Rh7BG086100

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016846
Physical Location & Seq
Reverse (-)
6259855 .. 6264054
4200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG086100.1

Sequence Viewer

Length: 873 bp
ATGTTGAGTACAAGATTACAGTTTGGAAATGTTAGTGGAGAGGACAGGTTTGACATTGCTGGGAAAGCAAGGAAGAGATACAATCAGCAGCAAAAGCAGGCCAGGAAAGCAAAGAATGATGCAAACCAGAGCCCCAAAGAGAGCAAAGTTGTGGTTTCTGAGATCAAAGAGACTCAAAATTCAATTGCAAAGCCTTGTTCTGATCCCACTTTAACGCCAAGGAGTAATCTTGACAGGTTTTTGGAGTCTACTACGCCTTCAGTTCCAGCCCAGTATTTCTCTAAGACGACAATGAGAACTTGTGATGCGGAGTGTCAGCCTTACTTCGCTTTGAATGATCTTTGGGAATCGTTTAGGGAATGGAGTGCTTATGGAGCAGGAGTACCATTAGTCCTTAACAAAAGTGATTCTGTTATTCAATATTATGTTCCTTATTTATCCGGTATCCAATTATATGGCGAATCTGCTGTGAAGTCAAGTGCAAAGCAAAGGCAAGTTGGTGAGGACAATGATGATGACGACATTTTGGATTCAAGTAGTGATGCAAGCAGTGACTATGAAATTGAAAACCACATGAAGACTACTAGGGAGCAGCAGCATATTCTTCACCAATTAAACAATGAAGTTTCTAGTAGAATGGACGGGTTGTCCATAGGTGATGAACACCCCATATTGCAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGACTTCTCAAGGCTTGCTTTTTGAGTATCTTGAGCGGGACGCTCCATATGGCCGTGAACCATTGGCTGACAAGATATCAGACCTTGCACGCAAGTACCCTAGGTTGAAAACATTGAGAAGTTGCAACTTACTGCGAGGCAGTTGGATGTCAGTAGCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

290

Amino Acids

32.69

Weight (kDa)

5.2

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 75 - 290 2.5e-61 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 745
AccI GTMKAC 1 cut(s) 248
AciI CCGC 2 cut(s) 308, 745
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 760
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 10, 384, 806
AgsI TTSAA 6 cut(s) 183, 334, 419, 534, 566, 817
AhdI GACNNNNNGTC 1 cut(s) 646
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 2 cut(s) 707, 866
AluI AGCT 2 cut(s) 707, 866
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 197
AoxI GGCC 2 cut(s) 99, 760
ApeKI GCWGC 3 cut(s) 88, 592, 595
ApoI RAATTY 1 cut(s) 178
AspA2I CCTAGG 1 cut(s) 809
AsuHPI GGTGA 3 cut(s) 512, 599, 668
AvrII CCTAGG 1 cut(s) 809
BaeI ACNNNNGTAYC 2 cut(s) 788, 821
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 584
BbvI GCAGC 3 cut(s) 100, 604, 607
BccI CCATC 1 cut(s) 692
BceAI ACGGC 1 cut(s) 747
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 4 cut(s) 585, 630, 690, 810
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 3 cut(s) 89, 593, 596
BlnI CCTAGG 1 cut(s) 809
BlsI GCNGC 3 cut(s) 90, 594, 597
Bme1390I CCNGG 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 646
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 3 cut(s) 109, 295, 532
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 702, 761
BsaJI CCNNGG 2 cut(s) 218, 809
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 218, 809
BseGI GGATG 1 cut(s) 861
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 271
BseXI GCAGC 3 cut(s) 100, 604, 607
BseYI CCCAGC 2 cut(s) 59, 707
BshFI GGCC 2 cut(s) 101, 762
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 2 cut(s) 724, 761
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 724, 761
BsnI GGCC 2 cut(s) 101, 762
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 162, 202, 337
BspACI CCGC 2 cut(s) 308, 745
BspANI GGCC 2 cut(s) 101, 762
BspCNI CTCAG 1 cut(s) 151
BspPI GGATC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 745
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 218, 809
BssMI GATC 3 cut(s) 162, 202, 337
BssT1I CCWWGG 2 cut(s) 218, 809
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 4 cut(s) 99, 547, 725, 799
BstDEI CTNAG 2 cut(s) 159, 282
BstF5I GGATG 1 cut(s) 861
BstKTI GATC 3 cut(s) 165, 205, 340
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 162, 202, 337
BstMWI GCNNNNNNNGC 4 cut(s) 65, 94, 107, 374
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 100, 604, 607
BstV2I GAAGAC 1 cut(s) 584
BstXI CCANNNNNNTGG 1 cut(s) 455
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 2 cut(s) 101, 762
BtsCI GGATG 1 cut(s) 861
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 4 cut(s) 99, 547, 725, 799
CseI GACGC 1 cut(s) 758
Csp6I GTAC 3 cut(s) 9, 383, 805
CviAII CATG 1 cut(s) 574
CviQI GTAC 3 cut(s) 9, 383, 805
DdeI CTNAG 2 cut(s) 159, 282
DpnI GATC 3 cut(s) 164, 204, 339
DpnII GATC 3 cut(s) 162, 202, 337
DriI GACNNNNNGTC 1 cut(s) 646
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 646
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 218, 809
Eco24I GRGCYC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 786
Eco57I CTGAAG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 786
EcoT14I CCWWGG 2 cut(s) 218, 809
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 2 cut(s) 218, 809
FaeI CATG 1 cut(s) 577
FalI AAGNNNNNCTT 2 cut(s) 711, 743
FaqI GGGAC 2 cut(s) 724, 761
FatI CATG 1 cut(s) 573
FauI CCCGC 1 cut(s) 738
FauNDI CATATG 1 cut(s) 757
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 89, 593, 596
FokI GGATG 1 cut(s) 868
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 89, 593, 596
FspBI CTAG 4 cut(s) 585, 630, 690, 810
GluI GCNGC 3 cut(s) 89, 593, 596
GsaI CCCAGC 2 cut(s) 63, 711
HaeIII GGCC 2 cut(s) 101, 762
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 758
Hin1II CATG 1 cut(s) 577
HinfI GANTC 6 cut(s) 172, 245, 347, 407, 461, 530
HpaII CCGG 1 cut(s) 441
HphI GGTGA 3 cut(s) 512, 599, 668
Hpy166II GTNNAC 2 cut(s) 249, 767
Hpy188I TCNGA 3 cut(s) 160, 202, 790
Hpy188III TCNNGA 2 cut(s) 230, 740
Hpy8I GTNNAC 2 cut(s) 249, 767
HpyAV CCTTC 2 cut(s) 267, 674
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 7 cut(s) 122, 188, 482, 545, 676, 797, 834
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 94, 107, 374
HpyF3I CTNAG 2 cut(s) 159, 282
Hsp92II CATG 1 cut(s) 577
Kzo9I GATC 3 cut(s) 162, 202, 337
LmnI GCTCC 3 cut(s) 374, 589, 757
Lsp1109I GCAGC 3 cut(s) 100, 604, 607
LweI GCATC 3 cut(s) 109, 295, 532
MaeI CTAG 4 cut(s) 585, 630, 690, 810
MaeIII GTNAC 1 cut(s) 551
MalI GATC 3 cut(s) 164, 204, 339
MbiI CCGCTC 1 cut(s) 745
MboI GATC 3 cut(s) 162, 202, 337
MboII GAAGA 3 cut(s) 85, 589, 596
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 5 cut(s) 178, 183, 449, 561, 611
MlyI GAGTC 2 cut(s) 166, 254
MmeI TCCRAC 1 cut(s) 833
MnlI CCTC 3 cut(s) 34, 496, 839
MseI TTAA 3 cut(s) 212, 396, 614
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 4 cut(s) 65, 94, 107, 374
NdeI CATATG 1 cut(s) 757
NdeII GATC 3 cut(s) 162, 202, 337
NlaIII CATG 1 cut(s) 577
NmuCI GTSAC 1 cut(s) 551
PfeI GAWTC 4 cut(s) 347, 407, 461, 530
PkrI GCNGC 3 cut(s) 90, 594, 597
PleI GAGTC 2 cut(s) 166, 253
PpsI GAGTC 2 cut(s) 166, 253
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 2 cut(s) 59, 707
PspGI CCWGG 1 cut(s) 101
RsaI GTAC 3 cut(s) 10, 384, 806
RsaNI GTAC 3 cut(s) 9, 383, 805
SaqAI TTAA 3 cut(s) 212, 396, 614
SatI GCNGC 3 cut(s) 89, 593, 596
Sau3AI GATC 3 cut(s) 162, 202, 337
SchI GAGTC 2 cut(s) 166, 254
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 134
SetI ASST 7 cut(s) 50, 239, 658, 709, 795, 815, 868
SfaNI GCATC 3 cut(s) 109, 295, 532
SmlI CTYRAG 2 cut(s) 717, 740
SmoI CTYRAG 2 cut(s) 717, 740
Sse9I AATT 5 cut(s) 178, 183, 449, 561, 611
SsiI CCGC 2 cut(s) 308, 745
SspI AATATT 1 cut(s) 422
SspMI CTAG 4 cut(s) 585, 630, 690, 810
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 2 cut(s) 218, 809
TaaI ACNGT 1 cut(s) 21
TasI AATT 5 cut(s) 178, 183, 449, 561, 611
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 4 cut(s) 347, 407, 461, 530
Tru1I TTAA 3 cut(s) 212, 396, 614
Tru9I TTAA 3 cut(s) 212, 396, 614
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 3 cut(s) 88, 592, 595
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 4 cut(s) 573, 590, 636, 675
TspRI CASTG 1 cut(s) 556
XapI RAATTY 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 4 cut(s) 585, 630, 690, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.