Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011562

Physical Location & Seq

Genomic Coordinates Reverse (-)

34846718 .. 34848951

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1216300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATGAGCAGGTGCGGTTACGAGCAGAGCGCCACGGCAGGCTGCGAGGGGATGGATTCAGTTGTGTGCCCAAAACCACGTCGTTTCAGCCTTCTGAATCCTTCCTTCAACGACAACATCAGACCCTTCAGATACTTCAATCACAACCAATCGGAGATTCGAGATTCTGAAGCTGGGTCTGAGATTCTGGATATTATTCTCGCCAAGGGGAATTGTGAAGATAGATTCGGTAATAAGCAATCGGCTTCATCGCCTCCTTTTTTCTGCGGGTCGCCGCCGAGCAGGGCATCCAACCCTGTAATCCAAGATGAGCATTTCGGTAATAGCGGCAATATGGCTCCATTTTTGCCGGCACAGCCTATGTTGTCATCGCGCAACGGTGGCTGTGTCCGGATGAAGTCTGGGGACAGGCCAGTTGCAGTGCGGCCCTCTCTGTTTTGGAAGAAGCAGAGTTTTGTGAGAAAAGTAGAGGGCTTTGTGCTTTGGGAAAAATATCAAGAGGAGGAGGAAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.32

Weight (kDa)

6.17

Isoelectric Point (pI)

81.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12120
malus_domestica	MD06G1216300.v1.1 MD14G1226700.v1.1
prunus_persica	Prupe.1G559100_v2.0.a1 Prupe.3G161400_v2.0.a1 Prupe.5G221400_v2.0.a1 Prupe.5G221400_v2.0.a1 Prupe.5G221400_v2.0.a1
pyrus_communis	pycom06g19270 pycom14g18810
rosa_chinensis	RchiOBHm_Chr7g0185461
rosa_laevigata	RLG00000004911
rosa_multiflora	Rmu_sc0010190.1_g000027
rosa_roxburghii	Rroxscaffold_3G00268920
rosa_rugosa	Rorug06G0469600
rosa_samantha	Rh7AG073400 Rh7BG074200 Rh7CG074400 Rh7DG074300
rosa_wichuraiana	Rw7G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	373
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	5 cut(s)	15, 267, 275, 327, 424
AcuI	CTGAAG	2 cut(s)	112, 189
AgsI	TTSAA	2 cut(s)	109, 139
AjiI	CACGTC	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	2 cut(s)	410, 425
ApeKI	GCWGC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	32, 375
AspS9I	GGNCC	1 cut(s)	426
BaeGI	GKGCMC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	4 cut(s)	43, 275, 328, 425
BlsI	GCNGC	4 cut(s)	44, 276, 329, 426
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	339
BmsI	GCATC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	33, 204
BsaWI	WCCGGW	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	413
BseAI	TCCGGA	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	33, 204
BseGI	GGATG	3 cut(s)	57, 287, 399
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	515, 518
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	373
BshFI	GGCC	2 cut(s)	412, 427
BsiSI	CCGG	2 cut(s)	350, 391
BslFI	GGGAC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	412, 427
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	390
BspACI	CCGC	5 cut(s)	15, 267, 275, 327, 424
BspANI	GGCC	2 cut(s)	412, 427
BspCNI	CTCAG	1 cut(s)	172
BspEI	TCCGGA	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	33, 204
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	40, 351
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	57, 287, 399
BstFNI	CGCG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	32, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 381
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	412, 427
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	2 cut(s)	234, 354
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	57, 287, 399
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	40, 351
CfoI	GCGC	2 cut(s)	32, 375
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	112, 189
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaiI	YATR	2 cut(s)	335, 362
FaqI	GGGAC	1 cut(s)	419
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	4 cut(s)	43, 275, 328, 425
FokI	GGATG	3 cut(s)	64, 274, 406
Fsp4HI	GCNGC	4 cut(s)	43, 275, 328, 425
GlaI	GCGC	2 cut(s)	31, 374
GluI	GCNGC	4 cut(s)	43, 275, 328, 425
GsaI	CCCAGC	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	412, 427
HapII	CCGG	2 cut(s)	350, 391
HhaI	GCGC	2 cut(s)	32, 375
Hin6I	GCGC	2 cut(s)	30, 373
HinP1I	GCGC	2 cut(s)	30, 373
HinfI	GANTC	6 cut(s)	56, 97, 157, 164, 184, 225
HpaII	CCGG	2 cut(s)	350, 391
Hpy188I	TCNGA	6 cut(s)	96, 122, 131, 154, 169, 181
Hpy188III	TCNNGA	4 cut(s)	161, 188, 391, 497
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	4 cut(s)	101, 111, 115, 136
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 381
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	79
HspAI	GCGC	2 cut(s)	30, 373
Kpn2I	TCCGGA	1 cut(s)	390
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	296
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	230, 454
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	40, 264, 439, 463, 493, 496, 499
MroI	TCCGGA	1 cut(s)	390
MroNI	GCCGGC	1 cut(s)	349
MseI	TTAA	1 cut(s)	517
MspI	CCGG	2 cut(s)	350, 391
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	355, 381
NaeI	GCCGGC	1 cut(s)	351
NgoMIV	GCCGGC	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	351
PfeI	GAWTC	6 cut(s)	56, 97, 157, 164, 184, 225
PkrI	GCNGC	4 cut(s)	44, 276, 329, 426
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	517
SatI	GCNGC	4 cut(s)	43, 275, 328, 425
Sau96I	GGNCC	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	3 cut(s)	14, 82, 175
SfaNI	GCATC	1 cut(s)	296
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	5 cut(s)	15, 267, 275, 327, 424
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	211
TauI	GCSGC	3 cut(s)	277, 330, 427
TfiI	GAWTC	6 cut(s)	56, 97, 157, 164, 184, 225
Tru1I	TTAA	1 cut(s)	517
Tru9I	TTAA	1 cut(s)	517
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	237, 410
TspRI	CASTG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.