Rh7DG044400
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012727
Physical Location & Seq
Forward (+)
3372621 .. 3375599
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG044400.1

Sequence Viewer

Length: 774 bp
ATGGGAAGGGTTAAGTTAAAGATAAAGAAATTGGAGAGCAGTGGCAATCGACAGGTTACTTATTCGAAACGGAGAAATGGCATCTTGAAAAAGGCCAAGGAGTTATCAATCTTATGTGATGTAGACATTACGCTTCTCATGTTTTCCCCAGCTGGAAGGCCTACATTGTTCCAAGGGGAGCGCAGCAATTTTGAAGACATTATTGCAAAGTTTGCCCACTTAACTCCACAGGAGAGGGTGAAAAGGAAGTTGGAGAGCCTTGAAGTACTGAAGAAAACTTTTAAGAAGTTGGACCATGATGTAAATGTACAAGAATTTGTGGGTTCCAGAGACGTGGACTGCTCTACAAATGCCTCAGTAGCACGATTTAATAGTTACTTTGGCAGTGGCGCCAGCACTAGTACTAGCACTGGTAAACAATCTGAGGTTGGTGATCCAGGACAACTTGATAATATGGGGCACATTCCTAGTATGGAAGGAGGTTGTGGCTTGAATGAGTATGACATAAATGCTTGTTTAAGTACAGAACTTGGCCAGCAGTATGCGTATCCATCATATTGCAATCCTAATGTGCCAGACGATAAAAAATTGAAGCCTGGTGTGGAAATGAACTTACCAACAAATTCGGTGGATTATCAAGCAAGTAGCAACTTCGAACTGTCTCGATCTTTGTATGGTGATGAGCATCCTTCTTGGCTTTCATCTTCCGGGCCTAGCACCATTGCTGTATATGACCAGAATACGTACCAGCAGCAACCAAACATGAGATTGTAG

Protein Analysis

257

Amino Acids

28.55

Weight (kDa)

7.6

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 11 - 55 1.7e-21 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 123
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 2 cut(s) 314, 622
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 5 cut(s) 267, 309, 403, 523, 746
AgsI TTSAA 5 cut(s) 88, 194, 263, 493, 592
AhlI ACTAGT 1 cut(s) 398
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 2 cut(s) 436, 595
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 324, 666
AlwI GGATC 1 cut(s) 428
AoxI GGCC 4 cut(s) 93, 158, 532, 710
ApeKI GCWGC 2 cut(s) 183, 751
ApoI RAATTY 2 cut(s) 314, 622
AspLEI GCGC 2 cut(s) 183, 392
AspS9I GGNCC 2 cut(s) 292, 710
AsuC2I CCSGG 1 cut(s) 709
AsuHPI GGTGA 3 cut(s) 250, 443, 689
AsuII TTCGAA 2 cut(s) 65, 654
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 462
BalI TGGCCA 1 cut(s) 534
BanI GGYRCC 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 195, 763
BccI CCATC 1 cut(s) 559
BciT130I CCWGG 2 cut(s) 438, 597
BciVI GTATCC 1 cut(s) 558
BcnI CCSGG 1 cut(s) 709
BcoDI GTCTC 2 cut(s) 324, 666
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 4 cut(s) 399, 405, 468, 714
BfoI RGCGCY 1 cut(s) 393
BfuI GTATCC 1 cut(s) 558
BisI GCNGC 2 cut(s) 184, 752
BlsI GCNGC 2 cut(s) 185, 753
BmcAI AGTACT 2 cut(s) 267, 403
Bme1390I CCNGG 3 cut(s) 438, 597, 709
Bme18I GGWCC 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 292, 710
BmiI GGNNCC 2 cut(s) 325, 391
BmrFI CCNGG 3 cut(s) 438, 597, 709
BmsI GCATC 2 cut(s) 90, 694
BpiI GAAGAC 1 cut(s) 201
Bpu14I TTCGAA 2 cut(s) 65, 654
BpuMI CCSGG 1 cut(s) 709
BsaAI YACGTR 1 cut(s) 744
BsaBI GATNNNNATC 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 96, 172
Bse1I ACTGG 1 cut(s) 415
Bse3DI GCAATG 1 cut(s) 720
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 2 cut(s) 438, 597
BseDI CCNNGG 2 cut(s) 96, 172
BseGI GGATG 1 cut(s) 685
BseJI GATNNNNATC 1 cut(s) 684
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 2 cut(s) 369, 414
BseNI ACTGG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 2 cut(s) 195, 763
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 4 cut(s) 95, 160, 534, 712
BshNI GGYRCC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 708
BsmAI GTCTC 2 cut(s) 324, 666
BsmBI CGTCTC 1 cut(s) 324
BsnI GGCC 4 cut(s) 95, 160, 534, 712
Bsp119I TTCGAA 2 cut(s) 65, 654
Bsp1286I GDGCHC 1 cut(s) 462
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 2 cut(s) 433, 665
BspANI GGCC 4 cut(s) 95, 160, 534, 712
BspCNI CTCAG 2 cut(s) 368, 415
BspLI GGNNCC 2 cut(s) 325, 391
BspPI GGATC 1 cut(s) 428
BspT104I TTCGAA 2 cut(s) 65, 654
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 720
BsrGI TGTACA 1 cut(s) 307
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 96, 172
BssMI GATC 2 cut(s) 433, 665
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 96, 172
Bst2UI CCWGG 2 cut(s) 438, 597
Bst4CI ACNGT 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 744
BstBI TTCGAA 2 cut(s) 65, 654
BstC8I GCNNGC 2 cut(s) 394, 536
BstDEI CTNAG 2 cut(s) 355, 423
BstF5I GGATG 1 cut(s) 685
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 2 cut(s) 183, 392
BstKTI GATC 2 cut(s) 436, 668
BstMAI GTCTC 2 cut(s) 324, 666
BstMBI GATC 2 cut(s) 433, 665
BstMWI GCNNNNNNNGC 2 cut(s) 212, 359
BstNI CCWGG 2 cut(s) 438, 597
BstSCI CCNGG 3 cut(s) 436, 595, 707
BstSLI GKGCMC 1 cut(s) 462
BstSNI TACGTA 1 cut(s) 744
BstV1I GCAGC 2 cut(s) 195, 763
BstV2I GAAGAC 1 cut(s) 201
BstXI CCANNNNNNTGG 1 cut(s) 334
BsuI GTATCC 1 cut(s) 558
BsuRI GGCC 4 cut(s) 95, 160, 534, 712
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 1 cut(s) 685
BtsI GCAGTG 2 cut(s) 46, 391
BtsIMutI CAGTG 3 cut(s) 46, 391, 408
Cac8I GCNNGC 2 cut(s) 394, 536
CfoI GCGC 2 cut(s) 183, 392
Cfr13I GGNCC 2 cut(s) 292, 710
Csp6I GTAC 5 cut(s) 266, 308, 402, 522, 745
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviAII CATG 3 cut(s) 139, 296, 763
CviJI RGCY 9 cut(s) 95, 152, 160, 258, 489, 534, 595, 697, 712
CviKI_1 RGCY 9 cut(s) 95, 152, 160, 258, 489, 534, 595, 697, 712
CviQI GTAC 5 cut(s) 266, 308, 402, 522, 745
DdeI CTNAG 2 cut(s) 355, 423
DinI GGCGCC 1 cut(s) 391
DpnI GATC 2 cut(s) 435, 667
DpnII GATC 2 cut(s) 433, 665
EaeI YGGCCR 1 cut(s) 532
Eco105I TACGTA 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 96, 172
Eco147I AGGCCT 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 436, 595
EcoT14I CCWWGG 2 cut(s) 96, 172
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 96, 172
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 3 cut(s) 142, 299, 766
FatI CATG 3 cut(s) 138, 295, 762
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 184, 752
FokI GGATG 1 cut(s) 672
Fsp4HI GCNGC 2 cut(s) 184, 752
FspBI CTAG 4 cut(s) 399, 405, 468, 714
GlaI GCGC 2 cut(s) 182, 391
GluI GCNGC 2 cut(s) 184, 752
GsaI CCCAGC 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 393
HaeIII GGCC 4 cut(s) 95, 160, 534, 712
HapII CCGG 1 cut(s) 708
HhaI GCGC 2 cut(s) 183, 392
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 3 cut(s) 142, 299, 766
Hin6I GCGC 2 cut(s) 181, 390
HinP1I GCGC 2 cut(s) 181, 390
HpaII CCGG 1 cut(s) 708
HphI GGTGA 3 cut(s) 250, 443, 689
Hpy166II GTNNAC 3 cut(s) 124, 337, 416
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 3 cut(s) 85, 327, 663
Hpy8I GTNNAC 3 cut(s) 124, 337, 416
HpyAV CCTTC 3 cut(s) 150, 470, 699
HpyCH4III ACNGT 1 cut(s) 660
HpyCH4IV ACGT 2 cut(s) 333, 743
HpyCH4V TGCA 2 cut(s) 206, 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 359
HpyF3I CTNAG 2 cut(s) 355, 423
HpySE526I ACGT 2 cut(s) 333, 743
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 3 cut(s) 142, 299, 766
HspAI GCGC 2 cut(s) 181, 390
KasI GGCGCC 1 cut(s) 389
Kzo9I GATC 2 cut(s) 433, 665
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 195, 763
LweI GCATC 2 cut(s) 90, 694
MaeI CTAG 4 cut(s) 399, 405, 468, 714
MaeII ACGT 2 cut(s) 333, 743
MaeIII GTNAC 2 cut(s) 55, 374
MalI GATC 2 cut(s) 435, 667
MboI GATC 2 cut(s) 433, 665
MboII GAAGA 3 cut(s) 206, 283, 696
MhlI GDGCHC 1 cut(s) 462
MlsI TGGCCA 1 cut(s) 534
MluCI AATT 5 cut(s) 29, 187, 314, 587, 622
MluNI TGGCCA 1 cut(s) 534
Mly113I GGCGCC 1 cut(s) 390
MmeI TCCRAC 2 cut(s) 231, 270
MnlI CCTC 4 cut(s) 228, 364, 418, 473
Mox20I TGGCCA 1 cut(s) 534
MscI TGGCCA 1 cut(s) 534
MseI TTAA 6 cut(s) 12, 17, 221, 282, 369, 518
Msp20I TGGCCA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 3 cut(s) 438, 597, 709
MvaI CCWGG 2 cut(s) 438, 597
MwoI GCNNNNNNNGC 2 cut(s) 212, 359
NarI GGCGCC 1 cut(s) 390
NciI CCSGG 1 cut(s) 709
NdeII GATC 2 cut(s) 433, 665
NlaIII CATG 3 cut(s) 142, 299, 766
NlaIV GGNNCC 2 cut(s) 325, 391
NspV TTCGAA 2 cut(s) 65, 654
PceI AGGCCT 1 cut(s) 160
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 2 cut(s) 185, 753
PluTI GGCGCC 1 cut(s) 393
Ppu21I YACGTR 1 cut(s) 744
Psp6I CCWGG 2 cut(s) 436, 595
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 2 cut(s) 436, 595
PspN4I GGNNCC 2 cut(s) 325, 391
PspPI GGNCC 2 cut(s) 292, 710
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 5 cut(s) 267, 309, 403, 523, 746
RsaNI GTAC 5 cut(s) 266, 308, 402, 522, 745
SaqAI TTAA 6 cut(s) 12, 17, 221, 282, 369, 518
SatI GCNGC 2 cut(s) 184, 752
Sau3AI GATC 2 cut(s) 433, 665
Sau96I GGNCC 2 cut(s) 292, 710
ScaI AGTACT 2 cut(s) 267, 403
ScrFI CCNGG 3 cut(s) 438, 597, 709
SduI GDGCHC 1 cut(s) 462
SetI ASST 6 cut(s) 57, 154, 336, 429, 484, 746
SfaNI GCATC 2 cut(s) 90, 694
SfoI GGCGCC 1 cut(s) 391
SfuI TTCGAA 2 cut(s) 65, 654
SinI GGWCC 1 cut(s) 292
SnaBI TACGTA 1 cut(s) 744
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 5 cut(s) 29, 187, 314, 587, 622
SseBI AGGCCT 1 cut(s) 160
SspDI GGCGCC 1 cut(s) 389
SspMI CTAG 4 cut(s) 399, 405, 468, 714
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 3 cut(s) 436, 595, 707
StyI CCWWGG 2 cut(s) 96, 172
TaaI ACNGT 1 cut(s) 660
TaiI ACGT 2 cut(s) 336, 746
TaqI TCGA 4 cut(s) 49, 65, 654, 664
TasI AATT 5 cut(s) 29, 187, 314, 587, 622
TatI WGTACW 4 cut(s) 265, 307, 401, 521
Tru1I TTAA 6 cut(s) 12, 17, 221, 282, 369, 518
Tru9I TTAA 6 cut(s) 12, 17, 221, 282, 369, 518
TscAI CASTG 3 cut(s) 46, 391, 415
TseI GCWGC 2 cut(s) 183, 751
TspDTI ATGAA 2 cut(s) 623, 690
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 3 cut(s) 46, 391, 415
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 2 cut(s) 314, 622
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 4 cut(s) 399, 405, 468, 714
ZrmI AGTACT 2 cut(s) 267, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.