Rw7G006500

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016846
Physical Location & Seq
Forward (+)
5559121 .. 5563041
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006500.1

Sequence Viewer

Length: 882 bp
ATGTTGAGTACAAGATTACAGTCTGGAAATGTTAGTGGAGAGGGCAGGTTTCACATTGCTGGGAAAGCAAGGAAGAGATGCAATCAGCAGCAAAAGCAGGCCAGGAAAGCAAAGAATGATGCAAACCAGAGCCCCAAAGAGAGCAAAGTTGTGGTTTCTGAGATCAAAGAGACTCAAAATTCATTGGCAAAGCCTTGTTCTGATCCCACTTTAACGCCAAGGAGTAATCTTGACAGGTTTTTGGAGTCTACTACGCCTTCAGTTCCGGCCCAGTATTTCTCTAAGACGACAATGAGGGGGTCAAGAACTTGTGATGTGGAGTTTCAGTCTTACTTCGCTTTAAATGATCTTTGGGAATCGTTTAGGGAATGGAGTGCTTATGGAGCAGGAGTACCATTAGTCCTTAACAAAAGTGATTCTGTTATTCAATATTATGTTCCTTATTTATCCGGTATCCAATTATATGGCGAATCTGCTGTGAAGTCAAGTGCAAAGCAAAGGCAAGTTGGTGAGGACAATGATGATGACTACTATTTGGATTCAAGTAGTGATGCAAGCAGTGACTATGAAATTGAAAAACTCATGAAGACTACTAGGGAGCAGCAGCATATTCTTCACCAATTAAACAATGAAGTTTCTAGTAGAATGGACGGGTTGTCCATACGTGATGAACACCCCATATTGCAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGACTTCTCAAGGCTTGCTTTTTGAGTATCTTGAGCGGGATGCTCCATATGGCCGTGAACCATTGGCTGACAAGATATCAGACCTTGCACGCAAGTACCCTAGGTTGAAAACATTGAGAAGTTGCGACTTACTGCGAGGCAGTTGGATGTCAGTAGCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

293

Amino Acids

33.08

Weight (kDa)

5.92

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 75 - 293 1.5e-62 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 754
AccI GTMKAC 1 cut(s) 248
AciI CCGC 1 cut(s) 754
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 10, 393, 815
AgsI TTSAA 4 cut(s) 428, 543, 575, 826
AhdI GACNNNNNGTC 1 cut(s) 655
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 2 cut(s) 716, 875
AluI AGCT 2 cut(s) 716, 875
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 197
AoxI GGCC 3 cut(s) 99, 267, 769
ApeKI GCWGC 3 cut(s) 88, 601, 604
ApoI RAATTY 1 cut(s) 178
AspA2I CCTAGG 1 cut(s) 818
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 2 cut(s) 521, 608
AvrII CCTAGG 1 cut(s) 818
BaeI ACNNNNGTAYC 2 cut(s) 797, 830
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 593
BbvI GCAGC 3 cut(s) 100, 613, 616
BccI CCATC 1 cut(s) 701
BceAI ACGGC 1 cut(s) 756
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 4 cut(s) 594, 639, 699, 819
BfuAI ACCTGC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 3 cut(s) 89, 602, 605
BlnI CCTAGG 1 cut(s) 818
BlsI GCNGC 3 cut(s) 90, 603, 606
Bme1390I CCNGG 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 655
BmgT120I GGNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 4 cut(s) 68, 109, 541, 748
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 711, 770
BsaAI YACGTR 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 218, 818
BsaWI WCCGGW 1 cut(s) 449
BsaXI ACNNNNNCTCC 4 cut(s) 311, 341, 375, 405
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 218, 818
BseGI GGATG 2 cut(s) 763, 870
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 271
BseXI GCAGC 3 cut(s) 100, 613, 616
BseYI CCCAGC 2 cut(s) 59, 716
BshFI GGCC 3 cut(s) 101, 269, 771
BsiSI CCGG 2 cut(s) 266, 450
BslFI GGGAC 1 cut(s) 733
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 733
BsnI GGCC 3 cut(s) 101, 269, 771
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 162, 202, 346
BspACI CCGC 1 cut(s) 754
BspANI GGCC 3 cut(s) 101, 269, 771
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 582
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 218, 818
BssMI GATC 3 cut(s) 162, 202, 346
BssT1I CCWWGG 2 cut(s) 218, 818
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 665
BstC8I GCNNGC 4 cut(s) 99, 556, 734, 808
BstDEI CTNAG 2 cut(s) 159, 282
BstF5I GGATG 2 cut(s) 763, 870
BstKTI GATC 3 cut(s) 165, 205, 349
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 162, 202, 346
BstMWI GCNNNNNNNGC 4 cut(s) 65, 94, 107, 383
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 100, 613, 616
BstV2I GAAGAC 1 cut(s) 593
BstXI CCANNNNNNTGG 1 cut(s) 464
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 3 cut(s) 101, 269, 771
BtsCI GGATG 2 cut(s) 763, 870
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 565
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 4 cut(s) 99, 556, 734, 808
CciI TCATGA 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 3 cut(s) 9, 392, 814
CviAII CATG 1 cut(s) 583
CviQI GTAC 3 cut(s) 9, 392, 814
DdeI CTNAG 2 cut(s) 159, 282
DpnI GATC 3 cut(s) 164, 204, 348
DpnII GATC 3 cut(s) 162, 202, 346
DraI TTTAAA 1 cut(s) 342
DriI GACNNNNNGTC 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 218, 818
Eco24I GRGCYC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 795
Eco57I CTGAAG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 795
EcoT14I CCWWGG 2 cut(s) 218, 818
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 2 cut(s) 218, 818
FaeI CATG 1 cut(s) 586
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FaqI GGGAC 1 cut(s) 733
FatI CATG 1 cut(s) 582
FauI CCCGC 1 cut(s) 747
FauNDI CATATG 1 cut(s) 766
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 89, 602, 605
FokI GGATG 2 cut(s) 770, 877
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 89, 602, 605
FspBI CTAG 4 cut(s) 594, 639, 699, 819
GluI GCNGC 3 cut(s) 89, 602, 605
GsaI CCCAGC 2 cut(s) 63, 720
HaeIII GGCC 3 cut(s) 101, 269, 771
HapII CCGG 2 cut(s) 266, 450
Hin1II CATG 1 cut(s) 586
HinfI GANTC 6 cut(s) 172, 245, 356, 416, 470, 539
HpaII CCGG 2 cut(s) 266, 450
HphI GGTGA 2 cut(s) 521, 608
Hpy166II GTNNAC 2 cut(s) 249, 776
Hpy188I TCNGA 3 cut(s) 160, 202, 799
Hpy188III TCNNGA 5 cut(s) 24, 230, 303, 583, 749
Hpy8I GTNNAC 2 cut(s) 249, 776
HpyAV CCTTC 2 cut(s) 267, 683
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 6 cut(s) 81, 122, 491, 554, 685, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 94, 107, 383
HpyF3I CTNAG 2 cut(s) 159, 282
HpySE526I ACGT 1 cut(s) 664
Hsp92II CATG 1 cut(s) 586
Kzo9I GATC 3 cut(s) 162, 202, 346
LmnI GCTCC 3 cut(s) 383, 598, 766
Lsp1109I GCAGC 3 cut(s) 100, 613, 616
LweI GCATC 4 cut(s) 68, 109, 541, 748
MaeI CTAG 4 cut(s) 594, 639, 699, 819
MaeII ACGT 1 cut(s) 664
MaeIII GTNAC 1 cut(s) 560
MalI GATC 3 cut(s) 164, 204, 348
MbiI CCGCTC 1 cut(s) 754
MboI GATC 3 cut(s) 162, 202, 346
MboII GAAGA 3 cut(s) 85, 598, 605
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 4 cut(s) 178, 458, 570, 620
MlyI GAGTC 2 cut(s) 166, 254
MmeI TCCRAC 1 cut(s) 842
MnlI CCTC 4 cut(s) 34, 288, 505, 848
MseI TTAA 4 cut(s) 212, 341, 405, 623
MspI CCGG 2 cut(s) 266, 450
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 4 cut(s) 65, 94, 107, 383
NdeI CATATG 1 cut(s) 766
NdeII GATC 3 cut(s) 162, 202, 346
NlaIII CATG 1 cut(s) 586
NmuCI GTSAC 1 cut(s) 560
PagI TCATGA 1 cut(s) 582
PfeI GAWTC 4 cut(s) 356, 416, 470, 539
PkrI GCNGC 3 cut(s) 90, 603, 606
PleI GAGTC 2 cut(s) 166, 253
PpsI GAGTC 2 cut(s) 166, 253
Ppu21I YACGTR 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 2 cut(s) 59, 716
PspGI CCWGG 1 cut(s) 101
PspPI GGNCC 1 cut(s) 268
RsaI GTAC 3 cut(s) 10, 393, 815
RsaNI GTAC 3 cut(s) 9, 392, 814
SaqAI TTAA 4 cut(s) 212, 341, 405, 623
SatI GCNGC 3 cut(s) 89, 602, 605
Sau3AI GATC 3 cut(s) 162, 202, 346
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 2 cut(s) 166, 254
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 134
SetI ASST 7 cut(s) 50, 239, 667, 718, 804, 824, 877
SfaNI GCATC 4 cut(s) 68, 109, 541, 748
SmlI CTYRAG 2 cut(s) 726, 749
SmoI CTYRAG 2 cut(s) 726, 749
Sse9I AATT 4 cut(s) 178, 458, 570, 620
SsiI CCGC 1 cut(s) 754
SspI AATATT 1 cut(s) 431
SspMI CTAG 4 cut(s) 594, 639, 699, 819
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 2 cut(s) 218, 818
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 667
TasI AATT 4 cut(s) 178, 458, 570, 620
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 4 cut(s) 356, 416, 470, 539
Tru1I TTAA 4 cut(s) 212, 341, 405, 623
Tru9I TTAA 4 cut(s) 212, 341, 405, 623
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 3 cut(s) 88, 601, 604
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 5 cut(s) 171, 582, 599, 645, 684
TspRI CASTG 1 cut(s) 565
XapI RAATTY 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 4 cut(s) 594, 639, 699, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.