Rw7G003720
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012727
Physical Location & Seq
Forward (+)
3018700 .. 3021686
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G003720.1

Sequence Viewer

Length: 1125 bp
ATGGGAAGGGTTAAGTTAAAGATAAAGAAATTGGAGAGCAGTGGCAATCGACAGGTTACTTATTCGAAACGGAGAAATGGCATCTTGAAAAAGGCCAAGGAGTTATCAATCTTATGTGATGTAGACATTACGCTTCTCATGTTTTCCCCAGCTGGAAGGCCTACATTGTTCCAAGGGGAGCGCAGCAATTTTGAAGACATTATTGCAAAGTTTGCCCACTTAACTCCACAGGAGAGGGTGAAAAGGAAGTTGGAGAGCCTTGAAGTACTGAAGAAAACTTTTAAGAAGTTGGACCATGATGTAAATGTACAAGAGTTTGTGGGTTCCAGCACTCAGACAGTTGAGAATCTGACAAATCAAGCAAGGGCATTGCAAACCCAACTTACGGAACTGCATAAGAGACTGAGCTTTTGGAGTAATCCAGAGAAGGTTGATGATGTAGAACAGCTAAGGCAGATGGAAGACATGCTTAAGGAATCAATTAGTCGAACACATCTGCACAAGGAAAACTTTGAAAAACATCAACTAGCTTCACTGAATTGCACAGGCCAGTTTCAAAATGGGATGCCTTCATCTTTAATTGTGGGCAGTGTGCATGAAACTCAACCGATGCCTTGGATTTTGAATAATGACAATCAACAATTGATATTACCCAACGAGGCTTCCTTTCTGCCTCATAGAGACGTGGACTGCTCTACAAATGCCTCAGTAGCACGATTTAATAGTTACTTTGGCAGTGGCGCCAGCACTAGTACTAGCACTGGTAAACAATCTGAGGTTGGTGATCCAGGACAACTTGATAATATGGGGCACATTCCTAGTATGGAAGGAGGTTGTGGCTTGAATGAGTATGACATAAATGCTTGTTTAAGTACAGAACTTGGCCAGCAGTATGCGTATCCATCATATTGCAATCCTAATGTGCCAGACGATAAAAAATTGAAGCCTGGTGTGGAAATGAACTTACCAACAAATTCGGTGGATTATCAAGCAAGTAGCAACTTCGAACTGTCTCGATCTTTGTATGGAGATGAGCATCCTTCTTGGCTTTCATCTTCCGGGCCTAGCACCATTGCTGTATATGACCAGAATACGTACCAGCAGCAACCAAACATGAGATTGTAG

Protein Analysis

374

Amino Acids

42.02

Weight (kDa)

6.23

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 11 - 55 3e-21 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 740
AccI GTMKAC 1 cut(s) 123
AclWI GGATC 1 cut(s) 779
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 1 cut(s) 973
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 741
AfaI GTAC 5 cut(s) 267, 309, 754, 874, 1097
AfiI CCNNNNNNNGG 1 cut(s) 385
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 8 cut(s) 88, 194, 263, 515, 557, 625, 844, 943
AhlI ACTAGT 1 cut(s) 749
AjiI CACGTC 1 cut(s) 685
AjnI CCWGG 2 cut(s) 787, 946
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 152, 408, 448, 530
AluI AGCT 4 cut(s) 152, 408, 448, 530
Alw26I GTCTC 3 cut(s) 394, 675, 1017
AlwI GGATC 1 cut(s) 779
AoxI GGCC 5 cut(s) 93, 158, 547, 883, 1061
ApeKI GCWGC 2 cut(s) 183, 1102
ApoI RAATTY 1 cut(s) 973
ArsI GACNNNNNNTTYG 2 cut(s) 393, 425
AspLEI GCGC 2 cut(s) 183, 743
AspS9I GGNCC 2 cut(s) 292, 1061
AsuC2I CCSGG 1 cut(s) 1060
AsuHPI GGTGA 2 cut(s) 250, 794
AsuII TTCGAA 2 cut(s) 65, 1005
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 813
BalI TGGCCA 1 cut(s) 885
BanI GGYRCC 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 201, 468
BbvI GCAGC 2 cut(s) 195, 1114
BccI CCATC 2 cut(s) 451, 910
BciT130I CCWGG 2 cut(s) 789, 948
BciVI GTATCC 1 cut(s) 909
BcnI CCSGG 1 cut(s) 1060
BcoDI GTCTC 3 cut(s) 394, 675, 1017
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 5 cut(s) 527, 750, 756, 819, 1065
BfoI RGCGCY 1 cut(s) 744
BfrI CTTAAG 1 cut(s) 470
BfuI GTATCC 1 cut(s) 909
BisI GCNGC 2 cut(s) 184, 1103
BlsI GCNGC 2 cut(s) 185, 1104
BmcAI AGTACT 2 cut(s) 267, 754
Bme1390I CCNGG 3 cut(s) 789, 948, 1060
Bme18I GGWCC 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 2 cut(s) 292, 1061
BmiI GGNNCC 2 cut(s) 325, 742
BmrFI CCNGG 3 cut(s) 789, 948, 1060
BmsI GCATC 4 cut(s) 90, 555, 600, 1045
BpiI GAAGAC 2 cut(s) 201, 468
Bpu10I CCTNAGC 1 cut(s) 449
Bpu14I TTCGAA 2 cut(s) 65, 1005
BpuMI CCSGG 1 cut(s) 1060
BsaAI YACGTR 1 cut(s) 1095
BsaBI GATNNNNATC 1 cut(s) 1035
BsaHI GRCGYC 1 cut(s) 741
BsaJI CCNNGG 3 cut(s) 96, 172, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 550, 766
Bse3DI GCAATG 2 cut(s) 368, 1071
Bse8I GATNNNNATC 1 cut(s) 1035
BseBI CCWGG 2 cut(s) 789, 948
BseDI CCNNGG 3 cut(s) 96, 172, 614
BseGI GGATG 2 cut(s) 570, 1036
BseJI GATNNNNATC 1 cut(s) 1035
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMI GCAATG 2 cut(s) 368, 1071
BseMII CTCAG 4 cut(s) 347, 395, 720, 765
BseNI ACTGG 2 cut(s) 550, 766
BseSI GKGCMC 1 cut(s) 813
BseXI GCAGC 2 cut(s) 195, 1114
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 5 cut(s) 95, 160, 549, 885, 1063
BshNI GGYRCC 1 cut(s) 740
BsiSI CCGG 1 cut(s) 1059
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 3 cut(s) 394, 675, 1017
BsmBI CGTCTC 1 cut(s) 675
BsnI GGCC 5 cut(s) 95, 160, 549, 885, 1063
Bsp119I TTCGAA 2 cut(s) 65, 1005
Bsp1286I GDGCHC 1 cut(s) 813
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 2 cut(s) 784, 1016
BspANI GGCC 5 cut(s) 95, 160, 549, 885, 1063
BspCNI CTCAG 4 cut(s) 346, 396, 719, 766
BspLI GGNNCC 2 cut(s) 325, 742
BspPI GGATC 1 cut(s) 779
BspT104I TTCGAA 2 cut(s) 65, 1005
BspT107I GGYRCC 1 cut(s) 740
BspTI CTTAAG 1 cut(s) 470
BsrDI GCAATG 2 cut(s) 368, 1071
BsrGI TGTACA 1 cut(s) 307
BsrI ACTGG 2 cut(s) 550, 766
BssECI CCNNGG 3 cut(s) 96, 172, 614
BssMI GATC 2 cut(s) 784, 1016
BssNI GRCGYC 1 cut(s) 741
BssT1I CCWWGG 3 cut(s) 96, 172, 614
Bst2UI CCWGG 2 cut(s) 789, 948
Bst4CI ACNGT 2 cut(s) 340, 1011
BstACI GRCGYC 1 cut(s) 741
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 1095
BstBI TTCGAA 2 cut(s) 65, 1005
BstC8I GCNNGC 2 cut(s) 745, 887
BstDEI CTNAG 5 cut(s) 333, 404, 449, 706, 774
BstF5I GGATG 2 cut(s) 570, 1036
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 2 cut(s) 183, 743
BstKTI GATC 2 cut(s) 787, 1019
BstMAI GTCTC 3 cut(s) 394, 675, 1017
BstMBI GATC 2 cut(s) 784, 1016
BstMWI GCNNNNNNNGC 2 cut(s) 212, 710
BstNI CCWGG 2 cut(s) 789, 948
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 3 cut(s) 787, 946, 1058
BstSLI GKGCMC 1 cut(s) 813
BstSNI TACGTA 1 cut(s) 1095
BstV1I GCAGC 2 cut(s) 195, 1114
BstV2I GAAGAC 2 cut(s) 201, 468
BsuI GTATCC 1 cut(s) 909
BsuRI GGCC 5 cut(s) 95, 160, 549, 885, 1063
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 2 cut(s) 570, 1036
BtsI GCAGTG 3 cut(s) 46, 595, 742
BtsIMutI CAGTG 5 cut(s) 46, 533, 595, 742, 759
Cac8I GCNNGC 2 cut(s) 745, 887
CfoI GCGC 2 cut(s) 183, 743
Cfr13I GGNCC 2 cut(s) 292, 1061
Csp6I GTAC 5 cut(s) 266, 308, 753, 873, 1096
CspCI CAANNNNNGTGG 2 cut(s) 960, 995
CviAII CATG 5 cut(s) 139, 296, 466, 596, 1114
CviQI GTAC 5 cut(s) 266, 308, 753, 873, 1096
DdeI CTNAG 5 cut(s) 333, 404, 449, 706, 774
DinI GGCGCC 1 cut(s) 742
DpnI GATC 2 cut(s) 786, 1018
DpnII GATC 2 cut(s) 784, 1016
EaeI YGGCCR 1 cut(s) 883
Eco105I TACGTA 1 cut(s) 1095
Eco130I CCWWGG 3 cut(s) 96, 172, 614
Eco147I AGGCCT 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 787, 946
EcoT14I CCWWGG 3 cut(s) 96, 172, 614
EgeI GGCGCC 1 cut(s) 742
EheI GGCGCC 1 cut(s) 742
ErhI CCWWGG 3 cut(s) 96, 172, 614
Esp3I CGTCTC 1 cut(s) 675
FaeI CATG 5 cut(s) 142, 299, 469, 599, 1117
FalI AAGNNNNNCTT 4 cut(s) 453, 485, 494, 526
FatI CATG 5 cut(s) 138, 295, 465, 595, 1113
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 184, 1103
FokI GGATG 2 cut(s) 577, 1023
Fsp4HI GCNGC 2 cut(s) 184, 1103
FspBI CTAG 5 cut(s) 527, 750, 756, 819, 1065
GlaI GCGC 2 cut(s) 182, 742
GluI GCNGC 2 cut(s) 184, 1103
GsaI CCCAGC 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 744
HaeIII GGCC 5 cut(s) 95, 160, 549, 885, 1063
HapII CCGG 1 cut(s) 1059
HhaI GCGC 2 cut(s) 183, 743
Hin1I GRCGYC 1 cut(s) 741
Hin1II CATG 5 cut(s) 142, 299, 469, 599, 1117
Hin6I GCGC 2 cut(s) 181, 741
HinP1I GCGC 2 cut(s) 181, 741
HinfI GANTC 2 cut(s) 346, 476
HpaII CCGG 1 cut(s) 1059
HphI GGTGA 2 cut(s) 250, 794
Hpy166II GTNNAC 3 cut(s) 124, 688, 767
Hpy188I TCNGA 3 cut(s) 336, 351, 775
Hpy188III TCNNGA 3 cut(s) 85, 422, 1014
Hpy8I GTNNAC 3 cut(s) 124, 688, 767
HpyAV CCTTC 5 cut(s) 150, 421, 579, 821, 1050
HpyCH4III ACNGT 2 cut(s) 340, 1011
HpyCH4IV ACGT 2 cut(s) 684, 1094
HpyCH4V TGCA 7 cut(s) 206, 373, 394, 499, 543, 595, 912
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 710
HpyF3I CTNAG 5 cut(s) 333, 404, 449, 706, 774
HpySE526I ACGT 2 cut(s) 684, 1094
Hsp92I GRCGYC 1 cut(s) 741
Hsp92II CATG 5 cut(s) 142, 299, 469, 599, 1117
HspAI GCGC 2 cut(s) 181, 741
KasI GGCGCC 1 cut(s) 740
Kzo9I GATC 2 cut(s) 784, 1016
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 195, 1114
LweI GCATC 4 cut(s) 90, 555, 600, 1045
MaeI CTAG 5 cut(s) 527, 750, 756, 819, 1065
MaeII ACGT 2 cut(s) 684, 1094
MaeIII GTNAC 2 cut(s) 55, 725
MalI GATC 2 cut(s) 786, 1018
MboI GATC 2 cut(s) 784, 1016
MboII GAAGA 4 cut(s) 206, 283, 473, 1047
MfeI CAATTG 1 cut(s) 641
MhlI GDGCHC 1 cut(s) 813
MlsI TGGCCA 1 cut(s) 885
MluCI AATT 8 cut(s) 29, 187, 480, 538, 579, 641, 938, 973
MluNI TGGCCA 1 cut(s) 885
Mly113I GGCGCC 1 cut(s) 741
MmeI TCCRAC 2 cut(s) 231, 270
MnlI CCTC 6 cut(s) 228, 652, 684, 715, 769, 824
Mox20I TGGCCA 1 cut(s) 885
MscI TGGCCA 1 cut(s) 885
MseI TTAA 8 cut(s) 12, 17, 221, 282, 471, 578, 720, 869
Msp20I TGGCCA 1 cut(s) 885
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 1 cut(s) 1059
MspR9I CCNGG 3 cut(s) 789, 948, 1060
MunI CAATTG 1 cut(s) 641
MvaI CCWGG 2 cut(s) 789, 948
MwoI GCNNNNNNNGC 2 cut(s) 212, 710
NarI GGCGCC 1 cut(s) 741
NciI CCSGG 1 cut(s) 1060
NdeII GATC 2 cut(s) 784, 1016
NlaIII CATG 5 cut(s) 142, 299, 469, 599, 1117
NlaIV GGNNCC 2 cut(s) 325, 742
NspI RCATGY 1 cut(s) 469
NspV TTCGAA 2 cut(s) 65, 1005
PceI AGGCCT 1 cut(s) 160
PfeI GAWTC 2 cut(s) 346, 476
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 2 cut(s) 185, 1104
PluTI GGCGCC 1 cut(s) 744
Ppu21I YACGTR 1 cut(s) 1095
Psp6I CCWGG 2 cut(s) 787, 946
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 2 cut(s) 787, 946
PspN4I GGNNCC 2 cut(s) 325, 742
PspPI GGNCC 2 cut(s) 292, 1061
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 5 cut(s) 267, 309, 754, 874, 1097
RsaNI GTAC 5 cut(s) 266, 308, 753, 873, 1096
SaqAI TTAA 8 cut(s) 12, 17, 221, 282, 471, 578, 720, 869
SatI GCNGC 2 cut(s) 184, 1103
Sau3AI GATC 2 cut(s) 784, 1016
Sau96I GGNCC 2 cut(s) 292, 1061
ScaI AGTACT 2 cut(s) 267, 754
ScrFI CCNGG 3 cut(s) 789, 948, 1060
SduI GDGCHC 1 cut(s) 813
SfaNI GCATC 4 cut(s) 90, 555, 600, 1045
SfoI GGCGCC 1 cut(s) 742
SfuI TTCGAA 2 cut(s) 65, 1005
SinI GGWCC 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
SnaBI TACGTA 1 cut(s) 1095
SpeI ACTAGT 1 cut(s) 749
Sse9I AATT 8 cut(s) 29, 187, 480, 538, 579, 641, 938, 973
SseBI AGGCCT 1 cut(s) 160
SspDI GGCGCC 1 cut(s) 740
SspMI CTAG 5 cut(s) 527, 750, 756, 819, 1065
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 3 cut(s) 787, 946, 1058
StyI CCWWGG 3 cut(s) 96, 172, 614
TaaI ACNGT 2 cut(s) 340, 1011
TaiI ACGT 2 cut(s) 687, 1097
TaqI TCGA 5 cut(s) 49, 65, 487, 1005, 1015
TasI AATT 8 cut(s) 29, 187, 480, 538, 579, 641, 938, 973
TatI WGTACW 4 cut(s) 265, 307, 752, 872
TfiI GAWTC 2 cut(s) 346, 476
Tru1I TTAA 8 cut(s) 12, 17, 221, 282, 471, 578, 720, 869
Tru9I TTAA 8 cut(s) 12, 17, 221, 282, 471, 578, 720, 869
TscAI CASTG 5 cut(s) 46, 540, 595, 742, 766
TseI GCWGC 2 cut(s) 183, 1102
TspDTI ATGAA 4 cut(s) 561, 612, 974, 1041
TspGWI ACGGA 2 cut(s) 85, 401
TspRI CASTG 5 cut(s) 46, 540, 595, 742, 766
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 973
XceI RCATGY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 5 cut(s) 527, 750, 756, 819, 1065
ZrmI AGTACT 2 cut(s) 267, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.