Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012727

Physical Location & Seq

Genomic Coordinates Reverse (-)

8390669 .. 8395657

Gene Structure 4989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGAAGGGTTAAGTTAAAGATAAAGAAATTGGAGAGCAGTGGCAATCGGCAGGTTACTTATTCAAAAAGGAGGAATGGCATCTTGAAGAAGGCCAAGGAATTGTCAATCTTGTGTGATGTGGACATTACACTTCTTATGTTTTCCCCGACTGGAAGGCCTACATTGTTCCAAGGGGAGCGCAGCAATTTTGAAGACATTATTGCAAAGTTTGCCCACTTAACTCCACAGGAGAGGGCGAAAAGGAAATTGGAGAGCCTTGAGGTACTGAAGAAAACTTTTAAGAAGTTAGACCACGATGTAAATGTACAAGAGTTTGTGGGTTCCAGCACACAGACAGTTGAGGATCTGACAAATCATGCAAGAGAAATGCAAAGCCAACTCACGGAACTGCATAAGAGACTGAGCTTTTGGAGTAATCCAGAGAAGGTTGACAATGTAGAACAGCTAAGGCAGATGGAAGACATGCTTAACGAATCAATAAGGCGAACACGTCTGCACAAGGAAAACTTTGAAAAACATCAACTAGCTTCACTGAATTGCACAAGCCAGTTTCAAAACGGGATACCTTCATCTTTAATTGTGGGTAGTATGCAAGAAACTCAACCTATACCTTGGATTTTGAATAATGACAATCAACATTTGTTATTACCCAACGAGGCAACCTTTCTGCCTCATAGAGATGTGGACTGCTCTACTAATGCCTCTGTAGCACGATTTAATAGTTACTTTGGCGGCGGCGCCAGCACTAGTACTAGCACTGGCAAACAATCTGAGGTTGGTGATCCAGGGCAACTTGATAATATGGGGCAAATTCCTAGTATGGAAGGAGGTTGTGGCTTGAATGAGTATGACATAAATGCTTGTTTGAGTACAGAACTTGGCGAGCAGTATGCGTATCCATCATATTGCAATCCTAATGTGCCAGACGATAAAAAATTGAAGTCTGGTTTAGAAATGAACTTACCAACAAATTCAGTGGATTATCAAGCAAGTACCAACTTCGAATTGCCTCAATCTTTGTATGGTGACGAGCATCCTTCTTGGCTTTCATCTTCCGGGCCTAGCAGCATTGCTGTATACGATGAGAATACTTACCAGCAGCAACCAAACATGAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

375

Amino Acids

42.16

Weight (kDa)

5.79

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 55	1.3e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012727)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780
malus_domestica	MD06G1194900.v1.1 MD14G1201900.v1.1
pyrus_communis	pycom06g17240 pycom14g16720
rosa_chinensis	RchiOBHm_Chr7g0181601
rosa_laevigata	RLG00000005180
rosa_roxburghii	Rroxscaffold_3G00271860
rosa_rugosa	Rorug06G0442400
rosa_samantha	Rh7AG044800 Rh7BG043800 Rh7CG045500 Rh7DG044400
rosa_wichuraiana	Rw7G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	1080
AciI	CCGC	2 cut(s)	735, 738
AclWI	GGATC	2 cut(s)	354, 779
AcsI	RAATTY	2 cut(s)	813, 973
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	5 cut(s)	267, 309, 754, 874, 997
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflIII	ACRYGT	1 cut(s)	491
AgsI	TTSAA	8 cut(s)	66, 88, 194, 515, 557, 625, 844, 943
AhlI	ACTAGT	1 cut(s)	749
AjiI	CACGTC	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	787
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	408, 448, 530
AluI	AGCT	3 cut(s)	408, 448, 530
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	354, 779
AoxI	GGCC	3 cut(s)	93, 158, 1061
ApeKI	GCWGC	3 cut(s)	183, 1068, 1102
ApoI	RAATTY	2 cut(s)	813, 973
ArsI	GACNNNNNNTTYG	2 cut(s)	393, 425
AspLEI	GCGC	2 cut(s)	183, 743
AspS9I	GGNCC	1 cut(s)	1061
AsuC2I	CCSGG	1 cut(s)	1060
AsuHPI	GGTGA	2 cut(s)	794, 1040
AsuII	TTCGAA	1 cut(s)	1005
BanI	GGYRCC	1 cut(s)	740
BbsI	GAAGAC	2 cut(s)	201, 468
BbvI	GCAGC	3 cut(s)	195, 1080, 1114
BccI	CCATC	2 cut(s)	451, 910
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	1 cut(s)	789
BciVI	GTATCC	2 cut(s)	558, 909
BcnI	CCSGG	1 cut(s)	1060
BcoDI	GTCTC	1 cut(s)	394
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	5 cut(s)	527, 750, 756, 819, 1065
BfmI	CTRYAG	1 cut(s)	708
BfoI	RGCGCY	1 cut(s)	744
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	2 cut(s)	558, 909
BisI	GCNGC	5 cut(s)	184, 736, 739, 1069, 1103
BlsI	GCNGC	5 cut(s)	185, 737, 740, 1070, 1104
BmcAI	AGTACT	1 cut(s)	754
Bme1390I	CCNGG	2 cut(s)	789, 1060
BmgBI	CACGTC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	1061
BmiI	GGNNCC	2 cut(s)	325, 742
BmrFI	CCNGG	2 cut(s)	789, 1060
BmsI	GCATC	2 cut(s)	90, 1045
BpiI	GAAGAC	2 cut(s)	201, 468
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	1060
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	4 cut(s)	96, 172, 614, 788
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	3 cut(s)	157, 550, 766
Bse3DI	GCAATG	1 cut(s)	1071
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	4 cut(s)	96, 172, 614, 788
BseGI	GGATG	1 cut(s)	1036
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	1071
BseMII	CTCAG	2 cut(s)	395, 765
BseNI	ACTGG	3 cut(s)	157, 550, 766
BseXI	GCAGC	3 cut(s)	195, 1080, 1114
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	3 cut(s)	95, 160, 1063
BshNI	GGYRCC	1 cut(s)	740
BsiSI	CCGG	1 cut(s)	1059
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	3 cut(s)	95, 160, 1063
Bsp119I	TTCGAA	1 cut(s)	1005
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	346, 784
BspACI	CCGC	2 cut(s)	735, 738
BspANI	GGCC	3 cut(s)	95, 160, 1063
BspCNI	CTCAG	2 cut(s)	396, 766
BspLI	GGNNCC	2 cut(s)	325, 742
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	354, 779
BspT104I	TTCGAA	1 cut(s)	1005
BspT107I	GGYRCC	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	1071
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	3 cut(s)	157, 550, 766
BssECI	CCNNGG	4 cut(s)	96, 172, 614, 788
BssMI	GATC	2 cut(s)	346, 784
BssNAI	GTATAC	1 cut(s)	1081
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	3 cut(s)	96, 172, 614
Bst1107I	GTATAC	1 cut(s)	1081
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	741
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	1005
BstC8I	GCNNGC	2 cut(s)	745, 887
BstDEI	CTNAG	3 cut(s)	404, 449, 774
BstF5I	GGATG	1 cut(s)	1036
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	2 cut(s)	183, 743
BstKTI	GATC	2 cut(s)	349, 787
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	346, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 710, 744
BstNI	CCWGG	1 cut(s)	789
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	787, 1058
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	195, 1080, 1114
BstV2I	GAAGAC	2 cut(s)	201, 468
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BstZ17I	GTATAC	1 cut(s)	1081
BsuI	GTATCC	2 cut(s)	558, 909
BsuRI	GGCC	3 cut(s)	95, 160, 1063
BtrI	CACGTC	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	1036
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	4 cut(s)	46, 533, 759, 984
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	745, 887
CfoI	GCGC	2 cut(s)	183, 743
Cfr13I	GGNCC	1 cut(s)	1061
Csp6I	GTAC	5 cut(s)	266, 308, 753, 873, 996
CspCI	CAANNNNNGTGG	2 cut(s)	960, 995
CviAII	CATG	3 cut(s)	359, 466, 1114
CviQI	GTAC	5 cut(s)	266, 308, 753, 873, 996
DdeI	CTNAG	3 cut(s)	404, 449, 774
DinI	GGCGCC	1 cut(s)	742
DpnI	GATC	2 cut(s)	348, 786
DpnII	GATC	2 cut(s)	346, 784
Eco130I	CCWWGG	3 cut(s)	96, 172, 614
Eco147I	AGGCCT	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	787
EcoT14I	CCWWGG	3 cut(s)	96, 172, 614
EgeI	GGCGCC	1 cut(s)	742
EheI	GGCGCC	1 cut(s)	742
ErhI	CCWWGG	3 cut(s)	96, 172, 614
FaeI	CATG	3 cut(s)	362, 469, 1117
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 494, 526
FatI	CATG	3 cut(s)	358, 465, 1113
FblI	GTMKAC	1 cut(s)	1080
Fnu4HI	GCNGC	5 cut(s)	184, 736, 739, 1069, 1103
FokI	GGATG	1 cut(s)	1023
Fsp4HI	GCNGC	5 cut(s)	184, 736, 739, 1069, 1103
FspBI	CTAG	5 cut(s)	527, 750, 756, 819, 1065
GlaI	GCGC	2 cut(s)	182, 742
GluI	GCNGC	5 cut(s)	184, 736, 739, 1069, 1103
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	3 cut(s)	95, 160, 1063
HapII	CCGG	1 cut(s)	1059
HhaI	GCGC	2 cut(s)	183, 743
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	3 cut(s)	362, 469, 1117
Hin6I	GCGC	2 cut(s)	181, 741
HinP1I	GCGC	2 cut(s)	181, 741
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	2 cut(s)	794, 1040
Hpy166II	GTNNAC	4 cut(s)	124, 433, 688, 1081
Hpy188I	TCNGA	2 cut(s)	351, 775
Hpy188III	TCNNGA	2 cut(s)	85, 422
Hpy8I	GTNNAC	4 cut(s)	124, 433, 688, 1081
HpyAV	CCTTC	6 cut(s)	85, 150, 421, 579, 821, 1050
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	8 cut(s)	206, 362, 373, 394, 499, 543, 595, 912
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 710, 744
HpyF3I	CTNAG	3 cut(s)	404, 449, 774
HpySE526I	ACGT	1 cut(s)	493
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	3 cut(s)	362, 469, 1117
HspAI	GCGC	2 cut(s)	181, 741
KasI	GGCGCC	1 cut(s)	740
Kzo9I	GATC	2 cut(s)	346, 784
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	3 cut(s)	195, 1080, 1114
LweI	GCATC	2 cut(s)	90, 1045
MaeI	CTAG	5 cut(s)	527, 750, 756, 819, 1065
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	3 cut(s)	55, 725, 1028
MalI	GATC	2 cut(s)	348, 786
MboI	GATC	2 cut(s)	346, 784
MboII	GAAGA	5 cut(s)	100, 206, 283, 473, 1047
MflI	RGATCY	1 cut(s)	346
Mly113I	GGCGCC	1 cut(s)	741
MseI	TTAA	7 cut(s)	12, 17, 221, 282, 471, 578, 720
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	2 cut(s)	789, 1060
MvaI	CCWGG	1 cut(s)	789
MwoI	GCNNNNNNNGC	3 cut(s)	212, 710, 744
NarI	GGCGCC	1 cut(s)	741
NciI	CCSGG	1 cut(s)	1060
NdeII	GATC	2 cut(s)	346, 784
NlaIII	CATG	3 cut(s)	362, 469, 1117
NlaIV	GGNNCC	2 cut(s)	325, 742
NmuCI	GTSAC	1 cut(s)	1028
NspI	RCATGY	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	1005
PceI	AGGCCT	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	185, 737, 740, 1070, 1104
PluTI	GGCGCC	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	2 cut(s)	325, 742
PspPI	GGNCC	1 cut(s)	1061
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	5 cut(s)	267, 309, 754, 874, 997
RsaNI	GTAC	5 cut(s)	266, 308, 753, 873, 996
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	7 cut(s)	12, 17, 221, 282, 471, 578, 720
SatI	GCNGC	5 cut(s)	184, 736, 739, 1069, 1103
Sau3AI	GATC	2 cut(s)	346, 784
Sau96I	GGNCC	1 cut(s)	1061
ScaI	AGTACT	1 cut(s)	754
ScrFI	CCNGG	2 cut(s)	789, 1060
SfaNI	GCATC	2 cut(s)	90, 1045
SfcI	CTRYAG	1 cut(s)	708
SfoI	GGCGCC	1 cut(s)	742
SfuI	TTCGAA	1 cut(s)	1005
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	749
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	735, 738
SspDI	GGCGCC	1 cut(s)	740
SspMI	CTAG	5 cut(s)	527, 750, 756, 819, 1065
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	787, 1058
StyI	CCWWGG	3 cut(s)	96, 172, 614
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	1005
TatI	WGTACW	3 cut(s)	307, 752, 872
TauI	GCSGC	2 cut(s)	738, 741
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	7 cut(s)	12, 17, 221, 282, 471, 578, 720
Tru9I	TTAA	7 cut(s)	12, 17, 221, 282, 471, 578, 720
TscAI	CASTG	4 cut(s)	46, 540, 766, 984
TseFI	GTSAC	1 cut(s)	1028
TseI	GCWGC	3 cut(s)	183, 1068, 1102
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	3 cut(s)	561, 974, 1041
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	4 cut(s)	46, 540, 766, 984
XapI	RAATTY	2 cut(s)	813, 973
XceI	RCATGY	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	1080
XspI	CTAG	5 cut(s)	527, 750, 756, 819, 1065
ZrmI	AGTACT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.