Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011562

Physical Location & Seq

Genomic Coordinates Forward (+)

63622230 .. 63622976

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAACAGATTCGGTTCTTACGAGCAGAACGCCATGACAGGCTTTGAGGGGATGAAGATGGTGGATTCAGTTGTGTGCCCAAAGCCGCGTCGTTTAAGCGCCTTAAATCCGTCGCTTAACGACTCCATGAGACCTCCTTGTAGATTCTTCAATCACTACCAATCAGAGATTGAAGATTCTCAAGCAGCGTCTGAGCTTCTGGACCTGATTCTCAATAAGGGGGATAGGGATAGTGGAGGTGAGAGATCCATGAAGCAATTGGCTTCGTCGCCACCGTTCTTTTGCGGGTCTCCACCGAGCCGGGCATCCAACCCGGTCGTCCAAGATGAGCAGTTTGGGAGCAGCAAGGTGGGGGGTCCTTTTTCGCCGACGGCGGGGCGCAACGGAGGCTGTGTCCGGATGAAATCCGGGGACAAGCCGGTTGCGGTGCGCATCGAAGGGTTTGATTGTCTTAGCAGGGACCGCAGGAACTGCAGCATCCCTTCTGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.84

Weight (kDa)

8.59

Isoelectric Point (pI)

72.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12120
malus_domestica	MD06G1216300.v1.1 MD14G1226700.v1.1
prunus_persica	Prupe.1G559100_v2.0.a1 Prupe.3G161400_v2.0.a1 Prupe.5G221400_v2.0.a1 Prupe.5G221400_v2.0.a1 Prupe.5G221400_v2.0.a1
pyrus_communis	pycom06g19270 pycom14g18810
rosa_chinensis	RchiOBHm_Chr7g0185461
rosa_laevigata	RLG00000004911
rosa_multiflora	Rmu_sc0010190.1_g000027
rosa_roxburghii	Rroxscaffold_3G00268920
rosa_rugosa	Rorug06G0469600
rosa_samantha	Rh7AG073400 Rh7BG074200 Rh7CG074400 Rh7DG074300
rosa_wichuraiana	Rw7G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	431
AccII	CGCG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	396
AciI	CCGC	5 cut(s)	86, 285, 374, 425, 463
AclWI	GGATC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	151, 173
AluBI	AGCT	2 cut(s)	196, 491
AluI	AGCT	2 cut(s)	196, 491
Alw26I	GTCTC	2 cut(s)	124, 294
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	2 cut(s)	191, 471
Aor13HI	TCCGGA	1 cut(s)	396
ApeKI	GCWGC	3 cut(s)	185, 342, 474
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	101, 381, 432
AspS9I	GGNCC	3 cut(s)	202, 356, 460
AsuC2I	CCSGG	3 cut(s)	302, 314, 409
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	3 cut(s)	202, 356, 460
BaeGI	GKGCMC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	197, 354, 486
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	387
BcnI	CCSGG	3 cut(s)	302, 314, 409
BcoDI	GTCTC	2 cut(s)	124, 294
BfmI	CTRYAG	2 cut(s)	472, 486
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	4 cut(s)	86, 186, 343, 475
BlsI	GCNGC	4 cut(s)	87, 187, 344, 476
Bme1390I	CCNGG	3 cut(s)	302, 314, 409
Bme18I	GGWCC	3 cut(s)	202, 356, 460
BmgT120I	GGNCC	3 cut(s)	202, 356, 460
BmiI	GGNNCC	2 cut(s)	357, 461
BmrFI	CCNGG	3 cut(s)	302, 314, 409
BmsI	GCATC	3 cut(s)	314, 441, 486
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	3 cut(s)	302, 314, 409
BsaI	GGTCTC	2 cut(s)	124, 294
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	4 cut(s)	57, 305, 405, 477
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	197, 354, 486
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	318
BsiSI	CCGG	5 cut(s)	301, 314, 397, 408, 419
BslFI	GGGAC	2 cut(s)	425, 473
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	2 cut(s)	124, 294
BsmFI	GGGAC	2 cut(s)	425, 473
Bso31I	GGTCTC	2 cut(s)	124, 294
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	5 cut(s)	86, 285, 374, 425, 463
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	357, 461
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	240
BspTNI	GGTCTC	2 cut(s)	124, 294
BsrFI	RCCGGY	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	471
BstDEI	CTNAG	2 cut(s)	192, 452
BstF5I	GGATG	4 cut(s)	57, 305, 405, 477
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	3 cut(s)	101, 381, 432
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	2 cut(s)	124, 294
BstMBI	GATC	1 cut(s)	245
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 462, 471
BstSCI	CCNGG	3 cut(s)	300, 312, 407
BstSFI	CTRYAG	2 cut(s)	472, 486
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	197, 354, 486
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BtsCI	GGATG	4 cut(s)	57, 305, 405, 477
CaiI	CAGNNNCTG	2 cut(s)	191, 471
CfoI	GCGC	3 cut(s)	101, 381, 432
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	202, 356, 460
CseI	GACGC	2 cut(s)	77, 177
CviAII	CATG	3 cut(s)	34, 127, 250
CviJI	RGCY	8 cut(s)	42, 85, 196, 263, 300, 390, 418, 491
CviKI_1	RGCY	8 cut(s)	42, 85, 196, 263, 300, 390, 418, 491
DdeI	CTNAG	2 cut(s)	192, 452
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
Eco31I	GGTCTC	2 cut(s)	124, 294
Eco47I	GGWCC	3 cut(s)	202, 356, 460
EcoO109I	RGGNCCY	1 cut(s)	356
FaeI	CATG	3 cut(s)	37, 130, 253
FaiI	YATR	3 cut(s)	35, 128, 251
FaqI	GGGAC	2 cut(s)	425, 473
FatI	CATG	3 cut(s)	33, 126, 249
FauI	CCCGC	2 cut(s)	278, 367
Fnu4HI	GCNGC	4 cut(s)	86, 186, 343, 475
FokI	GGATG	4 cut(s)	64, 292, 412, 464
Fsp4HI	GCNGC	4 cut(s)	86, 186, 343, 475
FspAI	RTGCGCAY	1 cut(s)	431
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	3 cut(s)	100, 380, 431
GluI	GCNGC	4 cut(s)	86, 186, 343, 475
HaeII	RGCGCY	1 cut(s)	102
HapII	CCGG	5 cut(s)	301, 314, 397, 408, 419
HgaI	GACGC	2 cut(s)	77, 177
HhaI	GCGC	3 cut(s)	101, 381, 432
Hin1II	CATG	3 cut(s)	37, 130, 253
Hin6I	GCGC	3 cut(s)	99, 379, 430
HinP1I	GCGC	3 cut(s)	99, 379, 430
HinfI	GANTC	6 cut(s)	9, 65, 122, 144, 176, 208
HpaII	CCGG	5 cut(s)	301, 314, 397, 408, 419
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	166, 193
Hpy188III	TCNNGA	2 cut(s)	200, 397
Hpy99I	CGWCG	4 cut(s)	93, 115, 271, 373
HpyAV	CCTTC	2 cut(s)	431, 492
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 462, 471
HpyF3I	CTNAG	2 cut(s)	192, 452
Hsp92II	CATG	3 cut(s)	37, 130, 253
HspAI	GCGC	3 cut(s)	99, 379, 430
Kpn2I	TCCGGA	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	339
Lsp1109I	GCAGC	3 cut(s)	197, 354, 486
LweI	GCATC	3 cut(s)	314, 441, 486
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	3 cut(s)	67, 139, 185
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	4 cut(s)	40, 144, 230, 380
MroI	TCCGGA	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	95, 104, 117, 493
MspI	CCGG	5 cut(s)	301, 314, 397, 408, 419
MspR9I	CCNGG	3 cut(s)	302, 314, 409
MunI	CAATTG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	387, 462, 471
NciI	CCSGG	3 cut(s)	302, 314, 409
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	37, 130, 253
NlaIV	GGNNCC	2 cut(s)	357, 461
NsbI	TGCGCA	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 272
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	9, 65, 144, 176, 208
PkrI	GCNGC	4 cut(s)	87, 187, 344, 476
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	357, 461
PspPI	GGNCC	3 cut(s)	202, 356, 460
PspPPI	RGGWCCY	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	476
PstNI	CAGNNNCTG	2 cut(s)	191, 471
PsuI	RGATCY	1 cut(s)	245
SaqAI	TTAA	4 cut(s)	95, 104, 117, 493
SatI	GCNGC	4 cut(s)	86, 186, 343, 475
Sau3AI	GATC	1 cut(s)	245
Sau96I	GGNCC	3 cut(s)	202, 356, 460
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	302, 314, 409
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	6 cut(s)	136, 198, 207, 241, 351, 493
SfaNI	GCATC	3 cut(s)	314, 441, 486
SfcI	CTRYAG	2 cut(s)	472, 486
SinI	GGWCC	3 cut(s)	202, 356, 460
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	5 cut(s)	86, 285, 374, 425, 463
StyD4I	CCNGG	3 cut(s)	300, 312, 407
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	435
TasI	AATT	1 cut(s)	257
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	5 cut(s)	9, 65, 144, 176, 208
Tru1I	TTAA	4 cut(s)	95, 104, 117, 493
Tru9I	TTAA	4 cut(s)	95, 104, 117, 493
TseI	GCWGC	3 cut(s)	185, 342, 474
TspDTI	ATGAA	4 cut(s)	17, 68, 266, 416
TspGWI	ACGGA	2 cut(s)	99, 399
VpaK11BI	GGWCC	3 cut(s)	202, 356, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.