Prupe.1G559100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
45650251 .. 45650997
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G559100.1

Sequence Viewer

Length: 294 bp
ATGAAGAAGAGGAAAAAACAGACGTATGATGTGTTCAGTTTAAATTCCTTGGGTTGTTTGGTACGGCGGATTATTATGGACGGAACTAAATTCTGGGACTGTCTTGGATTAATTCGGATTGGCTTAAGTTGGATTAAATCCAGTAACCAACTGGCTTCATCGCCACCATTTTTTTGTGGGTCTCCACCAAGTAGGGCATCATACCCTGTAATTCAAGATGAGCAATTTGGCAACAGTAGCAAGATGGCTCCATTTTTTCCAGCACCGCCTTCTTCATTGTCTGAGCGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.86

Weight (kDa)

9.78

Isoelectric Point (pI)

79.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 67, 266
AcsI RAATTY 2 cut(s) 43, 89
AfaI GTAC 1 cut(s) 63
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 186
ApoI RAATTY 2 cut(s) 43, 89
AseI ATTAAT 1 cut(s) 110
AspLEI GCGC 1 cut(s) 288
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 48
Bse1I ACTGG 2 cut(s) 141, 156
BseDI CCNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 141, 156
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 186
BspACI CCGC 2 cut(s) 67, 266
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 249
BspTI CTTAAG 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 186
BsrI ACTGG 2 cut(s) 141, 156
BssECI CCNNGG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 101, 236
Bst6I CTCTTC 1 cut(s) 2
BstAFI CTTAAG 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 288
BstMAI GTCTC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 144
CfoI GCGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 62
CviJI RGCY 3 cut(s) 123, 155, 248
CviKI_1 RGCY 3 cut(s) 123, 155, 248
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 282
DraI TTTAAA 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
EciI GGCGGA 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaiI YATR 3 cut(s) 27, 77, 202
FaqI GGGAC 1 cut(s) 110
GlaI GCGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 288
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 117, 283
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 2 cut(s) 101, 236
HpyCH4IV ACGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 23
HspAI GCGC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 5 cut(s) 79, 137, 154, 219, 273
LweI GCATC 1 cut(s) 206
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 3 cut(s) 16, 19, 264
MluCI AATT 5 cut(s) 43, 89, 111, 210, 224
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 1 cut(s) 3
MseI TTAA 4 cut(s) 41, 110, 125, 135
MspCI CTTAAG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 249
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 41, 110, 125, 135
SetI ASST 1 cut(s) 26
SfaNI GCATC 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 5 cut(s) 43, 89, 111, 210, 224
SsiI CCGC 2 cut(s) 67, 266
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 101, 236
TaiI ACGT 1 cut(s) 26
TasI AATT 5 cut(s) 43, 89, 111, 210, 224
Tru1I TTAA 4 cut(s) 41, 110, 125, 135
Tru9I TTAA 4 cut(s) 41, 110, 125, 135
TspDTI ATGAA 3 cut(s) 17, 147, 264
TspGWI ACGGA 1 cut(s) 96
Vha464I CTTAAG 1 cut(s) 124
VspI ATTAAT 1 cut(s) 110
XapI RAATTY 2 cut(s) 43, 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.