Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011562

Physical Location & Seq

Genomic Coordinates Forward (+)

6838033 .. 6839547

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAACAGATTCGCTTCGTACGAGCAGAACGCCATGGCAGGCTTTGAGGGGATGAAGATGGTGGATTCAGTTGTGTGCCCAAAACCACGTCGTTTAAGCGCTTTAAATCCGTCGCTTAACGACCCTATCAGACCTCCTTATAGATGCTTCAATCAATACCAATCAGAGGCTGGAGATTCTCAGGCAGCGTCTGAACTTCTCGACCTGATTCTCAATAAGGGGGAAAGTGGAGGTGAGAGATCCATGAAGCAGTTGGCTTCATCGCCACCGTTCTTTTGTGGGTCTCCGCCGAGCCGGGCGTCGAACCCGGTCATCCAAGATGAGCAGTTTGGGAGCTGCAAGGTGGGACCTTTTTCGCCGACGGCGGGGCGCAACGGAGGCTGTGTCCGGATGAAATCCGGGGACAAGTCGGTTGCGGTGCGCATCGAAGGGTTTGATTGTCTTAGCAGGGACCGCAGGAACTGCAGCATCCCTTCTGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.42

Weight (kDa)

8.74

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12120
malus_domestica	MD06G1216300.v1.1 MD14G1226700.v1.1
prunus_persica	Prupe.1G559100_v2.0.a1 Prupe.3G161400_v2.0.a1 Prupe.5G221400_v2.0.a1 Prupe.5G221400_v2.0.a1 Prupe.5G221400_v2.0.a1
pyrus_communis	pycom06g19270 pycom14g18810
rosa_chinensis	RchiOBHm_Chr7g0185461
rosa_laevigata	RLG00000004911
rosa_multiflora	Rmu_sc0010190.1_g000027
rosa_roxburghii	Rroxscaffold_3G00268920
rosa_rugosa	Rorug06G0469600
rosa_samantha	Rh7AG073400 Rh7BG074200 Rh7CG074400 Rh7DG074300
rosa_wichuraiana	Rw7G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	422
AccIII	TCCGGA	1 cut(s)	387
AciI	CCGC	4 cut(s)	287, 365, 416, 454
AclWI	GGATC	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	20
AfeI	AGCGCT	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	166, 365
AgsI	TTSAA	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	89
AluBI	AGCT	2 cut(s)	336, 482
AluI	AGCT	2 cut(s)	336, 482
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	234
AlwNI	CAGNNNCTG	3 cut(s)	170, 191, 462
Aor13HI	TCCGGA	1 cut(s)	387
Aor51HI	AGCGCT	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	185, 336, 465
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	101, 372, 423
AspS9I	GGNCC	2 cut(s)	347, 451
AsuC2I	CCSGG	3 cut(s)	296, 308, 400
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	347, 451
BaeGI	GKGCMC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	197, 323, 477
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	378
BcnI	CCSGG	3 cut(s)	296, 308, 400
BcoDI	GTCTC	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	463, 477
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	3 cut(s)	186, 337, 466
BlsI	GCNGC	3 cut(s)	187, 338, 467
Bme1390I	CCNGG	3 cut(s)	296, 308, 400
Bme18I	GGWCC	2 cut(s)	347, 451
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	347, 451
BmiI	GGNNCC	2 cut(s)	348, 452
BmrFI	CCNGG	3 cut(s)	296, 308, 400
BmsI	GCATC	3 cut(s)	134, 432, 477
BpmI	CTGGAG	1 cut(s)	192
BpuMI	CCSGG	3 cut(s)	296, 308, 400
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	33, 399
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 365
BseAI	TCCGGA	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	33, 399
BseGI	GGATG	4 cut(s)	57, 312, 396, 468
BseLI	CCNNNNNNNGG	2 cut(s)	166, 365
BseMII	CTCAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	197, 323, 477
BsiSI	CCGG	4 cut(s)	295, 308, 388, 399
BsiWI	CGTACG	1 cut(s)	18
BslFI	GGGAC	3 cut(s)	360, 416, 464
BslI	CCNNNNNNNGG	2 cut(s)	166, 365
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	3 cut(s)	360, 416, 464
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	239
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	4 cut(s)	287, 365, 416, 454
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	348, 452
BspMAI	CTGCAG	1 cut(s)	467
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	33, 399
BssMI	GATC	1 cut(s)	239
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	180, 443
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	4 cut(s)	57, 312, 396, 468
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	3 cut(s)	101, 372, 423
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	3 cut(s)	378, 453, 462
BstSCI	CCNGG	3 cut(s)	294, 306, 398
BstSFI	CTRYAG	2 cut(s)	463, 477
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	197, 323, 477
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	89
BtsCI	GGATG	4 cut(s)	57, 312, 396, 468
Cac8I	GCNNGC	1 cut(s)	40
CaiI	CAGNNNCTG	3 cut(s)	170, 191, 462
CfoI	GCGC	3 cut(s)	101, 372, 423
Cfr13I	GGNCC	2 cut(s)	347, 451
CseI	GACGC	2 cut(s)	177, 288
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	34, 244
CviJI	RGCY	7 cut(s)	42, 170, 257, 294, 336, 381, 482
CviKI_1	RGCY	7 cut(s)	42, 170, 257, 294, 336, 381, 482
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	180, 443
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
DraI	TTTAAA	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	347, 451
Eco47III	AGCGCT	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 247
FaiI	YATR	3 cut(s)	35, 141, 245
FaqI	GGGAC	3 cut(s)	360, 416, 464
FatI	CATG	2 cut(s)	33, 243
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	186, 337, 466
FokI	GGATG	4 cut(s)	64, 299, 403, 455
Fsp4HI	GCNGC	3 cut(s)	186, 337, 466
FspAI	RTGCGCAY	1 cut(s)	422
FspI	TGCGCA	1 cut(s)	422
GlaI	GCGC	3 cut(s)	100, 371, 422
GluI	GCNGC	3 cut(s)	186, 337, 466
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	102
HapII	CCGG	4 cut(s)	295, 308, 388, 399
HgaI	GACGC	2 cut(s)	177, 288
HhaI	GCGC	3 cut(s)	101, 372, 423
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	37, 247
Hin6I	GCGC	3 cut(s)	99, 370, 421
HinP1I	GCGC	3 cut(s)	99, 370, 421
HinfI	GANTC	4 cut(s)	9, 65, 176, 208
HpaII	CCGG	4 cut(s)	295, 308, 388, 399
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	131, 166, 193
Hpy188III	TCNNGA	2 cut(s)	200, 388
Hpy99I	CGWCG	4 cut(s)	93, 115, 304, 364
HpyAV	CCTTC	2 cut(s)	422, 483
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	339, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	378, 453, 462
HpyF3I	CTNAG	2 cut(s)	180, 443
HpySE526I	ACGT	1 cut(s)	88
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	37, 247
HspAI	GCGC	3 cut(s)	99, 370, 421
Kpn2I	TCCGGA	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	3 cut(s)	197, 323, 477
LweI	GCATC	3 cut(s)	134, 432, 477
MaeII	ACGT	1 cut(s)	88
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	40, 144, 160, 224, 371
MroI	TCCGGA	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	95, 104, 117, 484
MspI	CCGG	4 cut(s)	295, 308, 388, 399
MspR9I	CCNGG	3 cut(s)	296, 308, 400
MwoI	GCNNNNNNNGC	3 cut(s)	378, 453, 462
NciI	CCSGG	3 cut(s)	296, 308, 400
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	37, 247
NlaIV	GGNNCC	2 cut(s)	348, 452
NmeAIII	GCCGAG	1 cut(s)	315
NsbI	TGCGCA	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	4 cut(s)	9, 65, 176, 208
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	187, 338, 467
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
PspLI	CGTACG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	348, 452
PspPI	GGNCC	2 cut(s)	347, 451
PspPPI	RGGWCCY	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	467
PstNI	CAGNNNCTG	3 cut(s)	170, 191, 462
PsuI	RGATCY	1 cut(s)	239
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	4 cut(s)	95, 104, 117, 484
SatI	GCNGC	3 cut(s)	186, 337, 466
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	2 cut(s)	347, 451
ScrFI	CCNGG	3 cut(s)	296, 308, 400
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	8 cut(s)	91, 136, 207, 235, 338, 345, 352, 484
SfaNI	GCATC	3 cut(s)	134, 432, 477
SfcI	CTRYAG	2 cut(s)	463, 477
SinI	GGWCC	2 cut(s)	347, 451
SsiI	CCGC	4 cut(s)	287, 365, 416, 454
StyD4I	CCNGG	3 cut(s)	294, 306, 398
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	201, 302, 426
TfiI	GAWTC	4 cut(s)	9, 65, 176, 208
Tru1I	TTAA	4 cut(s)	95, 104, 117, 484
Tru9I	TTAA	4 cut(s)	95, 104, 117, 484
TseI	GCWGC	3 cut(s)	185, 336, 465
TspDTI	ATGAA	5 cut(s)	17, 68, 249, 260, 407
TspGWI	ACGGA	2 cut(s)	99, 390
VpaK11BI	GGWCC	2 cut(s)	347, 451
XcmI	CCANNNNNNNNNTGG	2 cut(s)	167, 250
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.