Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0012727

Physical Location & Seq

Genomic Coordinates Forward (+)

18913301 .. 18916002

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16720.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGAAGGGTTAAGTTAAAGATAAAGAAATTAGAGAGCAGTGGTAACCGGCAGGTTACATTTTCAAAACGGAGAAATGGAATCTTGAAGAAAGCTAAGGAGTTGTCAATCTTATGTGATGTAGATATTGTCCTTCTCATGTTTTCGCCCACTGGAAGGCCTACGATTTTCCAAGGGGACCGCAGCTTTTGGAGCGACCCAGATAAGGTTGACAATCTTGAACAGCTTAGGCAGATGGAAGACATGCTTAAGGAATCAATCAACCGAACCTGTCTACGCAAGGAAAATTTGGGAAAACATCAACTAACATCACTAGATTGCACAAACCAGTTTCAAAATGGAATGCCTTCGTCTTTATTAGTTGGTGGTGGTATGCAAGAAGCTCAACCTATAACTTGGCTTTTCAATAGCAACAATCAACATATGATATTCCCGAATGAGCCGAACTATCTTCCACATAGAGGTGTGGAGTGCTCTACAAATGCCACTGTTCCACATTATACTAGTTACTTTGGCACTGGGACGAGCACTAGCCCTAGCACCAGCAAACAATCTGAGGCCGGTGATCCAGTACAACTAGATACTATGGGACAAATTTCTAATATGGAAGGAGGCGGTGGCTTAAATGAGTTTGACATTAATGCTTGTTTAAGTACGGAACCTGGTAAGCATTATGCTTATCCATCATATTGTAGTTCTTACGTGCCAGACGATCAGAAATTGAAGCATGAAATGGAAAAGAACGTACCAGCAAATCCGGTGGACTATCAACTAAGTAGCAACTTTGAACTGCCAACATCTTTGTATGAAACTGATCAGCATGCTTGGCTTTCTTCATCTGGGCCTAGCGGCATTGCTGTGTACAAGGAGAATACCTACCAACCGCAACCAAACGTGAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

302

Amino Acids

33.66

Weight (kDa)

6.0

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012727)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780
malus_domestica	MD06G1194900.v1.1 MD14G1201900.v1.1
pyrus_communis	pycom06g17240 pycom14g16720
rosa_chinensis	RchiOBHm_Chr7g0181601
rosa_laevigata	RLG00000005180
rosa_roxburghii	Rroxscaffold_3G00271860
rosa_rugosa	Rorug06G0442400
rosa_samantha	Rh7AG044800 Rh7BG043800 Rh7CG045500 Rh7DG044400
rosa_wichuraiana	Rw7G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	4 cut(s)	181, 615, 849, 884
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	2 cut(s)	286, 594
AfaI	GTAC	4 cut(s)	573, 655, 747, 863
AfiI	CCNNNNNNNGG	3 cut(s)	156, 205, 461
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	7 cut(s)	66, 88, 221, 335, 406, 724, 788
AhlI	ACTAGT	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	4 cut(s)	95, 186, 226, 383
AluI	AGCT	4 cut(s)	95, 186, 226, 383
Alw21I	GWGCWC	2 cut(s)	476, 530
AlwI	GGATC	1 cut(s)	560
AoxI	GGCC	3 cut(s)	158, 558, 842
ApeKI	GCWGC	1 cut(s)	183
ApoI	RAATTY	2 cut(s)	286, 594
AseI	ATTAAT	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	178, 842
AsuHPI	GGTGA	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	476, 530
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	2 cut(s)	229, 691
BciT130I	CCWGG	1 cut(s)	663
BclI	TGATCA	1 cut(s)	814
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	6 cut(s)	314, 504, 531, 537, 578, 846
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	184, 850
BlsI	GCNGC	2 cut(s)	185, 851
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	178, 842
BmiI	GGNNCC	2 cut(s)	179, 660
BmrFI	CCNGG	1 cut(s)	663
BmrI	ACTGGG	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	2 cut(s)	96, 227
BsaAI	YACGTR	1 cut(s)	703
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 205, 461
Bse118I	RCCGGY	2 cut(s)	48, 560
Bse1I	ACTGG	4 cut(s)	157, 328, 523, 569
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	3 cut(s)	156, 205, 461
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	4 cut(s)	157, 328, 523, 569
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	3 cut(s)	160, 560, 844
BsiHKAI	GWGCWC	2 cut(s)	476, 530
BsiSI	CCGG	3 cut(s)	49, 561, 758
BslFI	GGGAC	3 cut(s)	191, 535, 603
BslI	CCNNNNNNNGG	3 cut(s)	156, 205, 461
BsmFI	GGGAC	3 cut(s)	191, 535, 603
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	160, 560, 844
Bsp1286I	GDGCHC	2 cut(s)	476, 530
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	3 cut(s)	565, 712, 814
BspACI	CCGC	4 cut(s)	181, 615, 849, 884
BspANI	GGCC	3 cut(s)	160, 560, 844
BspCNI	CTCAG	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	179, 660
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	560
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	852
BsrFI	RCCGGY	2 cut(s)	48, 560
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	4 cut(s)	157, 328, 523, 569
BssAI	RCCGGY	2 cut(s)	48, 560
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	3 cut(s)	565, 712, 814
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	490
BstAFI	CTTAAG	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	861
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	4 cut(s)	96, 227, 555, 773
BstEII	GGTNACC	1 cut(s)	44
BstKTI	GATC	3 cut(s)	568, 715, 817
BstMBI	GATC	3 cut(s)	565, 712, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 826
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	2 cut(s)	247, 824
BstPI	GGTNACC	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	661
BstV1I	GCAGC	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	160, 560, 844
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	4 cut(s)	46, 150, 486, 516
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	822
Cfr10I	RCCGGY	2 cut(s)	48, 560
Cfr13I	GGNCC	2 cut(s)	178, 842
CsiI	ACCWGGT	1 cut(s)	661
Csp6I	GTAC	4 cut(s)	572, 654, 746, 862
CspCI	CAANNNNNGTGG	2 cut(s)	741, 776
CviAII	CATG	4 cut(s)	139, 244, 728, 821
CviQI	GTAC	4 cut(s)	572, 654, 746, 862
DdeI	CTNAG	4 cut(s)	96, 227, 555, 773
DpnI	GATC	3 cut(s)	567, 714, 816
DpnII	GATC	3 cut(s)	565, 712, 814
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	4 cut(s)	142, 247, 731, 824
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	3 cut(s)	191, 535, 603
FatI	CATG	4 cut(s)	138, 243, 727, 820
FauNDI	CATATG	1 cut(s)	423
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	184, 850
Fsp4HI	GCNGC	2 cut(s)	184, 850
FspBI	CTAG	6 cut(s)	314, 504, 531, 537, 578, 846
GluI	GCNGC	2 cut(s)	184, 850
HaeIII	GGCC	3 cut(s)	160, 560, 844
HapII	CCGG	3 cut(s)	49, 561, 758
Hin1II	CATG	4 cut(s)	142, 247, 731, 824
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	81, 254
HpaII	CCGG	3 cut(s)	49, 561, 758
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	4 cut(s)	211, 275, 763, 862
Hpy188I	TCNGA	2 cut(s)	556, 717
Hpy188III	TCNNGA	3 cut(s)	85, 218, 433
Hpy8I	GTNNAC	4 cut(s)	211, 275, 763, 862
HpyAV	CCTTC	4 cut(s)	143, 150, 357, 602
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	3 cut(s)	702, 744, 894
HpyCH4V	TGCA	2 cut(s)	321, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 826
HpyF3I	CTNAG	4 cut(s)	96, 227, 555, 773
HpySE526I	ACGT	3 cut(s)	702, 744, 894
Hsp92II	CATG	4 cut(s)	142, 247, 731, 824
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	3 cut(s)	565, 712, 814
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	1 cut(s)	195
MabI	ACCWGGT	1 cut(s)	661
MaeI	CTAG	6 cut(s)	314, 504, 531, 537, 578, 846
MaeII	ACGT	3 cut(s)	702, 744, 894
MaeIII	GTNAC	3 cut(s)	44, 55, 506
MalI	GATC	3 cut(s)	567, 714, 816
MboI	GATC	3 cut(s)	565, 712, 814
MboII	GAAGA	4 cut(s)	100, 251, 443, 825
MhlI	GDGCHC	2 cut(s)	476, 530
MluCI	AATT	4 cut(s)	29, 286, 594, 719
MnlI	CCTC	3 cut(s)	455, 550, 605
MroXI	GAANNNNTTC	1 cut(s)	346
MseI	TTAA	6 cut(s)	12, 17, 249, 623, 639, 650
MslI	CAYNNNNRTG	2 cut(s)	462, 857
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	3 cut(s)	49, 561, 758
MspR9I	CCNGG	1 cut(s)	663
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	2 cut(s)	192, 826
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	3 cut(s)	565, 712, 814
NlaIII	CATG	4 cut(s)	142, 247, 731, 824
NlaIV	GGNNCC	2 cut(s)	179, 660
NspI	RCATGY	2 cut(s)	247, 824
PaeI	GCATGC	1 cut(s)	824
PceI	AGGCCT	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PctI	GAATGC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	81, 254
PkrI	GCNGC	2 cut(s)	185, 851
Ppu21I	YACGTR	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	661
PspEI	GGTNACC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	179, 660
PspPI	GGNCC	2 cut(s)	178, 842
RsaI	GTAC	4 cut(s)	573, 655, 747, 863
RsaNI	GTAC	4 cut(s)	572, 654, 746, 862
RseI	CAYNNNNRTG	2 cut(s)	462, 857
SaqAI	TTAA	6 cut(s)	12, 17, 249, 623, 639, 650
SatI	GCNGC	2 cut(s)	184, 850
Sau3AI	GATC	3 cut(s)	565, 712, 814
Sau96I	GGNCC	2 cut(s)	178, 842
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	2 cut(s)	476, 530
SexAI	ACCWGGT	1 cut(s)	661
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	462, 857
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SpeI	ACTAGT	1 cut(s)	503
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	4 cut(s)	29, 286, 594, 719
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	4 cut(s)	181, 615, 849, 884
SspMI	CTAG	6 cut(s)	314, 504, 531, 537, 578, 846
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	661
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	3 cut(s)	705, 747, 897
TasI	AATT	4 cut(s)	29, 286, 594, 719
TatI	WGTACW	2 cut(s)	571, 861
TauI	GCSGC	1 cut(s)	852
TfiI	GAWTC	2 cut(s)	81, 254
Tru1I	TTAA	6 cut(s)	12, 17, 249, 623, 639, 650
Tru9I	TTAA	6 cut(s)	12, 17, 249, 623, 639, 650
TscAI	CASTG	4 cut(s)	46, 157, 493, 523
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	3 cut(s)	744, 822, 825
TspGWI	ACGGA	2 cut(s)	85, 671
TspRI	CASTG	4 cut(s)	46, 157, 493, 523
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	2 cut(s)	286, 594
XceI	RCATGY	2 cut(s)	247, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	346
XspI	CTAG	6 cut(s)	314, 504, 531, 537, 578, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.