RLG00000004870

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016846
Physical Location & Seq
Reverse (-)
63237268 .. 63240252
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004870

Sequence Viewer

Length: 1212 bp
ATGTTGATTACAAGATTACAGTTTGGAAATGTTACTGGTGAGGATAGGTTTTACATTGCTGGGAAAGCAAGGAAGAGATACAATCAGCAGCAAAAGCAGGCCAGGAAAGCAAAGAATGATGCAAACCAGAGCCCCAAAGAGAGCAAAGTTCTGGTTTCTGAGATCAAAGAGACTCAAAATTCAATTGCAAAGCCTTGTTCTGATCCCACTTTAACGTCAAGGAGTAATCTTGACAGTTTTTTGGAGTCTACTACGCCTTCAGTTCCGGCCCAGTATTTCTCTAAGACGACAGTGAGGGGGTTGAGATGTGATGTGGAGTTTCAGCCTTACTTCGCTTTGAATGATCTGTGGGAATCGTTTAGGGAATGGAGTGCTTATGGAGCAGGAGTACCATTAGTCCTTAACAAAAGTGATTCTGTCATTCAATATTATGTTCCTTATTTATCCGGCATCCAATTATATGGCGAATCTGCTGTGAAGTCAAGTGCAAAGCAAAGGCAAGTTGGTGAGGACAATGATGATGACTACTATTTGGATTCAAGTAGTGATGCAAGCGGTGACTATGAAATTGAAAAACACATGAAGACTACTAGGGAGCAGCAGCATATTCTTCACCAATTAAACAATGAAGTTTCTAGTAGAATGGACGGGTTGTCCATACGTGATGAACACCCCATATTGCAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGACTTCTCAAGGCTTGCTTTTTGAGTATCTTGAGCGGGATGCTCCATATGGCCGTGAACCATTGGTTGACAAGATATCTGACCTTGCACGCAAGTACCCTAGGTTGAAAACATTGAGAAGTTGCGACTTACTGCGAGGCAGTTGGATGTCAGTAGCTTGGTATCCCATATATCGAATACCTATGGGTCCAACGTTGAAAGATTTGGATGCTTGCTTTCTGACATATCATTCTCTTTCAACGCCCATGAAAGGTAGTGGAAGTGACCAAGCTCCAGTGATGGTGTATCCCAGTGAGATGGATGGTGTCCCAAAGATTTCGTTACGTATTTTTGGATTGGCTTCGTATAAGCTCAAAGGATCCTTGTGGGCACATAATGGTATAGAGTGTCAACTGGCCGATTCCCTGATGCAAGCTGCAGACAACTGGCTTAGCCTCCTTCAGGTCAATCACCCTGACTTCCGGTTCTTTGCTTCACATGGCATGTACTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

404

Amino Acids

45.6

Weight (kDa)

5.96

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 75 - 395 6.1e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1197
Acc36I ACCTGC 1 cut(s) 1197
AccBSI CCGCTC 1 cut(s) 751
AccI GTMKAC 1 cut(s) 248
AciI CCGC 2 cut(s) 555, 751
AclI AACGTT 1 cut(s) 908
AclWI GGATC 3 cut(s) 197, 1068, 1081
AcoI YGGCCR 2 cut(s) 766, 1110
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 2 cut(s) 243, 1139
AfaI GTAC 3 cut(s) 390, 812, 1202
AfiI CCNNNNNNNGG 2 cut(s) 965, 1156
AgsI TTSAA 8 cut(s) 183, 340, 425, 540, 572, 823, 913, 954
AhdI GACNNNNNGTC 1 cut(s) 652
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 5 cut(s) 713, 872, 986, 1066, 1130
AluI AGCT 5 cut(s) 713, 872, 986, 1066, 1130
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 3 cut(s) 197, 1068, 1081
AoxI GGCC 4 cut(s) 99, 267, 766, 1110
ApeKI GCWGC 4 cut(s) 88, 598, 601, 1130
ApoI RAATTY 1 cut(s) 178
AspA2I CCTAGG 1 cut(s) 815
AspS9I GGNCC 2 cut(s) 268, 902
AsuHPI GGTGA 5 cut(s) 50, 518, 569, 605, 1157
AvaII GGWCC 1 cut(s) 902
AvrII CCTAGG 1 cut(s) 815
BaeGI GKGCMC 1 cut(s) 1087
BaeI ACNNNNGTAYC 2 cut(s) 794, 827
BamHI GGATCC 1 cut(s) 1073
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 590
BbvI GCAGC 4 cut(s) 100, 610, 613, 1117
BccI CCATC 4 cut(s) 698, 988, 1006, 1010
BceAI ACGGC 1 cut(s) 753
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 2 cut(s) 888, 1011
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 4 cut(s) 591, 636, 696, 816
BfmI CTRYAG 2 cut(s) 1131, 1204
BfuAI ACCTGC 1 cut(s) 1197
BfuI GTATCC 2 cut(s) 888, 1011
BisI GCNGC 4 cut(s) 89, 599, 602, 1131
BlnI CCTAGG 1 cut(s) 815
BlpI GCTNAGC 1 cut(s) 1145
BlsI GCNGC 4 cut(s) 90, 600, 603, 1132
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 902
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgT120I GGNCC 2 cut(s) 268, 902
BmiI GGNNCC 2 cut(s) 903, 1075
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 2 cut(s) 265, 999
BmsI GCATC 6 cut(s) 109, 459, 538, 745, 913, 1113
BmuI ACTGGG 2 cut(s) 265, 999
BpiI GAAGAC 1 cut(s) 590
BpmI CTGGAG 1 cut(s) 972
Bpu1102I GCTNAGC 1 cut(s) 1145
BpuEI CTTGAG 2 cut(s) 708, 767
BsaAI YACGTR 2 cut(s) 662, 1040
BsaJI CCNNGG 1 cut(s) 815
BsaWI WCCGGW 1 cut(s) 1176
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 965, 1156
Bse1I ACTGG 6 cut(s) 40, 271, 989, 1005, 1113, 1145
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 815
BseGI GGATG 5 cut(s) 450, 760, 867, 928, 1021
BseLI CCNNNNNNNGG 2 cut(s) 965, 1156
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 6 cut(s) 40, 271, 989, 1005, 1113, 1145
BseSI GKGCMC 1 cut(s) 1087
BseXI GCAGC 4 cut(s) 100, 610, 613, 1117
BseYI CCCAGC 2 cut(s) 59, 713
BshFI GGCC 4 cut(s) 101, 269, 768, 1112
BsiSI CCGG 3 cut(s) 266, 447, 1177
BslFI GGGAC 2 cut(s) 730, 1007
BslI CCNNNNNNNGG 2 cut(s) 965, 1156
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 730, 1007
BsnI GGCC 4 cut(s) 101, 269, 768, 1112
Bsp1286I GDGCHC 2 cut(s) 134, 1087
Bsp143I GATC 4 cut(s) 162, 202, 343, 1073
Bsp1720I GCTNAGC 1 cut(s) 1145
BspACI CCGC 2 cut(s) 555, 751
BspANI GGCC 4 cut(s) 101, 269, 768, 1112
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 903, 1075
BspMAI CTGCAG 2 cut(s) 1135, 1208
BspMI ACCTGC 1 cut(s) 1197
BspPI GGATC 3 cut(s) 197, 1068, 1081
BsrBI CCGCTC 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 6 cut(s) 40, 271, 989, 1005, 1113, 1145
BssECI CCNNGG 1 cut(s) 815
BssMI GATC 4 cut(s) 162, 202, 343, 1073
BssT1I CCWWGG 1 cut(s) 815
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 21, 236, 292
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 1203
BstBAI YACGTR 2 cut(s) 662, 1040
BstC8I GCNNGC 6 cut(s) 99, 553, 731, 805, 928, 1128
BstDEI CTNAG 3 cut(s) 159, 282, 1145
BstENI CCTNNNNNAGG 1 cut(s) 1154
BstF5I GGATG 5 cut(s) 450, 760, 867, 928, 1021
BstKTI GATC 4 cut(s) 165, 205, 346, 1076
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 162, 202, 343, 1073
BstMWI GCNNNNNNNGC 5 cut(s) 65, 94, 107, 380, 1203
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 1201
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 2 cut(s) 1131, 1204
BstSLI GKGCMC 1 cut(s) 1087
BstSNI TACGTA 1 cut(s) 1040
BstV1I GCAGC 4 cut(s) 100, 610, 613, 1117
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 1 cut(s) 1073
BstXI CCANNNNNNTGG 2 cut(s) 461, 1012
BstYI RGATCY 1 cut(s) 1073
BsuI GTATCC 2 cut(s) 888, 1011
BsuRI GGCC 4 cut(s) 101, 269, 768, 1112
BtsCI GGATG 5 cut(s) 450, 760, 867, 928, 1021
BtsIMutI CAGTG 3 cut(s) 297, 996, 1012
BveI ACCTGC 1 cut(s) 1197
Cac8I GCNNGC 6 cut(s) 99, 553, 731, 805, 928, 1128
Cfr13I GGNCC 2 cut(s) 268, 902
Csp6I GTAC 3 cut(s) 389, 811, 1201
CviAII CATG 4 cut(s) 580, 961, 1193, 1198
CviQI GTAC 3 cut(s) 389, 811, 1201
DdeI CTNAG 3 cut(s) 159, 282, 1145
DpnI GATC 4 cut(s) 164, 204, 345, 1075
DpnII GATC 4 cut(s) 162, 202, 343, 1073
DriI GACNNNNNGTC 1 cut(s) 652
EaeI YGGCCR 2 cut(s) 766, 1110
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 68
Eco105I TACGTA 1 cut(s) 1040
Eco130I CCWWGG 1 cut(s) 815
Eco24I GRGCYC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 792
Eco47I GGWCC 1 cut(s) 902
Eco57I CTGAAG 2 cut(s) 243, 1139
EcoNI CCTNNNNNAGG 1 cut(s) 1154
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 792
EcoT14I CCWWGG 1 cut(s) 815
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 815
FaeI CATG 4 cut(s) 583, 964, 1196, 1201
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 2 cut(s) 730, 1007
FatI CATG 4 cut(s) 579, 960, 1192, 1197
FauI CCCGC 1 cut(s) 744
FauNDI CATATG 1 cut(s) 763
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 89, 599, 602, 1131
FokI GGATG 5 cut(s) 437, 767, 874, 935, 1028
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 4 cut(s) 89, 599, 602, 1131
FspBI CTAG 4 cut(s) 591, 636, 696, 816
GluI GCNGC 4 cut(s) 89, 599, 602, 1131
GsaI CCCAGC 2 cut(s) 63, 717
GsuI CTGGAG 1 cut(s) 972
HaeIII GGCC 4 cut(s) 101, 269, 768, 1112
HapII CCGG 3 cut(s) 266, 447, 1177
Hin1II CATG 4 cut(s) 583, 964, 1196, 1201
HincII GTYRAC 2 cut(s) 784, 1106
HindII GTYRAC 2 cut(s) 784, 1106
HinfI GANTC 7 cut(s) 172, 245, 353, 413, 467, 536, 1115
HpaII CCGG 3 cut(s) 266, 447, 1177
HphI GGTGA 5 cut(s) 50, 518, 569, 605, 1157
Hpy166II GTNNAC 4 cut(s) 249, 773, 784, 1106
Hpy188I TCNGA 4 cut(s) 160, 202, 796, 936
Hpy188III TCNNGA 2 cut(s) 230, 746
Hpy8I GTNNAC 4 cut(s) 249, 773, 784, 1106
HpyAV CCTTC 3 cut(s) 267, 680, 1163
HpyCH4III ACNGT 3 cut(s) 21, 236, 292
HpyCH4IV ACGT 4 cut(s) 215, 661, 908, 1039
HpyCH4V TGCA 9 cut(s) 122, 188, 488, 551, 682, 803, 1126, 1133, 1206
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 94, 107, 380, 1203
HpyF3I CTNAG 3 cut(s) 159, 282, 1145
HpySE526I ACGT 4 cut(s) 215, 661, 908, 1039
Hsp92II CATG 4 cut(s) 583, 964, 1196, 1201
Kzo9I GATC 4 cut(s) 162, 202, 343, 1073
LmnI GCTCC 4 cut(s) 380, 595, 763, 991
Lsp1109I GCAGC 4 cut(s) 100, 610, 613, 1117
LweI GCATC 6 cut(s) 109, 459, 538, 745, 913, 1113
MaeI CTAG 4 cut(s) 591, 636, 696, 816
MaeII ACGT 4 cut(s) 215, 661, 908, 1039
MaeIII GTNAC 4 cut(s) 31, 557, 977, 1035
MalI GATC 4 cut(s) 164, 204, 345, 1075
MbiI CCGCTC 1 cut(s) 751
MboI GATC 4 cut(s) 162, 202, 343, 1073
MboII GAAGA 3 cut(s) 85, 595, 602
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 1073
MhlI GDGCHC 2 cut(s) 134, 1087
MluCI AATT 5 cut(s) 178, 183, 455, 567, 617
MlyI GAGTC 2 cut(s) 166, 254
MmeI TCCRAC 2 cut(s) 839, 929
MnlI CCTC 5 cut(s) 34, 288, 502, 845, 1160
MseI TTAA 3 cut(s) 212, 402, 620
MspI CCGG 3 cut(s) 266, 447, 1177
MspR9I CCNGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 5 cut(s) 65, 94, 107, 380, 1203
NdeI CATATG 1 cut(s) 763
NdeII GATC 4 cut(s) 162, 202, 343, 1073
NlaIII CATG 4 cut(s) 583, 964, 1196, 1201
NlaIV GGNNCC 2 cut(s) 903, 1075
NmuCI GTSAC 2 cut(s) 557, 977
NspI RCATGY 1 cut(s) 1201
PaqCI CACCTGC 1 cut(s) 1197
PfeI GAWTC 5 cut(s) 353, 413, 467, 536, 1115
PkrI GCNGC 4 cut(s) 90, 600, 603, 1132
PleI GAGTC 2 cut(s) 166, 253
PpsI GAGTC 2 cut(s) 166, 253
Ppu21I YACGTR 2 cut(s) 662, 1040
Psp1406I AACGTT 1 cut(s) 908
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 2 cut(s) 59, 713
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 903, 1075
PspPI GGNCC 2 cut(s) 268, 902
PstI CTGCAG 2 cut(s) 1135, 1208
PsuI RGATCY 1 cut(s) 1073
RsaI GTAC 3 cut(s) 390, 812, 1202
RsaNI GTAC 3 cut(s) 389, 811, 1201
SaqAI TTAA 3 cut(s) 212, 402, 620
SatI GCNGC 4 cut(s) 89, 599, 602, 1131
Sau3AI GATC 4 cut(s) 162, 202, 343, 1073
Sau96I GGNCC 2 cut(s) 268, 902
SchI GAGTC 2 cut(s) 166, 254
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 134, 1087
SfaNI GCATC 6 cut(s) 109, 459, 538, 745, 913, 1113
SfcI CTRYAG 2 cut(s) 1131, 1204
SinI GGWCC 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 723, 746
SmoI CTYRAG 2 cut(s) 723, 746
SnaBI TACGTA 1 cut(s) 1040
Sse9I AATT 5 cut(s) 178, 183, 455, 567, 617
SsiI CCGC 2 cut(s) 555, 751
SspI AATATT 1 cut(s) 428
SspMI CTAG 4 cut(s) 591, 636, 696, 816
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 815
TaaI ACNGT 3 cut(s) 21, 236, 292
TaiI ACGT 4 cut(s) 218, 664, 911, 1042
TaqI TCGA 1 cut(s) 889
TasI AATT 5 cut(s) 178, 183, 455, 567, 617
TatI WGTACW 1 cut(s) 1200
TfiI GAWTC 5 cut(s) 353, 413, 467, 536, 1115
Tru1I TTAA 3 cut(s) 212, 402, 620
Tru9I TTAA 3 cut(s) 212, 402, 620
TscAI CASTG 3 cut(s) 297, 996, 1012
TseFI GTSAC 2 cut(s) 557, 977
TseI GCWGC 4 cut(s) 88, 598, 601, 1130
Tsp45I GTSAC 2 cut(s) 557, 977
TspDTI ATGAA 5 cut(s) 579, 596, 642, 681, 977
TspRI CASTG 3 cut(s) 297, 996, 1012
VpaK11BI GGWCC 1 cut(s) 902
XagI CCTNNNNNAGG 1 cut(s) 1154
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 1201
XmaJI CCTAGG 1 cut(s) 815
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 4 cut(s) 591, 636, 696, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.