RchiOBHm_Chr7g0185461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011562
Physical Location & Seq
Reverse (-)
5588975 .. 5591301
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16551

Sequence Viewer

Length: 399 bp
ATGAACAGATTCGGTTCTTACGAGCAGAACGCCATGACAGGCTTTGAGGGGATGAAGATGGTGGATTCAGTTGTGTGCCCAAAACCGCGTCGTTTAAGCGCCTTAAATCCGTCGCTTAACGACTCCATCAGACCTCCTTGTAGATTCTTCAATCACTACCAATCAGAGATTGAAGATTCTCAAGCAGCGTCCGAGCTTCTGGACCTGATTCTCAATAAGGGGGATAGTGGAGGTGAGAGATCCATGAAGCAATTGGCTTCGTCGCCACCCTTCTTTTGCGGGTCTCCGCCGAGCCGGGCATCCAACCCGGTCATCCAAGATGAGCAGTTTGGGAGCAGCAAGGTTGGGGGGGCCCTTTCTCGCCGACGGCGGGGCGCAACGGAGGATGTGTCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.39

Weight (kDa)

7.72

Isoelectric Point (pI)

86.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 392
AciI CCGC 4 cut(s) 86, 279, 287, 370
AclWI GGATC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 2 cut(s) 151, 173
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 1 cut(s) 234
Aor13HI TCCGGA 1 cut(s) 392
AoxI GGCC 1 cut(s) 351
ApaI GGGCCC 1 cut(s) 355
ApeKI GCWGC 2 cut(s) 185, 336
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 101, 377
AspS9I GGNCC 3 cut(s) 202, 351, 352
AsuC2I CCSGG 2 cut(s) 296, 308
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 202
BaeGI GKGCMC 2 cut(s) 80, 355
BanII GRGCYC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 197, 348
BccI CCATC 2 cut(s) 52, 134
BceAI ACGGC 1 cut(s) 383
BcnI CCSGG 2 cut(s) 296, 308
BcoDI GTCTC 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 2 cut(s) 186, 337
BlsI GCNGC 2 cut(s) 187, 338
Bme1390I CCNGG 2 cut(s) 296, 308
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 3 cut(s) 202, 351, 352
BmiI GGNNCC 2 cut(s) 352, 353
BmrFI CCNGG 2 cut(s) 296, 308
BmsI GCATC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 296, 308
BsaI GGTCTC 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 392
BseGI GGATG 4 cut(s) 57, 299, 312, 391
BseLI CCNNNNNNNGG 1 cut(s) 370
BseSI GKGCMC 2 cut(s) 80, 355
BseXI GCAGC 2 cut(s) 197, 348
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 353
BsiSI CCGG 3 cut(s) 295, 308, 393
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 288
Bsp120I GGGCCC 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 80, 355
Bsp13I TCCGGA 1 cut(s) 392
Bsp143I GATC 1 cut(s) 239
BspACI CCGC 4 cut(s) 86, 279, 287, 370
BspANI GGCC 1 cut(s) 353
BspEI TCCGGA 1 cut(s) 392
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 352, 353
BspPI GGATC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 288
BssMI GATC 1 cut(s) 239
BstF5I GGATG 4 cut(s) 57, 299, 312, 391
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 2 cut(s) 101, 377
BstKTI GATC 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 294, 306
BstSLI GKGCMC 2 cut(s) 80, 355
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 197, 348
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 4 cut(s) 57, 299, 312, 391
CfoI GCGC 2 cut(s) 101, 377
Cfr13I GGNCC 3 cut(s) 202, 351, 352
CseI GACGC 2 cut(s) 77, 177
CviAII CATG 2 cut(s) 34, 244
CviJI RGCY 5 cut(s) 42, 196, 257, 294, 353
CviKI_1 RGCY 5 cut(s) 42, 196, 257, 294, 353
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
EciI GGCGGA 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 202
EcoO109I RGGNCCY 2 cut(s) 351, 352
EcoT38I GRGCYC 1 cut(s) 355
FaeI CATG 2 cut(s) 37, 247
FaiI YATR 2 cut(s) 35, 245
FatI CATG 2 cut(s) 33, 243
FauI CCCGC 2 cut(s) 272, 363
Fnu4HI GCNGC 2 cut(s) 186, 337
FokI GGATG 3 cut(s) 64, 286, 299
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 2 cut(s) 186, 337
GlaI GCGC 2 cut(s) 100, 376
GluI GCNGC 2 cut(s) 186, 337
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 353
HapII CCGG 3 cut(s) 295, 308, 393
HgaI GACGC 2 cut(s) 77, 177
HhaI GCGC 2 cut(s) 101, 377
Hin1II CATG 2 cut(s) 37, 247
Hin6I GCGC 2 cut(s) 99, 375
HinP1I GCGC 2 cut(s) 99, 375
HinfI GANTC 6 cut(s) 9, 65, 122, 144, 176, 208
HpaII CCGG 3 cut(s) 295, 308, 393
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 3 cut(s) 131, 166, 193
Hpy188III TCNNGA 2 cut(s) 200, 393
Hpy99I CGWCG 4 cut(s) 93, 115, 265, 369
HpyAV CCTTC 1 cut(s) 280
Hsp92II CATG 2 cut(s) 37, 247
HspAI GCGC 2 cut(s) 99, 375
Kpn2I TCCGGA 1 cut(s) 392
Kzo9I GATC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 5 cut(s) 24, 185, 218, 308, 321
Lsp1109I GCAGC 2 cut(s) 197, 348
LweI GCATC 1 cut(s) 308
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 3 cut(s) 67, 139, 185
MfeI CAATTG 1 cut(s) 251
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 2 cut(s) 80, 355
MluCI AATT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 4 cut(s) 40, 144, 224, 376
MroI TCCGGA 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 95, 104, 117
MspI CCGG 3 cut(s) 295, 308, 393
MspR9I CCNGG 2 cut(s) 296, 308
MunI CAATTG 1 cut(s) 251
MvnI CGCG 1 cut(s) 88
NciI CCSGG 2 cut(s) 296, 308
NdeII GATC 1 cut(s) 239
NlaIII CATG 2 cut(s) 37, 247
NlaIV GGNNCC 2 cut(s) 352, 353
NmeAIII GCCGAG 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 5 cut(s) 9, 65, 144, 176, 208
PkrI GCNGC 2 cut(s) 187, 338
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 352, 353
PspOMI GGGCCC 1 cut(s) 351
PspPI GGNCC 3 cut(s) 202, 351, 352
PsuI RGATCY 1 cut(s) 239
SaqAI TTAA 3 cut(s) 95, 104, 117
SatI GCNGC 2 cut(s) 186, 337
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 3 cut(s) 202, 351, 352
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 296, 308
SduI GDGCHC 2 cut(s) 80, 355
SetI ASST 5 cut(s) 136, 198, 207, 235, 345
SfaNI GCATC 1 cut(s) 308
SinI GGWCC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 1 cut(s) 251
SsiI CCGC 4 cut(s) 86, 279, 287, 370
StyD4I CCNGG 2 cut(s) 294, 306
TasI AATT 1 cut(s) 251
TfiI GAWTC 5 cut(s) 9, 65, 144, 176, 208
Tru1I TTAA 3 cut(s) 95, 104, 117
Tru9I TTAA 3 cut(s) 95, 104, 117
TseI GCWGC 2 cut(s) 185, 336
TspDTI ATGAA 3 cut(s) 17, 68, 260
TspGWI ACGGA 2 cut(s) 99, 395
VpaK11BI GGWCC 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.