Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012727

Physical Location & Seq

Genomic Coordinates Forward (+)

32947706 .. 32950766

Gene Structure 3061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1194900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGAAGGGTTAAGTTAAAGATAAAGAAACTAGAGAGCAGTGGGAACCGGCAGGTTACGTTTTCAAAACGGAGAAATGGGATCTTGAAGAAAGCTAAGGAGTTATCAATCTTATGTGATGTAGATATTGTCCTTCTCATGTTTTCCCCCACTGGAAGGCCTACATTATTCCAAGGGGAGCGCAGTAATATTGAAGAGATTATTTCAAAGTTTGCGCAATTAACTCCGCAGGAGAGGGCAAAGAGGAAATTGGAGAGCCTTGAAGTACTGAAGAAAACTTTTAAGAAGTTGGATCATGACGTTAACGTACAAGATTTCATGAGTTCAAGCTCTCAGACGGTTCAGGATCTGACTCATCAAGTAATGGTATTGCAAGCCCAACTTACAGAACTCCATAGGAGACTGAGCTTATGGAGTGACCCAGATAAGGTTGACAATCTTGAACAGCTTCGGCAGATGGAAGACATGCTTAAGGAATCAATCAACCGAACACGTCTGCATAAGGAAAATTTGGGAAAACACCAACTAACATCACTAGATTGCACAAATCAGTTTCAAAATGGAATGCCTTCGTCTTTCTTAGTTGGTGGTTCGCAAGAAGCTCAACCTATAACTTGGCTTTTCAATAGCGACAATCAGCACATGATATTACCGAATGAGCAGAACTATCTGCCACATAGAGGTGTGGAGTGCTCAACAAATACCACAGTTCCACATTATATTCGTTACTTTGGCACTGGGACTAGCACTAGCTCTAGCACCGGAAAACAATCTGAGGCTGGTGATCCATTACAGCTAGATACTATGGGACAAATTTCTAATATGGAAGGAGGCGGTGGCTTCAATGAGTTTGACATTAATGCTTGTTTAAGTACGGAATCTGGTGAGCATTATGCGTATCCAACATATTGTAGTTCTAATGTGCCAGACGATAAGAAAGTGAAGCCGGAGAATGAAATGAACGTACCAGCAAATCCAGTGGATTATCAACTAAGTAGCAACTTTGAACTGCCAAGATCCTTGTATGAAAATGATCATCATGCTTGGCTTTCTTCGCCTGGCCCTAGCGGCATTGCTGTGTACAAGGAGAATACCTACCAGCCGCAACCAAACGTGAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

375

Amino Acids

42.31

Weight (kDa)

6.28

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 55	1.7e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012727)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780
malus_domestica	MD06G1194900.v1.1 MD14G1201900.v1.1
pyrus_communis	pycom06g17240 pycom14g16720
rosa_chinensis	RchiOBHm_Chr7g0181601
rosa_laevigata	RLG00000005180
rosa_roxburghii	Rroxscaffold_3G00271860
rosa_rugosa	Rorug06G0442400
rosa_samantha	Rh7AG044800 Rh7BG043800 Rh7CG045500 Rh7DG044400
rosa_wichuraiana	Rw7G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	4 cut(s)	227, 834, 1068, 1103
AclWI	GGATC	5 cut(s)	89, 300, 354, 779, 1011
AcsI	RAATTY	2 cut(s)	508, 813
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	5 cut(s)	267, 309, 874, 966, 1082
AfiI	CCNNNNNNNGG	3 cut(s)	156, 427, 680
AflII	CTTAAG	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	491
AjiI	CACGTC	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	1057
AluBI	AGCT	7 cut(s)	95, 330, 408, 448, 602, 753, 796
AluI	AGCT	7 cut(s)	95, 330, 408, 448, 602, 753, 796
Alw21I	GWGCWC	1 cut(s)	695
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	5 cut(s)	89, 300, 354, 779, 1011
AlwNI	CAGNNNCTG	1 cut(s)	349
AoxI	GGCC	2 cut(s)	158, 1060
ApoI	RAATTY	2 cut(s)	508, 813
AseI	ATTAAT	1 cut(s)	858
Asp700I	GAANNNNTTC	2 cut(s)	447, 568
AspLEI	GCGC	2 cut(s)	183, 217
AspS9I	GGNCC	1 cut(s)	1061
AsuHPI	GGTGA	2 cut(s)	794, 896
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	695
BccI	CCATC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	1059
BciVI	GTATCC	1 cut(s)	909
BclI	TGATCA	1 cut(s)	1033
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	7 cut(s)	32, 536, 744, 750, 756, 797, 1065
BfrI	CTTAAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	909
BglI	GCCNNNNNGGC	1 cut(s)	1068
BisI	GCNGC	2 cut(s)	1069, 1103
BlsI	GCNGC	2 cut(s)	1070, 1104
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	1059
BmgBI	CACGTC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	1061
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	1059
BmrI	ACTGGG	1 cut(s)	747
BmuI	ACTGGG	1 cut(s)	747
BpiI	GAAGAC	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	761
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 427, 680
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	3 cut(s)	157, 742, 977
Bse3DI	GCAATG	1 cut(s)	1071
BseBI	CCWGG	1 cut(s)	1059
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	3 cut(s)	156, 427, 680
BseMI	GCAATG	1 cut(s)	1071
BseMII	CTCAG	3 cut(s)	347, 395, 765
BseNI	ACTGG	3 cut(s)	157, 742, 977
BshFI	GGCC	2 cut(s)	160, 1062
BsiHKAI	GWGCWC	1 cut(s)	695
BsiSI	CCGG	3 cut(s)	49, 762, 947
BslFI	GGGAC	2 cut(s)	754, 822
BslI	CCNNNNNNNGG	3 cut(s)	156, 427, 680
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	754, 822
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	160, 1062
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp1407I	TGTACA	1 cut(s)	1080
Bsp143I	GATC	6 cut(s)	81, 292, 346, 784, 1016, 1033
BspACI	CCGC	4 cut(s)	227, 834, 1068, 1103
BspANI	GGCC	2 cut(s)	160, 1062
BspCNI	CTCAG	3 cut(s)	346, 396, 766
BspHI	TCATGA	2 cut(s)	295, 318
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	5 cut(s)	89, 300, 354, 779, 1011
BspTI	CTTAAG	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	1071
BsrFI	RCCGGY	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	1080
BsrI	ACTGG	3 cut(s)	157, 742, 977
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	6 cut(s)	81, 292, 346, 784, 1016, 1033
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	1059
Bst4CI	ACNGT	2 cut(s)	340, 709
Bst6I	CTCTTC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	1080
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	6 cut(s)	96, 333, 404, 580, 774, 992
BstHHI	GCGC	2 cut(s)	183, 217
BstKTI	GATC	6 cut(s)	84, 295, 349, 787, 1019, 1036
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	6 cut(s)	81, 292, 346, 784, 1016, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	1054, 1068
BstNI	CCWGG	1 cut(s)	1059
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	1057
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	3 cut(s)	81, 346, 1016
BstYI	RGATCY	3 cut(s)	81, 346, 1016
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	2 cut(s)	160, 1062
BtrI	CACGTC	1 cut(s)	494
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	4 cut(s)	46, 150, 735, 984
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	349
CciI	TCATGA	2 cut(s)	295, 318
CfoI	GCGC	2 cut(s)	183, 217
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	1061
Csp6I	GTAC	5 cut(s)	266, 308, 873, 965, 1081
CspCI	CAANNNNNGTGG	2 cut(s)	960, 995
CviAII	CATG	6 cut(s)	139, 296, 319, 466, 643, 1040
CviQI	GTAC	5 cut(s)	266, 308, 873, 965, 1081
DdeI	CTNAG	6 cut(s)	96, 333, 404, 580, 774, 992
DpnI	GATC	6 cut(s)	83, 294, 348, 786, 1018, 1035
DpnII	GATC	6 cut(s)	81, 292, 346, 784, 1016, 1033
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	1057
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	6 cut(s)	142, 299, 322, 469, 646, 1043
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 453, 485
FaqI	GGGAC	2 cut(s)	754, 822
FatI	CATG	6 cut(s)	138, 295, 318, 465, 642, 1039
FbaI	TGATCA	1 cut(s)	1033
Fnu4HI	GCNGC	2 cut(s)	1069, 1103
Fsp4HI	GCNGC	2 cut(s)	1069, 1103
FspBI	CTAG	7 cut(s)	32, 536, 744, 750, 756, 797, 1065
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	2 cut(s)	182, 216
GluI	GCNGC	2 cut(s)	1069, 1103
HaeIII	GGCC	2 cut(s)	160, 1062
HapII	CCGG	3 cut(s)	49, 762, 947
HhaI	GCGC	2 cut(s)	183, 217
Hin1II	CATG	6 cut(s)	142, 299, 322, 469, 646, 1043
Hin6I	GCGC	2 cut(s)	181, 215
HinP1I	GCGC	2 cut(s)	181, 215
HincII	GTYRAC	2 cut(s)	304, 433
HindII	GTYRAC	2 cut(s)	304, 433
HinfI	GANTC	3 cut(s)	352, 476, 878
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	3 cut(s)	49, 762, 947
HphI	GGTGA	2 cut(s)	794, 896
Hpy166II	GTNNAC	3 cut(s)	304, 433, 1081
Hpy188I	TCNGA	3 cut(s)	336, 351, 775
Hpy188III	TCNNGA	5 cut(s)	85, 296, 319, 344, 440
Hpy8I	GTNNAC	3 cut(s)	304, 433, 1081
HpyAV	CCTTC	4 cut(s)	143, 150, 579, 821
HpyCH4III	ACNGT	2 cut(s)	340, 709
HpyCH4IV	ACGT	6 cut(s)	59, 300, 306, 493, 963, 1113
HpyCH4V	TGCA	3 cut(s)	373, 499, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1054, 1068
HpyF3I	CTNAG	6 cut(s)	96, 333, 404, 580, 774, 992
HpySE526I	ACGT	6 cut(s)	59, 300, 306, 493, 963, 1113
Hsp92II	CATG	6 cut(s)	142, 299, 322, 469, 646, 1043
HspAI	GCGC	2 cut(s)	181, 215
Ksp22I	TGATCA	1 cut(s)	1033
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	6 cut(s)	81, 292, 346, 784, 1016, 1033
LmnI	GCTCC	1 cut(s)	178
MaeI	CTAG	7 cut(s)	32, 536, 744, 750, 756, 797, 1065
MaeII	ACGT	6 cut(s)	59, 300, 306, 493, 963, 1113
MaeIII	GTNAC	3 cut(s)	55, 416, 725
MalI	GATC	6 cut(s)	83, 294, 348, 786, 1018, 1035
MboI	GATC	6 cut(s)	81, 292, 346, 784, 1016, 1033
MboII	GAAGA	5 cut(s)	100, 206, 283, 473, 1044
MflI	RGATCY	3 cut(s)	81, 346, 1016
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	4 cut(s)	218, 248, 508, 813
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	2 cut(s)	270, 926
MnlI	CCTC	5 cut(s)	228, 237, 674, 769, 824
MroXI	GAANNNNTTC	2 cut(s)	447, 568
MseI	TTAA	8 cut(s)	12, 17, 221, 282, 303, 471, 858, 869
MslI	CAYNNNNRTG	2 cut(s)	681, 1076
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	3 cut(s)	49, 762, 947
MspR9I	CCNGG	1 cut(s)	1059
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	1059
MwoI	GCNNNNNNNGC	2 cut(s)	1054, 1068
NdeII	GATC	6 cut(s)	81, 292, 346, 784, 1016, 1033
NlaIII	CATG	6 cut(s)	142, 299, 322, 469, 646, 1043
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	416
NsbI	TGCGCA	1 cut(s)	216
NspI	RCATGY	1 cut(s)	469
PagI	TCATGA	2 cut(s)	295, 318
PceI	AGGCCT	1 cut(s)	160
PctI	GAATGC	1 cut(s)	570
PdmI	GAANNNNTTC	2 cut(s)	447, 568
PfeI	GAWTC	2 cut(s)	476, 878
PkrI	GCNGC	2 cut(s)	1070, 1104
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	1057
PspGI	CCWGG	1 cut(s)	1057
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	1061
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	3 cut(s)	81, 346, 1016
RsaI	GTAC	5 cut(s)	267, 309, 874, 966, 1082
RsaNI	GTAC	5 cut(s)	266, 308, 873, 965, 1081
RseI	CAYNNNNRTG	2 cut(s)	681, 1076
SaqAI	TTAA	8 cut(s)	12, 17, 221, 282, 303, 471, 858, 869
SatI	GCNGC	2 cut(s)	1069, 1103
Sau3AI	GATC	6 cut(s)	81, 292, 346, 784, 1016, 1033
Sau96I	GGNCC	1 cut(s)	1061
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	1059
SduI	GDGCHC	1 cut(s)	695
SmiMI	CAYNNNNRTG	2 cut(s)	681, 1076
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	4 cut(s)	218, 248, 508, 813
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	4 cut(s)	227, 834, 1068, 1103
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	7 cut(s)	32, 536, 744, 750, 756, 797, 1065
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	1057
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	340, 709
TaiI	ACGT	6 cut(s)	62, 303, 309, 496, 966, 1116
TasI	AATT	4 cut(s)	218, 248, 508, 813
TatI	WGTACW	2 cut(s)	265, 1080
TauI	GCSGC	2 cut(s)	1071, 1105
TfiI	GAWTC	2 cut(s)	476, 878
Tru1I	TTAA	8 cut(s)	12, 17, 221, 282, 303, 471, 858, 869
Tru9I	TTAA	8 cut(s)	12, 17, 221, 282, 303, 471, 858, 869
TscAI	CASTG	4 cut(s)	46, 157, 742, 984
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	307, 969, 974, 1041
TspGWI	ACGGA	2 cut(s)	85, 890
TspRI	CASTG	4 cut(s)	46, 157, 742, 984
Vha464I	CTTAAG	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	858
XapI	RAATTY	2 cut(s)	508, 813
XceI	RCATGY	1 cut(s)	469
XmnI	GAANNNNTTC	2 cut(s)	447, 568
XspI	CTAG	7 cut(s)	32, 536, 744, 750, 756, 797, 1065
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.