Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011562

Physical Location & Seq

Genomic Coordinates Reverse (-)

5759428 .. 5761759

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG074300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAACAGATTCGGTTCTTACGAGCAGAACGCCATGACAGGCTTTGAGGGGATGAAGATGGTGGATTCAGTTGTGTGCCCAAAACCGCGTCGTTTAAGCGCCTTAAATCCGTCGCTTAACGACTCCATCAGACCTCCTTGTAGATTCTTCAATCACTACCAATCAGAGATTGAAGATTCTCAAGCAGCGTCCGAGCTTCTGGACCTGATTCTCAATAAGGGGGATAGTGGAGGTGAGAGATCCATGAAGCAATTGGCTTCGTCGCCACCCTTCTTTTGCGGGTCTCCGCCGAGCCGGGCATCCAACCCGGTCATCCAAGATGAGCAGTTTGGGAGCAGCAAGGTTGGGGGGGGCCCTTTCTCGCCGACGGCGGGGCGCAACGGAGGATGTGTCCGGATGAAATCCGGGGACAAGCCGGTTGCGGTGCGCATCGAAGGGTTTGATTGTCTTAGCAGGGACCGCAGGAACTGCAGCATCCCGTCTGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.62

Weight (kDa)

8.59

Isoelectric Point (pI)

74.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12120
malus_domestica	MD06G1216300.v1.1 MD14G1226700.v1.1
prunus_persica	Prupe.1G559100_v2.0.a1 Prupe.3G161400_v2.0.a1 Prupe.5G221400_v2.0.a1 Prupe.5G221400_v2.0.a1 Prupe.5G221400_v2.0.a1
pyrus_communis	pycom06g19270 pycom14g18810
rosa_chinensis	RchiOBHm_Chr7g0185461
rosa_laevigata	RLG00000004911
rosa_multiflora	Rmu_sc0010190.1_g000027
rosa_roxburghii	Rroxscaffold_3G00268920
rosa_rugosa	Rorug06G0469600
rosa_samantha	Rh7AG073400 Rh7BG074200 Rh7CG074400 Rh7DG074300
rosa_wichuraiana	Rw7G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	428
AccII	CGCG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	393
AciI	CCGC	6 cut(s)	86, 279, 287, 371, 422, 460
AclWI	GGATC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	151, 173
AluBI	AGCT	2 cut(s)	196, 488
AluI	AGCT	2 cut(s)	196, 488
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	234
AlwNI	CAGNNNCTG	1 cut(s)	468
Aor13HI	TCCGGA	1 cut(s)	393
AoxI	GGCC	1 cut(s)	352
ApaI	GGGCCC	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	185, 336, 471
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	101, 378, 429
AspS9I	GGNCC	4 cut(s)	202, 352, 353, 457
AsuC2I	CCSGG	3 cut(s)	296, 308, 406
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	202, 457
BaeGI	GKGCMC	2 cut(s)	80, 356
BanII	GRGCYC	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	197, 348, 483
BccI	CCATC	2 cut(s)	52, 134
BceAI	ACGGC	1 cut(s)	384
BcnI	CCSGG	3 cut(s)	296, 308, 406
BcoDI	GTCTC	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	469, 483
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	3 cut(s)	186, 337, 472
BlsI	GCNGC	3 cut(s)	187, 338, 473
Bme1390I	CCNGG	3 cut(s)	296, 308, 406
Bme18I	GGWCC	2 cut(s)	202, 457
BmgT120I	GGNCC	4 cut(s)	202, 352, 353, 457
BmiI	GGNNCC	3 cut(s)	353, 354, 458
BmrFI	CCNGG	3 cut(s)	296, 308, 406
BmsI	GCATC	3 cut(s)	308, 438, 483
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	3 cut(s)	296, 308, 406
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	415
BseAI	TCCGGA	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	6 cut(s)	57, 299, 312, 392, 402, 474
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseSI	GKGCMC	2 cut(s)	80, 356
BseXI	GCAGC	3 cut(s)	197, 348, 483
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	354
BsiSI	CCGG	5 cut(s)	295, 308, 394, 405, 416
BslFI	GGGAC	2 cut(s)	422, 470
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	2 cut(s)	422, 470
BsnI	GGCC	1 cut(s)	354
Bso31I	GGTCTC	1 cut(s)	288
Bsp120I	GGGCCC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	80, 356
Bsp13I	TCCGGA	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	239
BspACI	CCGC	6 cut(s)	86, 279, 287, 371, 422, 460
BspANI	GGCC	1 cut(s)	354
BspEI	TCCGGA	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	353, 354, 458
BspMAI	CTGCAG	1 cut(s)	473
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	6 cut(s)	57, 299, 312, 392, 402, 474
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	3 cut(s)	101, 378, 429
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	459, 468
BstSCI	CCNGG	3 cut(s)	294, 306, 404
BstSFI	CTRYAG	2 cut(s)	469, 483
BstSLI	GKGCMC	2 cut(s)	80, 356
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	197, 348, 483
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	6 cut(s)	57, 299, 312, 392, 402, 474
CaiI	CAGNNNCTG	1 cut(s)	468
CfoI	GCGC	3 cut(s)	101, 378, 429
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	4 cut(s)	202, 352, 353, 457
CseI	GACGC	2 cut(s)	77, 177
CviAII	CATG	2 cut(s)	34, 244
CviJI	RGCY	7 cut(s)	42, 196, 257, 294, 354, 415, 488
CviKI_1	RGCY	7 cut(s)	42, 196, 257, 294, 354, 415, 488
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	202, 457
EcoO109I	RGGNCCY	2 cut(s)	352, 353
EcoT38I	GRGCYC	1 cut(s)	356
FaeI	CATG	2 cut(s)	37, 247
FaiI	YATR	2 cut(s)	35, 245
FaqI	GGGAC	2 cut(s)	422, 470
FatI	CATG	2 cut(s)	33, 243
FauI	CCCGC	2 cut(s)	272, 364
Fnu4HI	GCNGC	3 cut(s)	186, 337, 472
FokI	GGATG	6 cut(s)	64, 286, 299, 399, 409, 461
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	186, 337, 472
FspAI	RTGCGCAY	1 cut(s)	428
FspI	TGCGCA	1 cut(s)	428
GlaI	GCGC	3 cut(s)	100, 377, 428
GluI	GCNGC	3 cut(s)	186, 337, 472
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	5 cut(s)	295, 308, 394, 405, 416
HgaI	GACGC	2 cut(s)	77, 177
HhaI	GCGC	3 cut(s)	101, 378, 429
Hin1II	CATG	2 cut(s)	37, 247
Hin6I	GCGC	3 cut(s)	99, 376, 427
HinP1I	GCGC	3 cut(s)	99, 376, 427
HinfI	GANTC	6 cut(s)	9, 65, 122, 144, 176, 208
HpaII	CCGG	5 cut(s)	295, 308, 394, 405, 416
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	131, 166, 193
Hpy188III	TCNNGA	2 cut(s)	200, 394
Hpy99I	CGWCG	4 cut(s)	93, 115, 265, 370
HpyAV	CCTTC	2 cut(s)	280, 428
HpyCH4V	TGCA	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	459, 468
HpyF3I	CTNAG	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	37, 247
HspAI	GCGC	3 cut(s)	99, 376, 427
Kpn2I	TCCGGA	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	3 cut(s)	197, 348, 483
LweI	GCATC	3 cut(s)	308, 438, 483
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	3 cut(s)	67, 139, 185
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	80, 356
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	4 cut(s)	40, 144, 224, 377
MroI	TCCGGA	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	95, 104, 117, 490
MspI	CCGG	5 cut(s)	295, 308, 394, 405, 416
MspR9I	CCNGG	3 cut(s)	296, 308, 406
MunI	CAATTG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	459, 468
NciI	CCSGG	3 cut(s)	296, 308, 406
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	37, 247
NlaIV	GGNNCC	3 cut(s)	353, 354, 458
NmeAIII	GCCGAG	1 cut(s)	315
NsbI	TGCGCA	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	9, 65, 144, 176, 208
PkrI	GCNGC	3 cut(s)	187, 338, 473
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	353, 354, 458
PspOMI	GGGCCC	1 cut(s)	352
PspPI	GGNCC	4 cut(s)	202, 352, 353, 457
PstI	CTGCAG	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	95, 104, 117, 490
SatI	GCNGC	3 cut(s)	186, 337, 472
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	4 cut(s)	202, 352, 353, 457
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	296, 308, 406
SduI	GDGCHC	2 cut(s)	80, 356
SetI	ASST	6 cut(s)	136, 198, 207, 235, 345, 490
SfaNI	GCATC	3 cut(s)	308, 438, 483
SfcI	CTRYAG	2 cut(s)	469, 483
SinI	GGWCC	2 cut(s)	202, 457
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	6 cut(s)	86, 279, 287, 371, 422, 460
StyD4I	CCNGG	3 cut(s)	294, 306, 404
TaqI	TCGA	1 cut(s)	432
TasI	AATT	1 cut(s)	251
TfiI	GAWTC	5 cut(s)	9, 65, 144, 176, 208
Tru1I	TTAA	4 cut(s)	95, 104, 117, 490
Tru9I	TTAA	4 cut(s)	95, 104, 117, 490
TseI	GCWGC	3 cut(s)	185, 336, 471
TspDTI	ATGAA	4 cut(s)	17, 68, 260, 413
TspGWI	ACGGA	2 cut(s)	99, 396
VpaK11BI	GGWCC	2 cut(s)	202, 457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.