Rh7DG078200

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016846
Physical Location & Seq
Forward (+)
6220612 .. 6224554
3943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG078200.1

Sequence Viewer

Length: 924 bp
ATGAGGGGGTCGAGAACTTGTGATGTGGAGTTTCAGTCTTACTTCGCTTTAAATGATCTTTGGGAATCGTTTAGGGAATGGAGTGCTTATGGAGCAGGAGTACCATTAGTCCTTAACAAAAGTGATTCTGTTATTCAATATTATGTTCCTTATTTATCCGGTATCCAATTATATGGCGAATCTGCTGTGAAGTCAAGTGCAAAGCAAAGGCAAGTTGGTGAGGACAATGATGATGACTACTATTTGGATTCAAGTAGTGATGCAAGCAGTGACTATGAAATTGAAAAACTCATGAAGACTACTAGGGAGCAGCAGCATATTCTTCACCAATTAAACAATGAAGTTTCTAGTAGAATGGACGGGTTGTCCATATGTGATGAACACCCCATATTGCAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGACTTCTCAAGGCTTGCTTTTTGAGTATCTTGAGCGGGATGCTCCATATGGCCGTGAACCATTGGCTGACAAGATATCAGACCTTGCACGCAAGTACCCTAGGTTGAAAACATTGAGAAGTTGCGACTTACTGCGAGGCAGTTGGATGTCAGTAGCTTGGTATCCCATATATCGAATACCTATGGGTCCAACGTTGAAAGATTTGGATGCTTGCTTTCTGACATATCATTCTCTTTCAACACCCATGAAAGGTAGTGGAAGTGACCAAGCTCCAGTGATGGTGTATCCCAGTGAGGTGGATGGTGTCCCAAAGATTTCGTTGCGTATTTTTGGATTGGCTTCATATAAGCTCAAAGGATCCTTGTGGGCACAAAATGGTATAGAGTGTCAACTGGCCGATTCCCTGATGCAAGCTGCAGACAACTGGCTTAGCCTGCTTCAGGTCAATCACCCTGACTTCCGGTTCTTTGCTTCACATGGCATGTACTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

307

Amino Acids

34.68

Weight (kDa)

4.91

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 11 - 299 8.8e-98 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 909
Acc36I ACCTGC 1 cut(s) 909
AccBSI CCGCTC 1 cut(s) 463
AciI CCGC 1 cut(s) 463
AclI AACGTT 1 cut(s) 620
AclWI GGATC 2 cut(s) 780, 793
AcoI YGGCCR 2 cut(s) 478, 822
AcuI CTGAAG 1 cut(s) 851
AfaI GTAC 3 cut(s) 102, 524, 914
AfiI CCNNNNNNNGG 2 cut(s) 677, 868
AgsI TTSAA 6 cut(s) 137, 252, 284, 535, 625, 666
AhdI GACNNNNNGTC 1 cut(s) 364
AluBI AGCT 5 cut(s) 425, 584, 698, 778, 842
AluI AGCT 5 cut(s) 425, 584, 698, 778, 842
AlwI GGATC 2 cut(s) 780, 793
AoxI GGCC 2 cut(s) 478, 822
ApeKI GCWGC 3 cut(s) 310, 313, 842
AspA2I CCTAGG 1 cut(s) 527
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 3 cut(s) 230, 317, 869
AvaII GGWCC 1 cut(s) 614
AvrII CCTAGG 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 799
BaeI ACNNNNGTAYC 2 cut(s) 506, 539
BamHI GGATCC 1 cut(s) 785
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 322, 325, 829
BccI CCATC 3 cut(s) 410, 700, 722
BceAI ACGGC 1 cut(s) 465
BciVI GTATCC 3 cut(s) 173, 600, 723
BfaI CTAG 4 cut(s) 303, 348, 408, 528
BfmI CTRYAG 2 cut(s) 843, 916
BfuAI ACCTGC 1 cut(s) 909
BfuI GTATCC 3 cut(s) 173, 600, 723
BisI GCNGC 3 cut(s) 311, 314, 843
BlnI CCTAGG 1 cut(s) 527
BlpI GCTNAGC 1 cut(s) 857
BlsI GCNGC 3 cut(s) 312, 315, 844
Bme18I GGWCC 1 cut(s) 614
BmeRI GACNNNNNGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 2 cut(s) 615, 787
BmrI ACTGGG 1 cut(s) 711
BmsI GCATC 4 cut(s) 250, 457, 625, 825
BmuI ACTGGG 1 cut(s) 711
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 684
Bpu1102I GCTNAGC 1 cut(s) 857
BpuEI CTTGAG 2 cut(s) 420, 479
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 2 cut(s) 158, 888
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 677, 868
Bse1I ACTGG 4 cut(s) 701, 717, 825, 857
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 4 cut(s) 472, 579, 640, 733
BseLI CCNNNNNNNGG 2 cut(s) 677, 868
BseNI ACTGG 4 cut(s) 701, 717, 825, 857
BseSI GKGCMC 1 cut(s) 799
BseXI GCAGC 3 cut(s) 322, 325, 829
BseYI CCCAGC 1 cut(s) 425
BshFI GGCC 2 cut(s) 480, 824
BsiSI CCGG 2 cut(s) 159, 889
BslFI GGGAC 2 cut(s) 442, 719
BslI CCNNNNNNNGG 2 cut(s) 677, 868
BsmFI GGGAC 2 cut(s) 442, 719
BsnI GGCC 2 cut(s) 480, 824
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 2 cut(s) 55, 785
Bsp1720I GCTNAGC 1 cut(s) 857
BspACI CCGC 1 cut(s) 463
BspANI GGCC 2 cut(s) 480, 824
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 615, 787
BspMAI CTGCAG 2 cut(s) 847, 920
BspMI ACCTGC 1 cut(s) 909
BspPI GGATC 2 cut(s) 780, 793
BsrBI CCGCTC 1 cut(s) 463
BsrI ACTGG 4 cut(s) 701, 717, 825, 857
BssECI CCNNGG 1 cut(s) 527
BssMI GATC 2 cut(s) 55, 785
BssT1I CCWWGG 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 915
BstC8I GCNNGC 6 cut(s) 265, 443, 517, 640, 840, 863
BstDEI CTNAG 1 cut(s) 857
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 4 cut(s) 472, 579, 640, 733
BstKTI GATC 2 cut(s) 58, 788
BstMBI GATC 2 cut(s) 55, 785
BstMWI GCNNNNNNNGC 3 cut(s) 92, 862, 915
BstNSI RCATGY 1 cut(s) 913
BstSFI CTRYAG 2 cut(s) 843, 916
BstSLI GKGCMC 1 cut(s) 799
BstV1I GCAGC 3 cut(s) 322, 325, 829
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 785
BstXI CCANNNNNNTGG 2 cut(s) 173, 724
BstYI RGATCY 1 cut(s) 785
BsuI GTATCC 3 cut(s) 173, 600, 723
BsuRI GGCC 2 cut(s) 480, 824
BtsCI GGATG 4 cut(s) 472, 579, 640, 733
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 3 cut(s) 274, 708, 724
BveI ACCTGC 1 cut(s) 909
Cac8I GCNNGC 6 cut(s) 265, 443, 517, 640, 840, 863
CciI TCATGA 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 3 cut(s) 101, 523, 913
CviAII CATG 4 cut(s) 292, 673, 905, 910
CviQI GTAC 3 cut(s) 101, 523, 913
DdeI CTNAG 1 cut(s) 857
DpnI GATC 2 cut(s) 57, 787
DpnII GATC 2 cut(s) 55, 785
DraI TTTAAA 1 cut(s) 51
DriI GACNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 2 cut(s) 478, 822
Eam1105I GACNNNNNGTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 527
Eco32I GATATC 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 851
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoRV GATATC 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 4 cut(s) 295, 676, 908, 913
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 2 cut(s) 442, 719
FatI CATG 4 cut(s) 291, 672, 904, 909
FauI CCCGC 1 cut(s) 456
FauNDI CATATG 2 cut(s) 371, 475
Fnu4HI GCNGC 3 cut(s) 311, 314, 843
FokI GGATG 4 cut(s) 479, 586, 647, 740
Fsp4HI GCNGC 3 cut(s) 311, 314, 843
FspBI CTAG 4 cut(s) 303, 348, 408, 528
GluI GCNGC 3 cut(s) 311, 314, 843
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 684
HaeIII GGCC 2 cut(s) 480, 824
HapII CCGG 2 cut(s) 159, 889
Hin1II CATG 4 cut(s) 295, 676, 908, 913
HincII GTYRAC 1 cut(s) 818
HindII GTYRAC 1 cut(s) 818
HinfI GANTC 5 cut(s) 65, 125, 179, 248, 827
HpaII CCGG 2 cut(s) 159, 889
HphI GGTGA 3 cut(s) 230, 317, 869
Hpy166II GTNNAC 2 cut(s) 485, 818
Hpy188I TCNGA 2 cut(s) 508, 648
Hpy188III TCNNGA 3 cut(s) 12, 292, 458
Hpy8I GTNNAC 2 cut(s) 485, 818
HpyAV CCTTC 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 620
HpyCH4V TGCA 7 cut(s) 200, 263, 394, 515, 838, 845, 918
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 862, 915
HpyF3I CTNAG 1 cut(s) 857
HpySE526I ACGT 1 cut(s) 620
Hsp92II CATG 4 cut(s) 295, 676, 908, 913
Kzo9I GATC 2 cut(s) 55, 785
LmnI GCTCC 4 cut(s) 92, 307, 475, 703
Lsp1109I GCAGC 3 cut(s) 322, 325, 829
LweI GCATC 4 cut(s) 250, 457, 625, 825
MaeI CTAG 4 cut(s) 303, 348, 408, 528
MaeII ACGT 1 cut(s) 620
MaeIII GTNAC 2 cut(s) 269, 689
MalI GATC 2 cut(s) 57, 787
MbiI CCGCTC 1 cut(s) 463
MboI GATC 2 cut(s) 55, 785
MboII GAAGA 2 cut(s) 307, 314
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 1 cut(s) 799
MluCI AATT 3 cut(s) 167, 279, 329
MmeI TCCRAC 2 cut(s) 551, 641
MnlI CCTC 3 cut(s) 214, 557, 715
MseI TTAA 3 cut(s) 50, 114, 332
MspI CCGG 2 cut(s) 159, 889
MwoI GCNNNNNNNGC 3 cut(s) 92, 862, 915
NdeI CATATG 2 cut(s) 371, 475
NdeII GATC 2 cut(s) 55, 785
NlaIII CATG 4 cut(s) 295, 676, 908, 913
NlaIV GGNNCC 2 cut(s) 615, 787
NmuCI GTSAC 2 cut(s) 269, 689
NspI RCATGY 1 cut(s) 913
PagI TCATGA 1 cut(s) 291
PaqCI CACCTGC 1 cut(s) 909
PfeI GAWTC 5 cut(s) 65, 125, 179, 248, 827
PkrI GCNGC 3 cut(s) 312, 315, 844
Psp1406I AACGTT 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 615, 787
PspPI GGNCC 1 cut(s) 614
PstI CTGCAG 2 cut(s) 847, 920
PsuI RGATCY 1 cut(s) 785
RsaI GTAC 3 cut(s) 102, 524, 914
RsaNI GTAC 3 cut(s) 101, 523, 913
SaqAI TTAA 3 cut(s) 50, 114, 332
SatI GCNGC 3 cut(s) 311, 314, 843
Sau3AI GATC 2 cut(s) 55, 785
Sau96I GGNCC 1 cut(s) 614
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 4 cut(s) 250, 457, 625, 825
SfcI CTRYAG 2 cut(s) 843, 916
SinI GGWCC 1 cut(s) 614
SmlI CTYRAG 2 cut(s) 435, 458
SmoI CTYRAG 2 cut(s) 435, 458
Sse9I AATT 3 cut(s) 167, 279, 329
SsiI CCGC 1 cut(s) 463
SspI AATATT 1 cut(s) 140
SspMI CTAG 4 cut(s) 303, 348, 408, 528
StyI CCWWGG 1 cut(s) 527
TaiI ACGT 1 cut(s) 623
TaqI TCGA 2 cut(s) 11, 601
TasI AATT 3 cut(s) 167, 279, 329
TatI WGTACW 1 cut(s) 912
TfiI GAWTC 5 cut(s) 65, 125, 179, 248, 827
Tru1I TTAA 3 cut(s) 50, 114, 332
Tru9I TTAA 3 cut(s) 50, 114, 332
TscAI CASTG 3 cut(s) 274, 708, 724
TseFI GTSAC 2 cut(s) 269, 689
TseI GCWGC 3 cut(s) 310, 313, 842
Tsp45I GTSAC 2 cut(s) 269, 689
TspDTI ATGAA 6 cut(s) 291, 308, 354, 393, 689, 759
TspRI CASTG 3 cut(s) 274, 708, 724
VpaK11BI GGWCC 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 866
XceI RCATGY 1 cut(s) 913
XmaJI CCTAGG 1 cut(s) 527
XspI CTAG 4 cut(s) 303, 348, 408, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.