MD06G1219600.v1.1

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016846
Physical Location & Seq
Forward (+)
35192258 .. 35196265
4008 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1219600.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGTTGGGAAGTGGGTTGCAGTTCGGGAATGTTCGTGGGGAGGACAGGTTTTACATTCCTGTGAAAGCAAGGAAGAGATACAACAATCAGCATAAGCAAGCTCGGAGAGCCAGCAAGAACGATCCCAATGAGAGCCCCAAAGAGCATCAGAATTCATCGGAAAAGCCCTCTTTCGAGCGGGTTCTGACACCGACTAGTAATCTGGAGAGGCTCTTGGAGTTCACTACTCCTTCTGTTCCTGCTCAATATTTCTCGAAGACGACAATGAGGGGGCGGAGGACTTGTGATGTTGAGTTTGAGCCTTACTTCACACTGAATGATCTATGGGAATCCTTCAGGGAGTGGAGTGCATATGGGGCAGGAGTACCATTGGTCCTTAACAATAGTGATTCTGTTATTCAATACTATGTTCCATATTTATCTGGTATCCAATTATATGGGGAATCTTCAGTGAAGTCAAATGCAAAGTCAAGGCAGGTGGGTGAGGACAATGATGTCGACAACTATTTAGATTCGAGTAGTGATGCAAGCAGTGATTATGAATTTGAGAAACACATAAAGGTTGCAAAGGAGCAGGGGATTCTTCACCATCTAAGCAGGGACATATCTACTAGAATGGGCAGTTTGTCCATACATGGTGAACACCCTGTATTACAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGAATTCTCGAGGTGTCCTGCTTTTTGAGTTTCTTGAGCAGGATGCTCCATATGGCCGTGAACCATTGGCTGACAAGATATCAGGTCTTGCACACCAGTACCCTGGTTTAAAGACATTAAGAAGCTGTGACTTACTGCCAGGAAGTTGGATGTCAGTCGCTTGGTATCCCATATATCGAATACCTACGGGTCCAACATTGAAAGATTTAGATGCTTGCTTTTTGACATATCATTCACTTTCAACACCCATGACAGGTACTGTAAATAGCCCGGCTCCAGTGATGATCTATCCCAGTGAGATGGATGGTGTCCCAAGGATTTCCTTACCTGTTTTTGGACTGGCATCCTACAAGTTAAAAGGATCCCTGTGGACACAAAGTGGAGTGACGGAGTGTCAACTGGCAAGTTCCCTGATGCAGGCCGCAGACAGTTGGCTTAGCCGGCTCCAGGTCAATCACCCCGATTTCCAGTTCTTCGCTTCGCACGGCATGCACTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

397

Amino Acids

44.44

Weight (kDa)

5.96

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 66 - 388 5.1e-109 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016846)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11720
malus_domestica MD06G1219600.v1.1
prunus_persica Prupe.5G224100_v2.0.a1
pyrus_communis pycom06g19600
rosa_chinensis RchiOBHm_Chr7g0186041
rosa_laevigata RLG00000004870
rosa_multiflora Rmu_sc0000194.1_g000021
rosa_roxburghii Rroxscaffold_3G00268480
rosa_rugosa Rorug06G0471800
rosa_samantha Rh7AG070100 Rh7BG086100 Rh7CG078200 Rh7DG078200
rosa_wichuraiana Rw7G006500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 466, 1176
AasI GACNNNNNNGTC 1 cut(s) 494
Acc36I ACCTGC 2 cut(s) 466, 1176
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 498
AciI CCGC 3 cut(s) 178, 274, 1110
AclWI GGATC 3 cut(s) 116, 1044, 1057
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 3 cut(s) 151, 542, 691
AcuI CTGAAG 2 cut(s) 319, 432
AdeI CACNNNGTG 1 cut(s) 1067
AfaI GTAC 3 cut(s) 366, 788, 946
AfiI CCNNNNNNNGG 4 cut(s) 941, 1022, 1105, 1135
AgsI TTSAA 3 cut(s) 401, 889, 930
AhdI GACNNNNNGTC 1 cut(s) 1080
AhlI ACTAGT 1 cut(s) 194
AjnI CCWGG 3 cut(s) 790, 826, 1134
AluBI AGCT 3 cut(s) 101, 686, 813
AluI AGCT 3 cut(s) 101, 686, 813
AlwI GGATC 3 cut(s) 116, 1044, 1057
AlwNI CAGNNNCTG 1 cut(s) 947
Ama87I CYCGRG 1 cut(s) 696
AoxI GGCC 2 cut(s) 742, 1107
ApoI RAATTY 3 cut(s) 151, 542, 691
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspS9I GGNCC 2 cut(s) 373, 878
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 4 cut(s) 494, 578, 650, 1136
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 2 cut(s) 373, 878
BaeI ACNNNNGTAYC 2 cut(s) 770, 803
BamHI GGATCC 1 cut(s) 1049
BanII GRGCYC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 263
BccI CCATC 4 cut(s) 597, 671, 982, 986
BceAI ACGGC 2 cut(s) 729, 1189
BciT130I CCWGG 3 cut(s) 792, 828, 1136
BciVI GTATCC 2 cut(s) 437, 864
BcnI CCSGG 1 cut(s) 959
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 3 cut(s) 195, 612, 669
BfmI CTRYAG 1 cut(s) 1183
BfuAI ACCTGC 2 cut(s) 466, 1176
BfuI GTATCC 2 cut(s) 437, 864
BisI GCNGC 1 cut(s) 1110
BlpI GCTNAGC 1 cut(s) 1124
BlsI GCNGC 1 cut(s) 1111
Bme1390I CCNGG 4 cut(s) 792, 828, 959, 1136
Bme18I GGWCC 2 cut(s) 373, 878
BmeRI GACNNNNNGTC 1 cut(s) 1080
BmeT110I CYCGRG 1 cut(s) 696
BmgT120I GGNCC 2 cut(s) 373, 878
BmiI GGNNCC 4 cut(s) 879, 963, 1051, 1133
BmrFI CCNGG 4 cut(s) 792, 828, 959, 1136
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 6 cut(s) 154, 514, 721, 889, 1040, 1092
BmuI ACTGGG 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 3 cut(s) 224, 948, 1118
Bpu1102I GCTNAGC 1 cut(s) 1124
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 1 cut(s) 959
BsaJI CCNNGG 2 cut(s) 790, 1001
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 268, 298
Bsc4I CCNNNNNNNGG 4 cut(s) 941, 1022, 1105, 1135
Bse118I RCCGGY 1 cut(s) 1128
Bse1I ACTGG 6 cut(s) 784, 965, 981, 1032, 1092, 1156
BseBI CCWGG 3 cut(s) 792, 828, 1136
BseDI CCNNGG 2 cut(s) 790, 1001
BseGI GGATG 4 cut(s) 736, 843, 997, 1031
BseLI CCNNNNNNNGG 4 cut(s) 941, 1022, 1105, 1135
BseNI ACTGG 6 cut(s) 784, 965, 981, 1032, 1092, 1156
BseYI CCCAGC 1 cut(s) 686
BshFI GGCC 2 cut(s) 744, 1109
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 2 cut(s) 959, 1129
BslFI GGGAC 2 cut(s) 614, 983
BslI CCNNNNNNNGG 4 cut(s) 941, 1022, 1105, 1135
BsmFI GGGAC 2 cut(s) 614, 983
BsnI GGCC 2 cut(s) 744, 1109
BsoBI CYCGRG 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 4 cut(s) 121, 319, 972, 1049
Bsp1720I GCTNAGC 1 cut(s) 1124
BspACI CCGC 3 cut(s) 178, 274, 1110
BspANI GGCC 2 cut(s) 744, 1109
BspLI GGNNCC 4 cut(s) 879, 963, 1051, 1133
BspMAI CTGCAG 1 cut(s) 1187
BspMI ACCTGC 2 cut(s) 466, 1176
BspPI GGATC 3 cut(s) 116, 1044, 1057
BsrBI CCGCTC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 1128
BsrI ACTGG 6 cut(s) 784, 965, 981, 1032, 1092, 1156
BssAI RCCGGY 1 cut(s) 1128
BssECI CCNNGG 2 cut(s) 790, 1001
BssMI GATC 4 cut(s) 121, 319, 972, 1049
BssT1I CCWWGG 1 cut(s) 1001
Bst2UI CCWGG 3 cut(s) 792, 828, 1136
Bst4CI ACNGT 2 cut(s) 949, 1118
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 2 cut(s) 1177, 1182
BstC8I GCNNGC 7 cut(s) 99, 112, 529, 904, 1107, 1130, 1178
BstDEI CTNAG 2 cut(s) 593, 1124
BstENI CCTNNNNNAGG 1 cut(s) 1103
BstF5I GGATG 4 cut(s) 736, 843, 997, 1031
BstKTI GATC 4 cut(s) 124, 322, 975, 1052
BstMBI GATC 4 cut(s) 121, 319, 972, 1049
BstMWI GCNNNNNNNGC 5 cut(s) 107, 356, 1129, 1177, 1182
BstNI CCWGG 3 cut(s) 792, 828, 1136
BstNSI RCATGY 1 cut(s) 1180
BstSCI CCNGG 4 cut(s) 790, 826, 957, 1134
BstSFI CTRYAG 1 cut(s) 1183
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 1049
BstXI CCANNNNNNTGG 4 cut(s) 437, 791, 834, 988
BstYI RGATCY 1 cut(s) 1049
BsuI GTATCC 2 cut(s) 437, 864
BsuRI GGCC 2 cut(s) 744, 1109
BtsCI GGATG 4 cut(s) 736, 843, 997, 1031
BtsI GCAGTG 2 cut(s) 538, 1180
BtsIMutI CAGTG 6 cut(s) 311, 456, 538, 972, 988, 1180
BveI ACCTGC 2 cut(s) 466, 1176
Cac8I GCNNGC 7 cut(s) 99, 112, 529, 904, 1107, 1130, 1178
CaiI CAGNNNCTG 1 cut(s) 947
Cfr10I RCCGGY 1 cut(s) 1128
Cfr13I GGNCC 2 cut(s) 373, 878
Csp6I GTAC 3 cut(s) 365, 787, 945
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 3 cut(s) 635, 937, 1177
CviQI GTAC 3 cut(s) 365, 787, 945
DdeI CTNAG 2 cut(s) 593, 1124
DpnI GATC 4 cut(s) 123, 321, 974, 1051
DpnII GATC 4 cut(s) 121, 319, 972, 1049
DraI TTTAAA 1 cut(s) 798
DraIII CACNNNGTG 1 cut(s) 1067
DrdI GACNNNNNNGTC 1 cut(s) 494
DriI GACNNNNNGTC 1 cut(s) 1080
DseDI GACNNNNNNGTC 1 cut(s) 494
EaeI YGGCCR 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 1080
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 1001
Eco24I GRGCYC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 768
Eco47I GGWCC 2 cut(s) 373, 878
Eco57I CTGAAG 2 cut(s) 319, 432
Eco88I CYCGRG 1 cut(s) 696
EcoNI CCTNNNNNAGG 1 cut(s) 1103
EcoRI GAATTC 2 cut(s) 151, 691
EcoRII CCWGG 3 cut(s) 790, 826, 1134
EcoRV GATATC 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 1001
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 1001
FaeI CATG 3 cut(s) 638, 940, 1180
FaqI GGGAC 2 cut(s) 614, 983
FatI CATG 3 cut(s) 634, 936, 1176
FauI CCCGC 1 cut(s) 171
FauNDI CATATG 2 cut(s) 352, 739
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 1110
FokI GGATG 4 cut(s) 743, 850, 1004, 1018
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 1110
FspBI CTAG 3 cut(s) 195, 612, 669
GluI GCNGC 1 cut(s) 1110
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 3 cut(s) 224, 948, 1118
HaeIII GGCC 2 cut(s) 744, 1109
HapII CCGG 2 cut(s) 959, 1129
Hin1II CATG 3 cut(s) 638, 940, 1180
HincII GTYRAC 2 cut(s) 499, 1085
HindII GTYRAC 2 cut(s) 499, 1085
HinfI GANTC 5 cut(s) 329, 389, 443, 512, 580
HpaII CCGG 2 cut(s) 959, 1129
HphI GGTGA 4 cut(s) 494, 578, 650, 1136
Hpy166II GTNNAC 6 cut(s) 222, 499, 641, 749, 1059, 1085
Hpy188I TCNGA 4 cut(s) 105, 150, 160, 186
Hpy188III TCNNGA 5 cut(s) 25, 203, 253, 696, 722
Hpy8I GTNNAC 6 cut(s) 222, 499, 641, 749, 1059, 1085
HpyAV CCTTC 3 cut(s) 240, 343, 653
HpyCH4III ACNGT 2 cut(s) 949, 1118
HpyCH4V TGCA 9 cut(s) 19, 350, 464, 527, 566, 779, 1105, 1180, 1185
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 356, 1129, 1177, 1182
HpyF3I CTNAG 2 cut(s) 593, 1124
Hsp92II CATG 3 cut(s) 638, 940, 1180
KroI GCCGGC 1 cut(s) 1128
KroNI GCCGGC 1 cut(s) 1130
Kzo9I GATC 4 cut(s) 121, 319, 972, 1049
LmnI GCTCC 4 cut(s) 571, 739, 967, 1137
LweI GCATC 6 cut(s) 154, 514, 721, 889, 1040, 1092
MaeI CTAG 3 cut(s) 195, 612, 669
MaeIII GTNAC 2 cut(s) 815, 1072
MalI GATC 4 cut(s) 123, 321, 974, 1051
MbiI CCGCTC 1 cut(s) 178
MboI GATC 4 cut(s) 121, 319, 972, 1049
MboII GAAGA 5 cut(s) 85, 268, 438, 575, 1153
MflI RGATCY 1 cut(s) 1049
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 4 cut(s) 151, 431, 542, 691
MmeI TCCRAC 2 cut(s) 815, 905
MnlI CCTC 7 cut(s) 34, 178, 201, 261, 270, 478, 692
MroNI GCCGGC 1 cut(s) 1128
MseI TTAA 4 cut(s) 378, 797, 806, 1043
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 2 cut(s) 959, 1129
MspR9I CCNGG 4 cut(s) 792, 828, 959, 1136
MvaI CCWGG 3 cut(s) 792, 828, 1136
MwoI GCNNNNNNNGC 5 cut(s) 107, 356, 1129, 1177, 1182
NaeI GCCGGC 1 cut(s) 1130
NciI CCSGG 1 cut(s) 959
NdeI CATATG 2 cut(s) 352, 739
NdeII GATC 4 cut(s) 121, 319, 972, 1049
NgoMIV GCCGGC 1 cut(s) 1128
NlaIII CATG 3 cut(s) 638, 940, 1180
NlaIV GGNNCC 4 cut(s) 879, 963, 1051, 1133
NmuCI GTSAC 2 cut(s) 815, 1072
NspI RCATGY 1 cut(s) 1180
PaeI GCATGC 1 cut(s) 1180
PaeR7I CTCGAG 1 cut(s) 696
PaqCI CACCTGC 2 cut(s) 466, 1176
PdiI GCCGGC 1 cut(s) 1130
PfeI GAWTC 5 cut(s) 329, 389, 443, 512, 580
PkrI GCNGC 1 cut(s) 1111
Psp6I CCWGG 3 cut(s) 790, 826, 1134
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 3 cut(s) 790, 826, 1134
PspN4I GGNNCC 4 cut(s) 879, 963, 1051, 1133
PspPI GGNCC 2 cut(s) 373, 878
PstI CTGCAG 1 cut(s) 1187
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 1 cut(s) 1049
RsaI GTAC 3 cut(s) 366, 788, 946
RsaNI GTAC 3 cut(s) 365, 787, 945
RseI CAYNNNNRTG 1 cut(s) 59
SalI GTCGAC 1 cut(s) 497
SaqAI TTAA 4 cut(s) 378, 797, 806, 1043
SatI GCNGC 1 cut(s) 1110
Sau3AI GATC 4 cut(s) 121, 319, 972, 1049
Sau96I GGNCC 2 cut(s) 373, 878
ScrFI CCNGG 4 cut(s) 792, 828, 959, 1136
SduI GDGCHC 1 cut(s) 137
SfaNI GCATC 6 cut(s) 154, 514, 721, 889, 1040, 1092
SfcI CTRYAG 1 cut(s) 1183
Sfr274I CTCGAG 1 cut(s) 696
SinI GGWCC 2 cut(s) 373, 878
SlaI CTCGAG 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 696, 722
SmoI CTYRAG 2 cut(s) 696, 722
SpeI ACTAGT 1 cut(s) 194
SphI GCATGC 1 cut(s) 1180
Sse9I AATT 4 cut(s) 151, 431, 542, 691
SsiI CCGC 3 cut(s) 178, 274, 1110
SspI AATATT 1 cut(s) 248
SspMI CTAG 3 cut(s) 195, 612, 669
StyD4I CCNGG 4 cut(s) 790, 826, 957, 1134
StyI CCWWGG 1 cut(s) 1001
TaaI ACNGT 2 cut(s) 949, 1118
TaqI TCGA 6 cut(s) 174, 254, 498, 515, 697, 865
TasI AATT 4 cut(s) 151, 431, 542, 691
TauI GCSGC 1 cut(s) 1112
TfiI GAWTC 5 cut(s) 329, 389, 443, 512, 580
Tru1I TTAA 4 cut(s) 378, 797, 806, 1043
Tru9I TTAA 4 cut(s) 378, 797, 806, 1043
TscAI CASTG 6 cut(s) 318, 456, 538, 972, 988, 1187
TseFI GTSAC 2 cut(s) 815, 1072
Tsp45I GTSAC 2 cut(s) 815, 1072
TspDTI ATGAA 2 cut(s) 144, 555
TspGWI ACGGA 1 cut(s) 1091
TspRI CASTG 6 cut(s) 318, 456, 538, 972, 988, 1187
VpaK11BI GGWCC 2 cut(s) 373, 878
XagI CCTNNNNNAGG 1 cut(s) 1103
XapI RAATTY 3 cut(s) 151, 542, 691
XceI RCATGY 1 cut(s) 1180
XhoI CTCGAG 1 cut(s) 696
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 3 cut(s) 195, 612, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.