Prupe.5G224100_v2.0.a1

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016846
Physical Location & Seq
Forward (+)
17372521 .. 17377299
4779 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G224100.1

Sequence Viewer

Length: 1236 bp
ATGTTGGGAAGTGGGTTACAGTTTGGAAATGTACGTGGGGAGGACAGGTTTTACATTCCTGTGAAAGCAAGAAAGAGATACAATAATCAGCAAAAGCAAGCTAGGAAAGCCAAGAATGATGCAAACGAGAACCCCAAAGAGCTTCCAAAGAGCAAAGTAGTGGTTTCTGAGAAGAGAAGCCCCAAAGAGCCTCCAAATACATTGGCAAAGCCTTCTTCTGAGTCATCTGTAAAGCCTAGTAGTAATCTTGACAGGCTCTTGGAGTCCACCACTCCTTCAGTTCCTGCGCAGTATTTCTCTAAGACGACGATGAGGGGGTGGAGGACTTGCGATGTTGAGTTTCAGCCTTACTTCACATTGAATGATCTTTGGGAATCGTTTAGGGAGTGGAGTGCATATGGGGCAGGAGTGCCATTGGTACTTAACAAAAGTGATTCTGTTATTCAATATTATGTTCCCTATTTATCTGGTATCCAATTATATGGGGAATCTTCTGTGAAGTCAAATGCAAAGTCAAGGCAAGTTGGTGAGGACAGTCATGTTGACTACGATTTGGATTCAAGTAGTGATGCAAGCAGTGATTATGAAGTTGAGAAACACAAAAAGACTGCTAAGGAGCAGCAAGCTCTTCACCGTTTAAACATGGATGTTCCTATTAGAATGGGCGGGTTGTCCATACATGATGAACACCCTTTGTTACAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGAATTCTTGTGGTGTCCTGCTTTTTGAGTTTCTTGAGCAGGATGCTCCATATGGCCGAGAACCATTGGCTGACAAGATATCAGATCTAGCATGCCAGTACCCTGGGTTGAAGACATTAAGAAGTTGTGACTTACTGCCAGGAAGTTGGATGTCAGTGGCTTGGTATCCCATATATCGAATACCTATGGGTCCAACACTGAAAGATTTGGAAGCTTGCTTTCTGACGTATCATTCACTTTCAACACCCACGGCAGTTAGTGGAAGCATGCAGGCTCCAGTGATGGTCTATCCCACCGAGATGGACGGTGTACCAAAGATTTCCTTACCTGTTTTTGGAATGGCTGCTTATAAGTTAAAAAGAACAACGTGGACACAAAATGGAGTAATGGAGTGTCAACTGGCAAATTCCCTGATGCAGGCTGCAGGCAATTGGCTAACCCTGCTTCGGGTCAATCATCCGGATTTCCAGTTCTTTGCTTCACACGGCATGTACTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

412

Amino Acids

46.05

Weight (kDa)

6.47

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1083
AarI CACCTGC 1 cut(s) 1221
Acc16I TGCGCA 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 1221
AccIII TCCGGA 1 cut(s) 1192
AciI CCGC 1 cut(s) 666
AcoI YGGCCR 1 cut(s) 787
AcsI RAATTY 2 cut(s) 736, 1138
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 5 cut(s) 33, 420, 833, 1044, 1226
AfiI CCNNNNNNNGG 4 cut(s) 1067, 1150, 1179, 1180
AgsI TTSAA 5 cut(s) 361, 446, 561, 844, 975
AjnI CCWGG 2 cut(s) 835, 871
AloI GAACNNNNNNTCC 2 cut(s) 1187, 1219
AluBI AGCT 5 cut(s) 101, 142, 626, 731, 947
AluI AGCT 5 cut(s) 101, 142, 626, 731, 947
AlwNI CAGNNNCTG 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 1192
AoxI GGCC 1 cut(s) 787
ApeKI GCWGC 3 cut(s) 619, 1076, 1154
ApoI RAATTY 2 cut(s) 736, 1138
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 923
AsuHPI GGTGA 2 cut(s) 539, 623
AvaII GGWCC 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 851
BbvI GCAGC 3 cut(s) 631, 1063, 1141
BccI CCATC 3 cut(s) 716, 1009, 1027
BceAI ACGGC 2 cut(s) 999, 1234
BciT130I CCWGG 2 cut(s) 837, 873
BciVI GTATCC 2 cut(s) 482, 909
BfaI CTAG 4 cut(s) 102, 237, 714, 821
BfmI CTRYAG 2 cut(s) 1155, 1228
BfuAI ACCTGC 1 cut(s) 1221
BfuI GTATCC 2 cut(s) 482, 909
BglII AGATCT 1 cut(s) 817
BisI GCNGC 3 cut(s) 620, 1077, 1155
BlsI GCNGC 3 cut(s) 621, 1078, 1156
Bme1390I CCNGG 2 cut(s) 837, 873
Bme18I GGWCC 1 cut(s) 923
BmgT120I GGNCC 1 cut(s) 923
BmiI GGNNCC 2 cut(s) 924, 1008
BmrFI CCNGG 2 cut(s) 837, 873
BmsI GCATC 4 cut(s) 109, 559, 766, 1137
BpiI GAAGAC 1 cut(s) 851
BpmI CTGGAG 1 cut(s) 993
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 835, 836, 981
BsaWI WCCGGW 1 cut(s) 1192
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 4 cut(s) 1067, 1150, 1179, 1180
Bse1I ACTGG 4 cut(s) 829, 1010, 1137, 1201
BseAI TCCGGA 1 cut(s) 1192
BseBI CCWGG 2 cut(s) 837, 873
BseDI CCNNGG 3 cut(s) 835, 836, 981
BseGI GGATG 4 cut(s) 652, 781, 888, 1189
BseLI CCNNNNNNNGG 4 cut(s) 1067, 1150, 1179, 1180
BseMII CTCAG 2 cut(s) 159, 210
BseNI ACTGG 4 cut(s) 829, 1010, 1137, 1201
BseXI GCAGC 3 cut(s) 631, 1063, 1141
BseYI CCCAGC 1 cut(s) 731
BshFI GGCC 1 cut(s) 789
BsiSI CCGG 1 cut(s) 1193
BslI CCNNNNNNNGG 4 cut(s) 1067, 1150, 1179, 1180
BsnI GGCC 1 cut(s) 789
Bsp13I TCCGGA 1 cut(s) 1192
Bsp143I GATC 2 cut(s) 364, 817
BspACI CCGC 1 cut(s) 666
BspANI GGCC 1 cut(s) 789
BspCNI CTCAG 2 cut(s) 160, 211
BspEI TCCGGA 1 cut(s) 1192
BspLI GGNNCC 2 cut(s) 924, 1008
BspMAI CTGCAG 2 cut(s) 1159, 1232
BspMI ACCTGC 1 cut(s) 1221
BspQI GCTCTTC 1 cut(s) 633
BsrI ACTGG 4 cut(s) 829, 1010, 1137, 1201
BssECI CCNNGG 3 cut(s) 835, 836, 981
BssMI GATC 2 cut(s) 364, 817
Bst2UI CCWGG 2 cut(s) 837, 873
Bst4CI ACNGT 4 cut(s) 21, 536, 635, 1040
Bst6I CTCTTC 2 cut(s) 167, 633
BstAPI GCANNNNNTGC 1 cut(s) 1227
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 9 cut(s) 99, 574, 624, 826, 949, 1001, 1005, 1152, 1159
BstDEI CTNAG 4 cut(s) 168, 219, 300, 612
BstDSI CCRYGG 1 cut(s) 981
BstENI CCTNNNNNAGG 1 cut(s) 1148
BstF5I GGATG 4 cut(s) 652, 781, 888, 1189
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 2 cut(s) 367, 820
BstMBI GATC 2 cut(s) 364, 817
BstMWI GCNNNNNNNGC 4 cut(s) 107, 401, 1174, 1227
BstNI CCWGG 2 cut(s) 837, 873
BstNSI RCATGY 3 cut(s) 828, 1003, 1225
BstSCI CCNGG 2 cut(s) 835, 871
BstSFI CTRYAG 2 cut(s) 1155, 1228
BstV1I GCAGC 3 cut(s) 631, 1063, 1141
BstV2I GAAGAC 1 cut(s) 851
BstX2I RGATCY 1 cut(s) 817
BstXI CCANNNNNNTGG 4 cut(s) 482, 836, 879, 1033
BstYI RGATCY 1 cut(s) 817
BsuI GTATCC 2 cut(s) 482, 909
BsuRI GGCC 1 cut(s) 789
BtgI CCRYGG 1 cut(s) 981
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 4 cut(s) 652, 781, 888, 1189
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 4 cut(s) 583, 894, 929, 1017
BveI ACCTGC 1 cut(s) 1221
Cac8I GCNNGC 9 cut(s) 99, 574, 624, 826, 949, 1001, 1005, 1152, 1159
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 923
Csp6I GTAC 5 cut(s) 32, 419, 832, 1043, 1225
CviAII CATG 6 cut(s) 539, 643, 680, 825, 1000, 1222
CviQI GTAC 5 cut(s) 32, 419, 832, 1043, 1225
DdeI CTNAG 4 cut(s) 168, 219, 300, 612
DpnI GATC 2 cut(s) 366, 819
DpnII GATC 2 cut(s) 364, 817
DraI TTTAAA 1 cut(s) 639
EaeI YGGCCR 1 cut(s) 787
Eam1104I CTCTTC 2 cut(s) 167, 633
EarI CTCTTC 2 cut(s) 167, 633
Eco32I GATATC 1 cut(s) 813
Eco47I GGWCC 1 cut(s) 923
Eco57I CTGAAG 1 cut(s) 261
EcoNI CCTNNNNNAGG 1 cut(s) 1148
EcoRI GAATTC 1 cut(s) 736
EcoRII CCWGG 2 cut(s) 835, 871
EcoRV GATATC 1 cut(s) 813
FaeI CATG 6 cut(s) 542, 646, 683, 828, 1003, 1225
FalI AAGNNNNNCTT 2 cut(s) 1040, 1072
FatI CATG 6 cut(s) 538, 642, 679, 824, 999, 1221
FauI CCCGC 1 cut(s) 659
FauNDI CATATG 2 cut(s) 397, 784
Fnu4HI GCNGC 3 cut(s) 620, 1077, 1155
FokI GGATG 4 cut(s) 659, 788, 895, 1176
Fsp4HI GCNGC 3 cut(s) 620, 1077, 1155
FspBI CTAG 4 cut(s) 102, 237, 714, 821
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 1 cut(s) 288
GluI GCNGC 3 cut(s) 620, 1077, 1155
GsaI CCCAGC 1 cut(s) 735
GsuI CTGGAG 1 cut(s) 993
HaeIII GGCC 1 cut(s) 789
HapII CCGG 1 cut(s) 1193
HhaI GCGC 1 cut(s) 289
Hin1II CATG 6 cut(s) 542, 646, 683, 828, 1003, 1225
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 2 cut(s) 544, 1130
HindII GTYRAC 2 cut(s) 544, 1130
HindIII AAGCTT 1 cut(s) 945
HinfI GANTC 6 cut(s) 221, 263, 374, 434, 488, 557
HpaII CCGG 1 cut(s) 1193
HphI GGTGA 2 cut(s) 539, 623
Hpy166II GTNNAC 5 cut(s) 267, 544, 1043, 1104, 1130
Hpy188I TCNGA 4 cut(s) 169, 220, 817, 957
Hpy188III TCNNGA 3 cut(s) 248, 767, 1193
Hpy8I GTNNAC 5 cut(s) 267, 544, 1043, 1104, 1130
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 3 cut(s) 222, 285, 698
HpyCH4III ACNGT 4 cut(s) 21, 536, 635, 1040
HpyCH4IV ACGT 3 cut(s) 34, 959, 1100
HpyCH4V TGCA 8 cut(s) 122, 395, 509, 572, 1003, 1150, 1157, 1230
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 401, 1174, 1227
HpyF3I CTNAG 4 cut(s) 168, 219, 300, 612
HpySE526I ACGT 3 cut(s) 34, 959, 1100
Hsp92II CATG 6 cut(s) 542, 646, 683, 828, 1003, 1225
HspAI GCGC 1 cut(s) 287
Kpn2I TCCGGA 1 cut(s) 1192
Kzo9I GATC 2 cut(s) 364, 817
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 3 cut(s) 616, 784, 1012
Lsp1109I GCAGC 3 cut(s) 631, 1063, 1141
LweI GCATC 4 cut(s) 109, 559, 766, 1137
MaeI CTAG 4 cut(s) 102, 237, 714, 821
MaeII ACGT 3 cut(s) 34, 959, 1100
MaeIII GTNAC 3 cut(s) 15, 696, 860
MalI GATC 2 cut(s) 366, 819
MboI GATC 2 cut(s) 364, 817
MboII GAAGA 5 cut(s) 184, 207, 483, 620, 856
MfeI CAATTG 1 cut(s) 1162
MflI RGATCY 1 cut(s) 817
MluCI AATT 4 cut(s) 476, 736, 1138, 1162
MlyI GAGTC 2 cut(s) 230, 272
MmeI TCCRAC 2 cut(s) 860, 950
MnlI CCTC 5 cut(s) 34, 201, 306, 315, 523
MroI TCCGGA 1 cut(s) 1192
MseI TTAA 4 cut(s) 423, 638, 851, 1088
MslI CAYNNNNRTG 2 cut(s) 59, 1031
MspI CCGG 1 cut(s) 1193
MspR9I CCNGG 2 cut(s) 837, 873
MssI GTTTAAAC 1 cut(s) 639
MunI CAATTG 1 cut(s) 1162
MvaI CCWGG 2 cut(s) 837, 873
MwoI GCNNNNNNNGC 4 cut(s) 107, 401, 1174, 1227
NdeI CATATG 2 cut(s) 397, 784
NdeII GATC 2 cut(s) 364, 817
NlaIII CATG 6 cut(s) 542, 646, 683, 828, 1003, 1225
NlaIV GGNNCC 2 cut(s) 924, 1008
NmeAIII GCCGAG 1 cut(s) 815
NmuCI GTSAC 1 cut(s) 860
NsbI TGCGCA 1 cut(s) 288
NspI RCATGY 3 cut(s) 828, 1003, 1225
PaeI GCATGC 2 cut(s) 828, 1003
PaqCI CACCTGC 1 cut(s) 1221
PasI CCCWGGG 1 cut(s) 836
PciSI GCTCTTC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 374, 434, 488, 557
PkrI GCNGC 3 cut(s) 621, 1078, 1156
PleI GAGTC 2 cut(s) 229, 271
PmeI GTTTAAAC 1 cut(s) 639
PpsI GAGTC 2 cut(s) 229, 271
Ppu21I YACGTR 1 cut(s) 35
PsiI TTATAA 1 cut(s) 1083
Psp6I CCWGG 2 cut(s) 835, 871
PspFI CCCAGC 1 cut(s) 731
PspGI CCWGG 2 cut(s) 835, 871
PspN4I GGNNCC 2 cut(s) 924, 1008
PspPI GGNCC 1 cut(s) 923
PstI CTGCAG 2 cut(s) 1159, 1232
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 817
RsaI GTAC 5 cut(s) 33, 420, 833, 1044, 1226
RsaNI GTAC 5 cut(s) 32, 419, 832, 1043, 1225
RseI CAYNNNNRTG 2 cut(s) 59, 1031
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 4 cut(s) 423, 638, 851, 1088
SatI GCNGC 3 cut(s) 620, 1077, 1155
Sau3AI GATC 2 cut(s) 364, 817
Sau96I GGNCC 1 cut(s) 923
SchI GAGTC 2 cut(s) 230, 272
ScrFI CCNGG 2 cut(s) 837, 873
SfaNI GCATC 4 cut(s) 109, 559, 766, 1137
SfcI CTRYAG 2 cut(s) 1155, 1228
SinI GGWCC 1 cut(s) 923
SmiMI CAYNNNNRTG 2 cut(s) 59, 1031
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
SphI GCATGC 2 cut(s) 828, 1003
Sse9I AATT 4 cut(s) 476, 736, 1138, 1162
SsiI CCGC 1 cut(s) 666
SspI AATATT 1 cut(s) 449
SspMI CTAG 4 cut(s) 102, 237, 714, 821
StyD4I CCNGG 2 cut(s) 835, 871
TaaI ACNGT 4 cut(s) 21, 536, 635, 1040
TaiI ACGT 3 cut(s) 37, 962, 1103
TaqI TCGA 1 cut(s) 910
TasI AATT 4 cut(s) 476, 736, 1138, 1162
TatI WGTACW 1 cut(s) 1224
TfiI GAWTC 4 cut(s) 374, 434, 488, 557
Tru1I TTAA 4 cut(s) 423, 638, 851, 1088
Tru9I TTAA 4 cut(s) 423, 638, 851, 1088
TscAI CASTG 4 cut(s) 583, 894, 936, 1017
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 3 cut(s) 619, 1076, 1154
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 2 cut(s) 600, 699
TspRI CASTG 4 cut(s) 583, 894, 936, 1017
VpaK11BI GGWCC 1 cut(s) 923
XagI CCTNNNNNAGG 1 cut(s) 1148
XapI RAATTY 2 cut(s) 736, 1138
XceI RCATGY 3 cut(s) 828, 1003, 1225
XspI CTAG 4 cut(s) 102, 237, 714, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.