Rroxscaffold_3G00268480

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016846
Physical Location & Seq
Reverse (-)
61566679 .. 61570637
3959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268480.1

Sequence Viewer

Length: 1218 bp
ATGATGAGTACAAGATTACAGTTTGGAAATGTTAGTGGAGAGGACAGGTTTTACATTGCTGGGAAAGCAAAGAAGAGATACAATCAGCAGCAAAAGCAGGCCAGGAAAGCAAAGAATGATGCAAACCAGAGCCCCAAAGAGAGCAAAGTTGTGGTTTCTGAGATCAAAGAGACTCAAAATTCAATTGCAAAGCCTTGTTCTGATCCCACTTTAACGTCAAGGAGTAATCTTGACAGGTTTTTGGAGTCTACTACGCCTTCAGTTCCGGCCCAGTATTTCTCTAAGACGACAATTAGGGAGTTGAGAACTTGTGATAAGGAGGTTCAGCCTTACTTCGCTTTGAATGATCTTTGGGAATCGTTTAGGGAATGGAGTGCTTATGGAGCAGGAGTACCATTAGTCCTTAACAAAAGTGATTCTGTTATTCAATATTATGTTCCTTATTTATCCGGTATCCAATTATATGGCGAATCTGCTGTGAAGTCAAGTGCAAAGCAAAGGCAAGTTGGTGAGGACATTGATGTTGACCACTATTTGGATTCAAGTAGTGATGCAAGCAGTGACTATGAAATTTTTGAAAAACACATGAAGACTACTAGGGAGCAGCAGCATATTCTTCACCAATTAAACAATGAAGTTTCTAGTAGAATGGACAGGTTGTCCATACATGACGAACACCCCATATTGCAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGACTTCTCAAGGCTTACTTTTTGAGTATCTTGAGCAGGATGCTCCATATGGCCGTGAACCATTGGCTGACAAGATATCAGACCTTGCACACAAGTACCCTAGGTTGAAAACATTGAGAAGTTGCGACTTACTGCGAGGCAGTTGGATGTCAGTAGCTTGGTATCCCATATATCGAATACCTATGGGTCCAACGTTGAAAGATTTGGATGCTTGCTTTCTGACATATCATTCTCTTTCAACACCCGTGAAAGGTAGTGGAAGTGACCAAGCTCCAGTGATGGTGTATCCCAGTGAGATGGATGGTGTCCCAAAGATTTCGTTATGTATTTTTGGATTGGCTTCGTATAAGCTCAAAGGATCCTTGTGGGCACAAAATGGTATAGAGTGTCAACTGGCCGATTCCCTGATGCAAGCTGCAGACAACTGGCTTAGCCTGCTTCAGGTCAATCACCCTGACTTCCGGTTCTTCGCTTCACATGGCATGTACTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

405

Amino Acids

45.82

Weight (kDa)

5.97

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 75 - 397 3.1e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1203
Acc36I ACCTGC 1 cut(s) 1203
AccB7I CCANNNNNTGG 1 cut(s) 535
AccI GTMKAC 1 cut(s) 248
AclI AACGTT 1 cut(s) 914
AclWI GGATC 3 cut(s) 197, 1074, 1087
AcoI YGGCCR 2 cut(s) 772, 1116
AcsI RAATTY 2 cut(s) 178, 570
AcuI CTGAAG 2 cut(s) 243, 1145
AfaI GTAC 4 cut(s) 10, 393, 818, 1208
AfiI CCNNNNNNNGG 3 cut(s) 535, 971, 1162
AgsI TTSAA 8 cut(s) 183, 343, 428, 543, 578, 829, 919, 960
AhdI GACNNNNNGTC 1 cut(s) 658
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 5 cut(s) 719, 878, 992, 1072, 1136
AluI AGCT 5 cut(s) 719, 878, 992, 1072, 1136
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 3 cut(s) 197, 1074, 1087
AoxI GGCC 4 cut(s) 99, 267, 772, 1116
ApeKI GCWGC 4 cut(s) 88, 604, 607, 1136
ApoI RAATTY 2 cut(s) 178, 570
AspA2I CCTAGG 1 cut(s) 821
AspS9I GGNCC 2 cut(s) 268, 908
AsuHPI GGTGA 3 cut(s) 521, 611, 1163
AvaII GGWCC 1 cut(s) 908
AvrII CCTAGG 1 cut(s) 821
BaeGI GKGCMC 1 cut(s) 1093
BaeI ACNNNNGTAYC 2 cut(s) 800, 833
BamHI GGATCC 1 cut(s) 1079
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 596
BbvI GCAGC 4 cut(s) 100, 616, 619, 1123
BccI CCATC 4 cut(s) 704, 994, 1012, 1016
BceAI ACGGC 1 cut(s) 759
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 3 cut(s) 464, 894, 1017
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 4 cut(s) 597, 642, 702, 822
BfmI CTRYAG 2 cut(s) 1137, 1210
BfuAI ACCTGC 1 cut(s) 1203
BfuI GTATCC 3 cut(s) 464, 894, 1017
BisI GCNGC 4 cut(s) 89, 605, 608, 1137
BlnI CCTAGG 1 cut(s) 821
BlpI GCTNAGC 1 cut(s) 1151
BlsI GCNGC 4 cut(s) 90, 606, 609, 1138
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 908
BmeRI GACNNNNNGTC 1 cut(s) 658
BmgT120I GGNCC 2 cut(s) 268, 908
BmiI GGNNCC 2 cut(s) 909, 1081
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 2 cut(s) 265, 1005
BmsI GCATC 5 cut(s) 109, 541, 751, 919, 1119
BmuI ACTGGG 2 cut(s) 265, 1005
BpiI GAAGAC 1 cut(s) 596
BpmI CTGGAG 1 cut(s) 978
Bpu1102I GCTNAGC 1 cut(s) 1151
BpuEI CTTGAG 2 cut(s) 714, 773
BsaJI CCNNGG 1 cut(s) 821
BsaWI WCCGGW 2 cut(s) 449, 1182
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 535, 971, 1162
Bse1I ACTGG 5 cut(s) 271, 995, 1011, 1119, 1151
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 821
BseGI GGATG 4 cut(s) 766, 873, 934, 1027
BseLI CCNNNNNNNGG 3 cut(s) 535, 971, 1162
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 5 cut(s) 271, 995, 1011, 1119, 1151
BseSI GKGCMC 1 cut(s) 1093
BseXI GCAGC 4 cut(s) 100, 616, 619, 1123
BseYI CCCAGC 2 cut(s) 59, 719
BshFI GGCC 4 cut(s) 101, 269, 774, 1118
BsiSI CCGG 3 cut(s) 266, 450, 1183
BslFI GGGAC 2 cut(s) 736, 1013
BslI CCNNNNNNNGG 3 cut(s) 535, 971, 1162
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 736, 1013
BsnI GGCC 4 cut(s) 101, 269, 774, 1118
Bsp1286I GDGCHC 2 cut(s) 134, 1093
Bsp143I GATC 4 cut(s) 162, 202, 346, 1079
Bsp1720I GCTNAGC 1 cut(s) 1151
BspANI GGCC 4 cut(s) 101, 269, 774, 1118
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 909, 1081
BspMAI CTGCAG 2 cut(s) 1141, 1214
BspMI ACCTGC 1 cut(s) 1203
BspPI GGATC 3 cut(s) 197, 1074, 1087
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 5 cut(s) 271, 995, 1011, 1119, 1151
BssECI CCNNGG 1 cut(s) 821
BssMI GATC 4 cut(s) 162, 202, 346, 1079
BssT1I CCWWGG 1 cut(s) 821
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 1209
BstC8I GCNNGC 5 cut(s) 99, 556, 934, 1134, 1157
BstDEI CTNAG 3 cut(s) 159, 282, 1151
BstENI CCTNNNNNAGG 1 cut(s) 1160
BstF5I GGATG 4 cut(s) 766, 873, 934, 1027
BstKTI GATC 4 cut(s) 165, 205, 349, 1082
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 162, 202, 346, 1079
BstMWI GCNNNNNNNGC 6 cut(s) 65, 94, 107, 383, 1156, 1209
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 1207
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 2 cut(s) 1137, 1210
BstSLI GKGCMC 1 cut(s) 1093
BstV1I GCAGC 4 cut(s) 100, 616, 619, 1123
BstV2I GAAGAC 1 cut(s) 596
BstX2I RGATCY 1 cut(s) 1079
BstXI CCANNNNNNTGG 2 cut(s) 464, 1018
BstYI RGATCY 1 cut(s) 1079
BsuI GTATCC 3 cut(s) 464, 894, 1017
BsuRI GGCC 4 cut(s) 101, 269, 774, 1118
BtsCI GGATG 4 cut(s) 766, 873, 934, 1027
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 565, 1002, 1018
BveI ACCTGC 1 cut(s) 1203
Cac8I GCNNGC 5 cut(s) 99, 556, 934, 1134, 1157
Cfr13I GGNCC 2 cut(s) 268, 908
Csp6I GTAC 4 cut(s) 9, 392, 817, 1207
CviAII CATG 4 cut(s) 586, 668, 1199, 1204
CviQI GTAC 4 cut(s) 9, 392, 817, 1207
DdeI CTNAG 3 cut(s) 159, 282, 1151
DpnI GATC 4 cut(s) 164, 204, 348, 1081
DpnII GATC 4 cut(s) 162, 202, 346, 1079
DriI GACNNNNNGTC 1 cut(s) 658
EaeI YGGCCR 2 cut(s) 772, 1116
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 658
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 821
Eco24I GRGCYC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 908
Eco57I CTGAAG 2 cut(s) 243, 1145
EcoNI CCTNNNNNAGG 1 cut(s) 1160
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 798
EcoT14I CCWWGG 1 cut(s) 821
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 821
FaeI CATG 4 cut(s) 589, 671, 1202, 1207
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 2 cut(s) 736, 1013
FatI CATG 4 cut(s) 585, 667, 1198, 1203
FauNDI CATATG 1 cut(s) 769
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 89, 605, 608, 1137
FokI GGATG 4 cut(s) 773, 880, 941, 1034
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 4 cut(s) 89, 605, 608, 1137
FspBI CTAG 4 cut(s) 597, 642, 702, 822
GluI GCNGC 4 cut(s) 89, 605, 608, 1137
GsaI CCCAGC 2 cut(s) 63, 723
GsuI CTGGAG 1 cut(s) 978
HaeIII GGCC 4 cut(s) 101, 269, 774, 1118
HapII CCGG 3 cut(s) 266, 450, 1183
Hin1II CATG 4 cut(s) 589, 671, 1202, 1207
HincII GTYRAC 2 cut(s) 526, 1112
HindII GTYRAC 2 cut(s) 526, 1112
HinfI GANTC 7 cut(s) 172, 245, 356, 416, 470, 539, 1121
HpaII CCGG 3 cut(s) 266, 450, 1183
HphI GGTGA 3 cut(s) 521, 611, 1163
Hpy166II GTNNAC 4 cut(s) 249, 526, 779, 1112
Hpy188I TCNGA 4 cut(s) 160, 202, 802, 942
Hpy188III TCNNGA 2 cut(s) 230, 752
Hpy8I GTNNAC 4 cut(s) 249, 526, 779, 1112
HpyAV CCTTC 2 cut(s) 267, 686
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 2 cut(s) 215, 914
HpyCH4V TGCA 9 cut(s) 122, 188, 491, 554, 688, 809, 1132, 1139, 1212
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 94, 107, 383, 1156, 1209
HpyF3I CTNAG 3 cut(s) 159, 282, 1151
HpySE526I ACGT 2 cut(s) 215, 914
Hsp92II CATG 4 cut(s) 589, 671, 1202, 1207
Kzo9I GATC 4 cut(s) 162, 202, 346, 1079
LmnI GCTCC 4 cut(s) 383, 601, 769, 997
Lsp1109I GCAGC 4 cut(s) 100, 616, 619, 1123
LweI GCATC 5 cut(s) 109, 541, 751, 919, 1119
MaeI CTAG 4 cut(s) 597, 642, 702, 822
MaeII ACGT 2 cut(s) 215, 914
MaeIII GTNAC 2 cut(s) 560, 983
MalI GATC 4 cut(s) 164, 204, 348, 1081
MboI GATC 4 cut(s) 162, 202, 346, 1079
MboII GAAGA 4 cut(s) 85, 601, 608, 1180
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 1079
MhlI GDGCHC 2 cut(s) 134, 1093
MluCI AATT 6 cut(s) 178, 183, 291, 458, 570, 623
MlyI GAGTC 2 cut(s) 166, 254
MmeI TCCRAC 2 cut(s) 845, 935
MnlI CCTC 4 cut(s) 34, 313, 505, 851
MseI TTAA 3 cut(s) 212, 405, 626
MspI CCGG 3 cut(s) 266, 450, 1183
MspR9I CCNGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 6 cut(s) 65, 94, 107, 383, 1156, 1209
NdeI CATATG 1 cut(s) 769
NdeII GATC 4 cut(s) 162, 202, 346, 1079
NlaIII CATG 4 cut(s) 589, 671, 1202, 1207
NlaIV GGNNCC 2 cut(s) 909, 1081
NmuCI GTSAC 2 cut(s) 560, 983
NspI RCATGY 1 cut(s) 1207
PaqCI CACCTGC 1 cut(s) 1203
PfeI GAWTC 5 cut(s) 356, 416, 470, 539, 1121
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 4 cut(s) 90, 606, 609, 1138
PleI GAGTC 2 cut(s) 166, 253
PpsI GAGTC 2 cut(s) 166, 253
Psp1406I AACGTT 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 2 cut(s) 59, 719
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 909, 1081
PspPI GGNCC 2 cut(s) 268, 908
PstI CTGCAG 2 cut(s) 1141, 1214
PsuI RGATCY 1 cut(s) 1079
RsaI GTAC 4 cut(s) 10, 393, 818, 1208
RsaNI GTAC 4 cut(s) 9, 392, 817, 1207
SaqAI TTAA 3 cut(s) 212, 405, 626
SatI GCNGC 4 cut(s) 89, 605, 608, 1137
Sau3AI GATC 4 cut(s) 162, 202, 346, 1079
Sau96I GGNCC 2 cut(s) 268, 908
SchI GAGTC 2 cut(s) 166, 254
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 134, 1093
SfaNI GCATC 5 cut(s) 109, 541, 751, 919, 1119
SfcI CTRYAG 2 cut(s) 1137, 1210
SinI GGWCC 1 cut(s) 908
SmlI CTYRAG 2 cut(s) 729, 752
SmoI CTYRAG 2 cut(s) 729, 752
Sse9I AATT 6 cut(s) 178, 183, 291, 458, 570, 623
SspI AATATT 1 cut(s) 431
SspMI CTAG 4 cut(s) 597, 642, 702, 822
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 821
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 2 cut(s) 218, 917
TaqI TCGA 1 cut(s) 895
TasI AATT 6 cut(s) 178, 183, 291, 458, 570, 623
TatI WGTACW 2 cut(s) 8, 1206
TfiI GAWTC 5 cut(s) 356, 416, 470, 539, 1121
Tru1I TTAA 3 cut(s) 212, 405, 626
Tru9I TTAA 3 cut(s) 212, 405, 626
TscAI CASTG 3 cut(s) 565, 1002, 1018
TseFI GTSAC 2 cut(s) 560, 983
TseI GCWGC 4 cut(s) 88, 604, 607, 1136
Tsp45I GTSAC 2 cut(s) 560, 983
TspDTI ATGAA 3 cut(s) 582, 602, 648
TspRI CASTG 3 cut(s) 565, 1002, 1018
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 908
XagI CCTNNNNNAGG 1 cut(s) 1160
XapI RAATTY 2 cut(s) 178, 570
XceI RCATGY 1 cut(s) 1207
XmaJI CCTAGG 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 4 cut(s) 597, 642, 702, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.