Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012727

Physical Location & Seq

Genomic Coordinates Reverse (-)

65674287 .. 65677411

Gene Structure 3125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGTTGTCAAGTGCTGTTGCAATTGGGATGAAAGCTTCATTTGGACAAGTGTGATGGGAAGGGTTAAGTTAAAGATAAAGAAATTGGAGAGCAGTGGCAATCGACAGGTTACTTATTCGAAACGGAGAAATGGCATCTTGAAAAAGGCCAAGGAGTTATCAATCTTATGTGATGTAGATATTACGCTTCTCATGTTTTCCCCAACTGGAAGGCCTACATTGTTCCAAGGGGAGCGCAGCAATTTTGAAGACATTATTGCCAAGTTTGCCCACTTAACTCCACAGGAGAGGGCGAAAAGGAAGTTGGAGAGCCTTGAAGTACTGAAGAAAACTTTTAAGAAGTTGGACCATGATGTAAATGTACAAGAGTTTGTGGGTTCCAGCACTCAGACAGTTGAGAATCTAACAAATCAAGCAAGGGCATTGCAAACCCAACTTACGGAACTGCATAAGAGACTGAGCTTTTGGAGTAATCCAGAGAAGGTTGATGATGTAGAACAGCTAAGGCAGATGGAAGACATGCTTAAGGAATCAATTAGTCAAACACGTCTGCACAAGGAAAACTTTGAAAAACATCAACTAGCTTCACTGAATTGCACAGGCCAGTTTCAAAGTGGGATGCCTTCATCTTTAATCGTGGGCAGTGTGCATGAAACTCAACCAATGCCTTGGATTTTGAATAATGACAATCAACATTTGATATTACCCAACGAGGCTTCCTTTCTGCCTCATAGAGACGTGGACTGCTCTACAAATGCCTCAGTAGCACGATTTAATAGTTACTTTGGCAGTGGCGCCAGCACTAGTACTAGCACTGGTAAACATTCTGAGGTTGGTGATCCAGGACAACTTGATAATATGGGGCACATTCCTAGTATGGAAGGAGGTTGTGGCTTGAATGAGTATGACATAAATGCTTGTTTAAGTACAGAACTTGGCCAGCAGTATGTGTATCCATCATATTGCAATCCTAATGTGCCAGATGATAAAAAATTGAAGCCTGGTTTGGAAATGAACTTACCAACAAATTCGGTTGATTATCAAGCAAGTAGCAACTTCGAACTGCCTCGATCTTTGTATGGTGATGAGCATCCTTCTTGGCTTTCATCTTCCGGGCCTAGCACCATTGCTGTATATGACCAGAATACGTACCAGCAGCAACCAAACATGAGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

393

Amino Acids

44.19

Weight (kDa)

6.15

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	29 - 73	1.3e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012727)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780
malus_domestica	MD06G1194900.v1.1 MD14G1201900.v1.1
pyrus_communis	pycom06g17240 pycom14g16720
rosa_chinensis	RchiOBHm_Chr7g0181601
rosa_laevigata	RLG00000005180
rosa_roxburghii	Rroxscaffold_3G00271860
rosa_rugosa	Rorug06G0442400
rosa_samantha	Rh7AG044800 Rh7BG043800 Rh7CG045500 Rh7DG044400
rosa_wichuraiana	Rw7G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	794
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	1 cut(s)	1027
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	795
AfaI	GTAC	5 cut(s)	321, 363, 808, 928, 1151
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflII	CTTAAG	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	8 cut(s)	142, 248, 317, 569, 611, 679, 898, 997
AhlI	ACTAGT	1 cut(s)	803
AjiI	CACGTC	2 cut(s)	548, 739
AjnI	CCWGG	2 cut(s)	841, 1000
AjuI	GAANNNNNNNTTGG	4 cut(s)	287, 319, 989, 1021
AluBI	AGCT	4 cut(s)	36, 462, 502, 584
AluI	AGCT	4 cut(s)	36, 462, 502, 584
Alw26I	GTCTC	2 cut(s)	448, 729
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	5 cut(s)	147, 212, 601, 937, 1115
ApeKI	GCWGC	2 cut(s)	237, 1156
ApoI	RAATTY	1 cut(s)	1027
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
AspLEI	GCGC	2 cut(s)	237, 797
AspS9I	GGNCC	2 cut(s)	346, 1115
AsuC2I	CCSGG	1 cut(s)	1114
AsuHPI	GGTGA	2 cut(s)	848, 1094
AsuII	TTCGAA	2 cut(s)	119, 1059
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	867
BalI	TGGCCA	1 cut(s)	939
BanI	GGYRCC	1 cut(s)	794
BbsI	GAAGAC	2 cut(s)	255, 522
BbvI	GCAGC	2 cut(s)	249, 1168
BccI	CCATC	3 cut(s)	49, 505, 964
BciT130I	CCWGG	2 cut(s)	843, 1002
BciVI	GTATCC	1 cut(s)	963
BcnI	CCSGG	1 cut(s)	1114
BcoDI	GTCTC	2 cut(s)	448, 729
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	5 cut(s)	581, 804, 810, 873, 1119
BfoI	RGCGCY	1 cut(s)	798
BfrI	CTTAAG	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	963
BisI	GCNGC	2 cut(s)	238, 1157
BlsI	GCNGC	2 cut(s)	239, 1158
BmcAI	AGTACT	2 cut(s)	321, 808
Bme1390I	CCNGG	3 cut(s)	843, 1002, 1114
Bme18I	GGWCC	1 cut(s)	346
BmgBI	CACGTC	2 cut(s)	548, 739
BmgT120I	GGNCC	2 cut(s)	346, 1115
BmiI	GGNNCC	2 cut(s)	379, 796
BmrFI	CCNGG	3 cut(s)	843, 1002, 1114
BmsI	GCATC	3 cut(s)	144, 609, 1099
BpiI	GAAGAC	2 cut(s)	255, 522
Bpu10I	CCTNAGC	1 cut(s)	503
Bpu14I	TTCGAA	2 cut(s)	119, 1059
BpuMI	CCSGG	1 cut(s)	1114
BsaAI	YACGTR	1 cut(s)	1149
BsaBI	GATNNNNATC	1 cut(s)	1089
BsaHI	GRCGYC	1 cut(s)	795
BsaJI	CCNNGG	3 cut(s)	150, 226, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	3 cut(s)	211, 604, 820
Bse3DI	GCAATG	2 cut(s)	422, 1125
Bse8I	GATNNNNATC	1 cut(s)	1089
BseBI	CCWGG	2 cut(s)	843, 1002
BseDI	CCNNGG	3 cut(s)	150, 226, 668
BseGI	GGATG	3 cut(s)	34, 624, 1090
BseJI	GATNNNNATC	1 cut(s)	1089
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	2 cut(s)	422, 1125
BseMII	CTCAG	4 cut(s)	401, 449, 774, 819
BseNI	ACTGG	3 cut(s)	211, 604, 820
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	2 cut(s)	249, 1168
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	5 cut(s)	149, 214, 603, 939, 1117
BshNI	GGYRCC	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	1113
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	448, 729
BsmBI	CGTCTC	1 cut(s)	729
BsnI	GGCC	5 cut(s)	149, 214, 603, 939, 1117
Bsp119I	TTCGAA	2 cut(s)	119, 1059
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	838, 1070
BspANI	GGCC	5 cut(s)	149, 214, 603, 939, 1117
BspCNI	CTCAG	4 cut(s)	400, 450, 773, 820
BspLI	GGNNCC	2 cut(s)	379, 796
BspPI	GGATC	1 cut(s)	833
BspT104I	TTCGAA	2 cut(s)	119, 1059
BspT107I	GGYRCC	1 cut(s)	794
BspTI	CTTAAG	1 cut(s)	524
BsrDI	GCAATG	2 cut(s)	422, 1125
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	211, 604, 820
BssECI	CCNNGG	3 cut(s)	150, 226, 668
BssMI	GATC	2 cut(s)	838, 1070
BssNI	GRCGYC	1 cut(s)	795
BssT1I	CCWWGG	3 cut(s)	150, 226, 668
Bst2UI	CCWGG	2 cut(s)	843, 1002
Bst4CI	ACNGT	1 cut(s)	394
BstACI	GRCGYC	1 cut(s)	795
BstAFI	CTTAAG	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	1149
BstBI	TTCGAA	2 cut(s)	119, 1059
BstC8I	GCNNGC	2 cut(s)	799, 941
BstDEI	CTNAG	5 cut(s)	387, 458, 503, 760, 828
BstF5I	GGATG	3 cut(s)	34, 624, 1090
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	2 cut(s)	237, 797
BstKTI	GATC	2 cut(s)	841, 1073
BstMAI	GTCTC	2 cut(s)	448, 729
BstMBI	GATC	2 cut(s)	838, 1070
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 764
BstNI	CCWGG	2 cut(s)	843, 1002
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	841, 1000, 1112
BstSLI	GKGCMC	1 cut(s)	867
BstSNI	TACGTA	1 cut(s)	1149
BstV1I	GCAGC	2 cut(s)	249, 1168
BstV2I	GAAGAC	2 cut(s)	255, 522
BstXI	CCANNNNNNTGG	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	963
BsuRI	GGCC	5 cut(s)	149, 214, 603, 939, 1117
BtrI	CACGTC	2 cut(s)	548, 739
BtsCI	GGATG	3 cut(s)	34, 624, 1090
BtsI	GCAGTG	3 cut(s)	100, 649, 796
BtsIMutI	CAGTG	5 cut(s)	100, 587, 649, 796, 813
Cac8I	GCNNGC	2 cut(s)	799, 941
CfoI	GCGC	2 cut(s)	237, 797
Cfr13I	GGNCC	2 cut(s)	346, 1115
Csp6I	GTAC	5 cut(s)	320, 362, 807, 927, 1150
CviAII	CATG	5 cut(s)	193, 350, 520, 650, 1168
CviQI	GTAC	5 cut(s)	320, 362, 807, 927, 1150
DdeI	CTNAG	5 cut(s)	387, 458, 503, 760, 828
DinI	GGCGCC	1 cut(s)	796
DpnI	GATC	2 cut(s)	840, 1072
DpnII	GATC	2 cut(s)	838, 1070
EaeI	YGGCCR	1 cut(s)	937
Eco105I	TACGTA	1 cut(s)	1149
Eco130I	CCWWGG	3 cut(s)	150, 226, 668
Eco147I	AGGCCT	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	841, 1000
EcoT14I	CCWWGG	3 cut(s)	150, 226, 668
EgeI	GGCGCC	1 cut(s)	796
EheI	GGCGCC	1 cut(s)	796
ErhI	CCWWGG	3 cut(s)	150, 226, 668
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	5 cut(s)	196, 353, 523, 653, 1171
FalI	AAGNNNNNCTT	4 cut(s)	507, 539, 548, 580
FatI	CATG	5 cut(s)	192, 349, 519, 649, 1167
Fnu4HI	GCNGC	2 cut(s)	238, 1157
FokI	GGATG	3 cut(s)	41, 631, 1077
Fsp4HI	GCNGC	2 cut(s)	238, 1157
FspBI	CTAG	5 cut(s)	581, 804, 810, 873, 1119
GlaI	GCGC	2 cut(s)	236, 796
GluI	GCNGC	2 cut(s)	238, 1157
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	5 cut(s)	149, 214, 603, 939, 1117
HapII	CCGG	1 cut(s)	1113
HhaI	GCGC	2 cut(s)	237, 797
Hin1I	GRCGYC	1 cut(s)	795
Hin1II	CATG	5 cut(s)	196, 353, 523, 653, 1171
Hin6I	GCGC	2 cut(s)	235, 795
HinP1I	GCGC	2 cut(s)	235, 795
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	400, 530
HpaII	CCGG	1 cut(s)	1113
HphI	GGTGA	2 cut(s)	848, 1094
Hpy166II	GTNNAC	2 cut(s)	742, 821
Hpy188I	TCNGA	2 cut(s)	390, 829
Hpy188III	TCNNGA	2 cut(s)	139, 476
Hpy8I	GTNNAC	2 cut(s)	742, 821
HpyAV	CCTTC	6 cut(s)	54, 204, 475, 633, 875, 1104
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	3 cut(s)	547, 738, 1148
HpyCH4V	TGCA	7 cut(s)	21, 427, 448, 553, 597, 649, 966
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 764
HpyF3I	CTNAG	5 cut(s)	387, 458, 503, 760, 828
HpySE526I	ACGT	3 cut(s)	547, 738, 1148
Hsp92I	GRCGYC	1 cut(s)	795
Hsp92II	CATG	5 cut(s)	196, 353, 523, 653, 1171
HspAI	GCGC	2 cut(s)	235, 795
KasI	GGCGCC	1 cut(s)	794
Kzo9I	GATC	2 cut(s)	838, 1070
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	2 cut(s)	249, 1168
LweI	GCATC	3 cut(s)	144, 609, 1099
MaeI	CTAG	5 cut(s)	581, 804, 810, 873, 1119
MaeII	ACGT	3 cut(s)	547, 738, 1148
MaeIII	GTNAC	2 cut(s)	109, 779
MalI	GATC	2 cut(s)	840, 1072
MboI	GATC	2 cut(s)	838, 1070
MboII	GAAGA	4 cut(s)	260, 337, 527, 1101
MfeI	CAATTG	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	867
MlsI	TGGCCA	1 cut(s)	939
MluCI	AATT	7 cut(s)	22, 83, 241, 534, 592, 992, 1027
MluNI	TGGCCA	1 cut(s)	939
Mly113I	GGCGCC	1 cut(s)	795
MmeI	TCCRAC	2 cut(s)	285, 324
MnlI	CCTC	7 cut(s)	282, 706, 738, 769, 823, 878, 1077
Mox20I	TGGCCA	1 cut(s)	939
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	8 cut(s)	66, 71, 275, 336, 525, 632, 774, 923
Msp20I	TGGCCA	1 cut(s)	939
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	1 cut(s)	1113
MspR9I	CCNGG	3 cut(s)	843, 1002, 1114
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	843, 1002
MwoI	GCNNNNNNNGC	2 cut(s)	266, 764
NarI	GGCGCC	1 cut(s)	795
NciI	CCSGG	1 cut(s)	1114
NdeII	GATC	2 cut(s)	838, 1070
NlaIII	CATG	5 cut(s)	196, 353, 523, 653, 1171
NlaIV	GGNNCC	2 cut(s)	379, 796
NspI	RCATGY	1 cut(s)	523
NspV	TTCGAA	2 cut(s)	119, 1059
PceI	AGGCCT	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	400, 530
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	2 cut(s)	239, 1158
PluTI	GGCGCC	1 cut(s)	798
Ppu21I	YACGTR	1 cut(s)	1149
Psp6I	CCWGG	2 cut(s)	841, 1000
PspGI	CCWGG	2 cut(s)	841, 1000
PspN4I	GGNNCC	2 cut(s)	379, 796
PspPI	GGNCC	2 cut(s)	346, 1115
RsaI	GTAC	5 cut(s)	321, 363, 808, 928, 1151
RsaNI	GTAC	5 cut(s)	320, 362, 807, 927, 1150
SaqAI	TTAA	8 cut(s)	66, 71, 275, 336, 525, 632, 774, 923
SatI	GCNGC	2 cut(s)	238, 1157
Sau3AI	GATC	2 cut(s)	838, 1070
Sau96I	GGNCC	2 cut(s)	346, 1115
ScaI	AGTACT	2 cut(s)	321, 808
ScrFI	CCNGG	3 cut(s)	843, 1002, 1114
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	3 cut(s)	144, 609, 1099
SfoI	GGCGCC	1 cut(s)	796
SfuI	TTCGAA	2 cut(s)	119, 1059
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SnaBI	TACGTA	1 cut(s)	1149
SpeI	ACTAGT	1 cut(s)	803
Sse9I	AATT	7 cut(s)	22, 83, 241, 534, 592, 992, 1027
SseBI	AGGCCT	1 cut(s)	214
SspDI	GGCGCC	1 cut(s)	794
SspMI	CTAG	5 cut(s)	581, 804, 810, 873, 1119
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	841, 1000, 1112
StyI	CCWWGG	3 cut(s)	150, 226, 668
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	3 cut(s)	550, 741, 1151
TaqI	TCGA	4 cut(s)	103, 119, 1059, 1069
TasI	AATT	7 cut(s)	22, 83, 241, 534, 592, 992, 1027
TatI	WGTACW	4 cut(s)	319, 361, 806, 926
TfiI	GAWTC	2 cut(s)	400, 530
Tru1I	TTAA	8 cut(s)	66, 71, 275, 336, 525, 632, 774, 923
Tru9I	TTAA	8 cut(s)	66, 71, 275, 336, 525, 632, 774, 923
TscAI	CASTG	5 cut(s)	100, 594, 649, 796, 820
TseI	GCWGC	2 cut(s)	237, 1156
TspDTI	ATGAA	6 cut(s)	28, 45, 615, 666, 1028, 1095
TspGWI	ACGGA	2 cut(s)	139, 455
TspRI	CASTG	5 cut(s)	100, 594, 649, 796, 820
Vha464I	CTTAAG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	1027
XceI	RCATGY	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XspI	CTAG	5 cut(s)	581, 804, 810, 873, 1119
ZrmI	AGTACT	2 cut(s)	321, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.