Prupe.5G221400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011562
Physical Location & Seq
Reverse (-)
17232191 .. 17234514
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G221400.2

Sequence Viewer

Length: 492 bp
ATGAACAGGTGCGCTTACGAGCAGAACGCCATGGCAGGTTGTGAGGGGATGAAGATGGTGGATTCAGTTGTGTGCCCAAAGCCACGTCGTTTGAACATCATAAATCCTTCCCTTAACGACTCCATCAAACCCTTCAGATATTTCAACCAATCGGAAATCGGAGATCCTCAAGCAGGGTCTGATGAACTTCTGGATTTTCTTCTCACCAAGGGAAATTGTGAAGAGAGATCCAGTAACCAACTGGCTTCATCGCCACCATTTTTCTGTGGGTCTCCACCAAGCAGGGCATCAAACCCTGTAATCCAAGATGAGCAATTTGGCAACAGCAGCAAGATGGCTTCATTTTTTCCAGCACCGCCGTCTTCATTGTCTGCGCGCAACGGAGGGTGTGTTCGGATGAAATCAGGGGACAAGCCTGTTGCTGTGCGCATTGAAGGGTTTGATTGTCTTAGCAGGGACCGCAGAAACTGCAGCATCTCTGCTGTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.72

Weight (kDa)

8.13

Isoelectric Point (pI)

67.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 26
AccII CGCG 1 cut(s) 376
AciI CCGC 2 cut(s) 356, 460
AclWI GGATC 2 cut(s) 158, 222
AcuI CTGAAG 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 3 cut(s) 94, 145, 434
AjiI CACGTC 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
AluBI AGCT 1 cut(s) 488
AluI AGCT 1 cut(s) 488
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 2 cut(s) 158, 222
AlwNI CAGNNNCTG 2 cut(s) 179, 468
ApeKI GCWGC 2 cut(s) 327, 471
AspLEI GCGC 4 cut(s) 14, 376, 378, 429
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 339, 483
BccI CCATC 3 cut(s) 49, 131, 328
BceAI ACGGC 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 276
BfmI CTRYAG 2 cut(s) 469, 483
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 2 cut(s) 328, 472
BlsI GCNGC 2 cut(s) 329, 473
Bme18I GGWCC 1 cut(s) 457
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 458
BmsI GCATC 2 cut(s) 296, 483
BpiI GAAGAC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 30, 207
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 231, 246
BseDI CCNNGG 2 cut(s) 30, 207
BseGI GGATG 2 cut(s) 54, 402
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 231, 246
BsePI GCGCGC 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 339, 483
Bsh1236I CGCG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 422, 470
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 2 cut(s) 422, 470
Bso31I GGTCTC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 163, 227
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 2 cut(s) 356, 460
BspFNI CGCG 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 458
BspMAI CTGCAG 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 2 cut(s) 158, 222
BspTNI GGTCTC 1 cut(s) 276
BsrI ACTGG 2 cut(s) 231, 246
BssECI CCNNGG 2 cut(s) 30, 207
BssHII GCGCGC 1 cut(s) 374
BssMI GATC 2 cut(s) 163, 227
BssT1I CCWWGG 2 cut(s) 30, 207
Bst6I CTCTTC 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 449, 489
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 54, 402
BstFNI CGCG 1 cut(s) 376
BstHHI GCGC 4 cut(s) 14, 376, 378, 429
BstKTI GATC 2 cut(s) 166, 230
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 2 cut(s) 163, 227
BstMWI GCNNNNNNNGC 3 cut(s) 327, 459, 468
BstSFI CTRYAG 2 cut(s) 469, 483
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 339, 483
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 2 cut(s) 163, 227
BstYI RGATCY 2 cut(s) 163, 227
BtgI CCRYGG 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 86
BtsCI GGATG 2 cut(s) 54, 402
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 376
CaiI CAGNNNCTG 2 cut(s) 179, 468
CfoI GCGC 4 cut(s) 14, 376, 378, 429
Cfr13I GGNCC 1 cut(s) 457
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 1 cut(s) 31
CviJI RGCY 5 cut(s) 82, 245, 338, 415, 488
CviKI_1 RGCY 5 cut(s) 82, 245, 338, 415, 488
DdeI CTNAG 2 cut(s) 449, 489
DpnI GATC 2 cut(s) 165, 229
DpnII GATC 2 cut(s) 163, 227
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 30, 207
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 30, 207
ErhI CCWWGG 2 cut(s) 30, 207
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 101
FaqI GGGAC 2 cut(s) 422, 470
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 328, 472
FokI GGATG 2 cut(s) 61, 409
Fsp4HI GCNGC 2 cut(s) 328, 472
FspAI RTGCGCAY 1 cut(s) 428
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 4 cut(s) 13, 375, 377, 428
GluI GCNGC 2 cut(s) 328, 472
HhaI GCGC 4 cut(s) 14, 376, 378, 429
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 4 cut(s) 12, 374, 376, 427
HinP1I GCGC 4 cut(s) 12, 374, 376, 427
HinfI GANTC 2 cut(s) 62, 119
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 5 cut(s) 137, 154, 161, 181, 396
Hpy188III TCNNGA 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 3 cut(s) 117, 142, 428
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 327, 459, 468
HpyF3I CTNAG 2 cut(s) 449, 489
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 4 cut(s) 12, 374, 376, 427
Kzo9I GATC 2 cut(s) 163, 227
Lsp1109I GCAGC 2 cut(s) 339, 483
LweI GCATC 2 cut(s) 296, 483
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 165, 229
MboI GATC 2 cut(s) 163, 227
MboII GAAGA 4 cut(s) 64, 191, 233, 354
MflI RGATCY 2 cut(s) 163, 227
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 214, 314
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 37, 177, 377
MseI TTAA 1 cut(s) 114
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 3 cut(s) 327, 459, 468
NcoI CCATGG 1 cut(s) 30
NdeII GATC 2 cut(s) 163, 227
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 458
NsbI TGCGCA 1 cut(s) 428
PauI GCGCGC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 329, 473
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 458
PspPI GGNCC 1 cut(s) 457
PstI CTGCAG 1 cut(s) 473
PstNI CAGNNNCTG 2 cut(s) 179, 468
PsuI RGATCY 2 cut(s) 163, 227
PteI GCGCGC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 328, 472
Sau3AI GATC 2 cut(s) 163, 227
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 77
SetI ASST 4 cut(s) 11, 40, 88, 490
SfaNI GCATC 2 cut(s) 296, 483
SfcI CTRYAG 2 cut(s) 469, 483
SinI GGWCC 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 2 cut(s) 214, 314
SsiI CCGC 2 cut(s) 356, 460
StyI CCWWGG 2 cut(s) 30, 207
TaiI ACGT 1 cut(s) 88
TasI AATT 2 cut(s) 214, 314
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 2 cut(s) 327, 471
TspDTI ATGAA 7 cut(s) 17, 65, 198, 237, 330, 354, 413
TspGWI ACGGA 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 457
XagI CCTNNNNNAGG 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.