeI ACNNNNGTAYC 2 cut(s) 767, 800
BamHI GGATCC 1 cut(s) 1046
BanII GRGCYC 1 cut(s) 137
BccI CCATC 4 cut(s) 597, 671, 979, 983
BceAI ACGGC 2 cut(s) 729, 1186
BciT130I CCWGG 3 cut(s) 789, 825, 1133
BciVI GTATCC 2 cut(s) 437, 861
BcnI CCSGG 1 cut(s) 956
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 4 cut(s) 195, 612, 669, 768
BfmI CTRYAG 1 cut(s) 1180
BfuAI ACCTGC 1 cut(s) 1173
BfuI GTATCC 2 cut(s) 437, 861
BisI GCNGC 1 cut(s) 1107
BlpI GCTNAGC 1 cut(s) 1121
BlsI GCNGC 1 cut(s) 1108
Bme1390I CCNGG 4 cut(s) 789, 825, 956, 1133
Bme18I GGWCC 2 cut(s) 373, 875
BmeRI GACNNNNNGTC 1 cut(s) 1077
BmeT110I CYCGRG 1 cut(s) 696
BmgT120I GGNCC 2 cut(s) 373, 875
BmiI GGNNCC 3 cut(s) 876, 960, 1048
BmrFI CCNGG 4 cut(s) 789, 825, 956, 1133
BmrI ACTGGG 1 cut(s) 972
BmsI GCATC 8 cut(s) 68, 112, 154, 514, 721, 886, 1037, 1089
BmuI ACTGGG 1 cut(s) 972
BpmI CTGGAG 2 cut(s) 945, 1115
Bpu1102I GCTNAGC 1 cut(s) 1121
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 1 cut(s) 956
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 787, 788, 998
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 268, 298
Bsc4I CCNNNNNNNGG 4 cut(s) 938, 1019, 1102, 1132
Bse1I ACTGG 7 cut(s) 781, 949, 962, 978, 1029, 1089, 1153
BseBI CCWGG 3 cut(s) 789, 825, 1133
BseDI CCNNGG 3 cut(s) 787, 788, 998
BseGI GGATG 4 cut(s) 736, 840, 994, 1028
BseLI CCNNNNNNNGG 4 cut(s) 938, 1019, 1102, 1132
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 7 cut(s) 781, 949, 962, 978, 1029, 1089, 1153
BseYI CCCAGC 1 cut(s) 686
BshFI GGCC 2 cut(s) 744, 1106
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 1 cut(s) 956
BslFI GGGAC 2 cut(s) 614, 980
BslI CCNNNNNNNGG 4 cut(s) 938, 1019, 1102, 1132
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 2 cut(s) 614, 980
BsnI GGCC 2 cut(s) 744, 1106
Bso31I GGTCTC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 3 cut(s) 319, 969, 1046
Bsp1720I GCTNAGC 1 cut(s) 1121
BspACI CCGC 3 cut(s) 178, 274, 1107
BspANI GGCC 2 cut(s) 744, 1106
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 876, 960, 1048
BspMAI CTGCAG 1 cut(s) 1184
BspMI ACCTGC 1 cut(s) 1173
BspPI GGATC 2 cut(s) 1041, 1054
BspTNI GGTCTC 1 cut(s) 186
BsrBI CCGCTC 1 cut(s) 178
BsrI ACTGG 7 cut(s) 781, 949, 962, 978, 1029, 1089, 1153
BssECI CCNNGG 3 cut(s) 787, 788, 998
BssMI GATC 3 cut(s) 319, 969, 1046
BssT1I CCWWGG 1 cut(s) 998
Bst2UI CCWGG 3 cut(s) 789, 825, 1133
Bst4CI ACNGT 1 cut(s) 1115
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 2 cut(s) 1174, 1179
BstC8I GCNNGC 7 cut(s) 99, 112, 529, 901, 1104, 1127, 1175
BstDEI CTNAG 3 cut(s) 243, 593, 1121
BstENI CCTNNNNNAGG 2 cut(s) 1100, 1130
BstF5I GGATG 4 cut(s) 736, 840, 994, 1028
BstKTI GATC 3 cut(s) 322, 972, 1049
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 3 cut(s) 319, 969, 1046
BstMWI GCNNNNNNNGC 7 cut(s) 107, 356, 764, 773, 1126, 1174, 1179
BstNI CCWGG 3 cut(s) 789, 825, 1133
BstNSI RCATGY 1 cut(s) 1177
BstSCI CCNGG 4 cut(s) 787, 823, 954, 1131
BstSFI CTRYAG 1 cut(s) 1180
BstX2I RGATCY 1 cut(s) 1046
BstXI CCANNNNNNTGG 4 cut(s) 437, 788, 831, 985
BstYI RGATCY 1 cut(s) 1046
BsuI GTATCC 2 cut(s) 437, 861
BsuRI GGCC 2 cut(s) 744, 1106
BtsCI GGATG 4 cut(s) 736, 840, 994, 1028
BtsI GCAGTG 2 cut(s) 538, 1177
BtsIMutI CAGTG 5 cut(s) 311, 538, 969, 985, 1177
BveI ACCTGC 1 cut(s) 1173
Cac8I GCNNGC 7 cut(s) 99, 112, 529, 901, 1104, 1127, 1175
CaiI CAGNNNCTG 1 cut(s) 944
Cfr13I GGNCC 2 cut(s) 373, 875
Csp6I GTAC 3 cut(s) 365, 784, 942
CviAII CATG 3 cut(s) 635, 934, 1174
CviQI GTAC 3 cut(s) 365, 784, 942
DdeI CTNAG 3 cut(s) 243, 593, 1121
DpnI GATC 3 cut(s) 321, 971, 1048
DpnII GATC 3 cut(s) 319, 969, 1046
DrdI GACNNNNNNGTC 1 cut(s) 494
DriI GACNNNNNGTC 1 cut(s) 1077
DseDI GACNNNNNNGTC 1 cut(s) 494
EaeI YGGCCR 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 1077
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 998
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 373, 875
Eco88I CYCGRG 1 cut(s) 696
EcoNI CCTNNNNNAGG 2 cut(s) 1100, 1130
EcoRI GAATTC 2 cut(s) 151, 691
EcoRII CCWGG 3 cut(s) 787, 823, 1131
EcoT14I CCWWGG 1 cut(s) 998
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 998
FaeI CATG 3 cut(s) 638, 937, 1177
FaqI GGGAC 2 cut(s) 614, 980
FatI CATG 3 cut(s) 634, 933, 1173
FauNDI CATATG 2 cut(s) 352, 739
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 1107
FokI GGATG 4 cut(s) 743, 847, 1001, 1015
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 1107
FspBI CTAG 4 cut(s) 195, 612, 669, 768
GluI GCNGC 1 cut(s) 1107
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 2 cut(s) 945, 1115
HaeIII GGCC 2 cut(s) 744, 1106
HapII CCGG 1 cut(s) 956
Hin1II CATG 3 cut(s) 638, 937, 1177
HincII GTYRAC 2 cut(s) 499, 1082
HindII GTYRAC 2 cut(s) 499, 1082
HinfI GANTC 5 cut(s) 329, 389, 443, 512, 580
HpaII CCGG 1 cut(s) 956
HphI GGTGA 5 cut(s) 214, 578, 650, 1099, 1133
Hpy166II GTNNAC 6 cut(s) 222, 499, 641, 749, 1056, 1082
Hpy188I TCNGA 3 cut(s) 105, 150, 186
Hpy188III TCNNGA 4 cut(s) 25, 203, 696, 722
Hpy8I GTNNAC 6 cut(s) 222, 499, 641, 749, 1056, 1082
HpyAV CCTTC 1 cut(s) 653
HpyCH4III ACNGT 1 cut(s) 1115
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 356, 764, 773, 1126, 1174, 1179
HpyF3I CTNAG 3 cut(s) 243, 593, 1121
Hsp92II CATG 3 cut(s) 638, 937, 1177
Kzo9I GATC 3 cut(s) 319, 969, 1046
LmnI GCTCC 4 cut(s) 571, 739, 964, 1134
LweI GCATC 8 cut(s) 68, 112, 154, 514, 721, 886, 1037, 1089
MaeI CTAG 4 cut(s) 195, 612, 669, 768
MaeIII GTNAC 2 cut(s) 812, 1069
MalI GATC 3 cut(s) 321, 971, 1048
MbiI CCGCTC 1 cut(s) 178
MboI GATC 3 cut(s) 319, 969, 1046
MboII GAAGA 3 cut(s) 85, 438, 575
MfeI CAATTG 1 cut(s) 382
MflI RGATCY 1 cut(s) 1046
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 5 cut(s) 151, 382, 431, 542, 691
MmeI TCCRAC 2 cut(s) 812, 902
MnlI CCTC 7 cut(s) 34, 178, 241, 261, 270, 478, 692
MseI TTAA 4 cut(s) 378, 794, 803, 1040
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 956
MspR9I CCNGG 4 cut(s) 789, 825, 956, 1133
MunI CAATTG 1 cut(s) 382
MvaI CCWGG 3 cut(s) 789, 825, 1133
MwoI GCNNNNNNNGC 7 cut(s) 107, 356, 764, 773, 1126, 1174, 1179
NciI CCSGG 1 cut(s) 956
NdeI CATATG 2 cut(s) 352, 739
NdeII GATC 3 cut(s) 319, 969, 1046
NlaIII CATG 3 cut(s) 638, 937, 1177
NlaIV GGNNCC 3 cut(s) 876, 960, 1048
NmuCI GTSAC 2 cut(s) 812, 1069
NspI RCATGY 1 cut(s) 1177
PaeI GCATGC 1 cut(s) 1177
PaeR7I CTCGAG 1 cut(s) 696
PaqCI CACCTGC 1 cut(s) 1173
PasI CCCWGGG 1 cut(s) 788
PfeI GAWTC 5 cut(s) 329, 389, 443, 512, 580
PkrI GCNGC 1 cut(s) 1108
Psp6I CCWGG 3 cut(s) 787, 823, 1131
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 3 cut(s) 787, 823, 1131
PspN4I GGNNCC 3 cut(s) 876, 960, 1048
PspPI GGNCC 2 cut(s) 373, 875
PstI CTGCAG 1 cut(s) 1184
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 1 cut(s) 1046
RsaI GTAC 3 cut(s) 366, 785, 943
RsaNI GTAC 3 cut(s) 365, 784, 942
RseI CAYNNNNRTG 1 cut(s) 59
SalI GTCGAC 1 cut(s) 497
SaqAI TTAA 4 cut(s) 378, 794, 803, 1040
SatI GCNGC 1 cut(s) 1107
Sau3AI GATC 3 cut(s) 319, 969, 1046
Sau96I GGNCC 2 cut(s) 373, 875
ScrFI CCNGG 4 cut(s) 789, 825, 956, 1133
SduI GDGCHC 1 cut(s) 137
SfaNI GCATC 8 cut(s) 68, 112, 154, 514, 721, 886, 1037, 1089
SfcI CTRYAG 1 cut(s) 1180
Sfr274I CTCGAG 1 cut(s) 696
SinI GGWCC 2 cut(s) 373, 875
SlaI CTCGAG 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 696, 722
SmoI CTYRAG 2 cut(s) 696, 722
SphI GCATGC 1 cut(s) 1177
Sse9I AATT 5 cut(s) 151, 382, 431, 542, 691
SsiI CCGC 3 cut(s) 178, 274, 1107
SspMI CTAG 4 cut(s) 195, 612, 669, 768
StyD4I CCNGG 4 cut(s) 787, 823, 954, 1131
StyI CCWWGG 1 cut(s) 998
TaaI ACNGT 1 cut(s) 1115
TaqI TCGA 5 cut(s) 174, 498, 515, 697, 862
TasI AATT 5 cut(s) 151, 382, 431, 542, 691
TauI GCSGC 1 cut(s) 1109
TfiI GAWTC 5 cut(s) 329, 389, 443, 512, 580
Tru1I TTAA 4 cut(s) 378, 794, 803, 1040
Tru9I TTAA 4 cut(s) 378, 794, 803, 1040
TscAI CASTG 5 cut(s) 318, 538, 969, 985, 1184
TseFI GTSAC 2 cut(s) 812, 1069
Tsp45I GTSAC 2 cut(s) 812, 1069
TspDTI ATGAA 2 cut(s) 144, 555
TspGWI ACGGA 2 cut(s) 402, 1088
TspRI CASTG 5 cut(s) 318, 538, 969, 985, 1184
VpaK11BI GGWCC 2 cut(s) 373, 875
XagI CCTNNNNNAGG 2 cut(s) 1100, 1130
XapI RAATTY 3 cut(s) 151, 542, 691
XceI RCATGY 1 cut(s) 1177
XhoI CTCGAG 1 cut(s) 696
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 4 cut(s) 195, 612, 669, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.