Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012727

Physical Location & Seq

Genomic Coordinates Forward (+)

21251934 .. 21254106

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGTTCAAGCTCTCAAACGGTTCAGGATCTGACTCATCAAGTAATGGTATTGCAAGCCCAACTTACAGAACTCCATAGGAGACTGAGCTTATGGAGTGACCCAGATAAGGTTGACAATCTTGAACAGCTTCGGCAGATGGAAGACATACTTAAGGAATCAATCAACCGAACACGCCTGCATAAGGAAAATTTGGGAAAACACCAACTGACATCACTAGATTGCACAAACCAGTTTCAAAATGGAATGCCTTCGTCTTTCTTAGTTGGTGGTTCACAAGAAGCTCAACATATAACTTGGCTTTTCAATGGCGACAATCAGCACATGATATTACCGAATGAGCAGAACTATCTGCCACATAGAGGTGTGGAGTGCTCAACAAATTCCACAGTTCCACAGTATACTAATTACTTTGGCACTGGGACTAGCACTAGCTCTAGCACCGGAAAACAATCTGAGGCCGGTGATCCATTACAGCTAGATACTATGGGACAAATTTCTAATATGGAAGGGGGCGGTGGCTTCAATGAGTTTGACATTAATGCTTGTTTAAGTACGGAATCTGGTGAGCATTATGCGTATCCAACATATTGTAGTTCTAATGTGCCAGACGATAAGAAAGTGAAGCCGGAGAATGAAATGAACATACCAGCAAATCCAGTGGATTATCAACTAAGTAGCAACTTTGAACTGCCAAGATCTTTGTATGAAAATGATCATCATGCTTGGCTTTCTTCGCCTGGCCCTAGCGGCATTGCTGTGTACAAGGAGAATACCTACCAGCCGCAACCAAACGTGAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

269

Amino Acids

30.03

Weight (kDa)

4.96

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012727)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780
malus_domestica	MD06G1194900.v1.1 MD14G1201900.v1.1
pyrus_communis	pycom06g17240 pycom14g16720
rosa_chinensis	RchiOBHm_Chr7g0181601
rosa_laevigata	RLG00000005180
rosa_roxburghii	Rroxscaffold_3G00271860
rosa_rugosa	Rorug06G0442400
rosa_samantha	Rh7AG044800 Rh7BG043800 Rh7CG045500 Rh7DG044400
rosa_wichuraiana	Rw7G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	401
AciI	CCGC	3 cut(s)	516, 750, 785
AclWI	GGATC	2 cut(s)	36, 461
AcsI	RAATTY	3 cut(s)	190, 382, 495
AfaI	GTAC	2 cut(s)	556, 764
AfiI	CCNNNNNNNGG	3 cut(s)	109, 184, 362
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	6 cut(s)	9, 125, 239, 307, 526, 689
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	6 cut(s)	12, 90, 130, 284, 435, 478
AluI	AGCT	6 cut(s)	12, 90, 130, 284, 435, 478
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	36, 461
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	2 cut(s)	459, 742
ApoI	RAATTY	3 cut(s)	190, 382, 495
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	2 cut(s)	129, 250
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	2 cut(s)	476, 578
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	377
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	741
BciVI	GTATCC	1 cut(s)	591
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	6 cut(s)	218, 426, 432, 438, 479, 747
BfrI	CTTAAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	591
BglI	GCCNNNNNGGC	1 cut(s)	750
BglII	AGATCT	1 cut(s)	698
BisI	GCNGC	2 cut(s)	751, 785
BlsI	GCNGC	2 cut(s)	752, 786
Bme1390I	CCNGG	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	743
BmrFI	CCNGG	1 cut(s)	741
BmrI	ACTGGG	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 184, 362
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	3 cut(s)	232, 424, 659
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	109, 184, 362
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	77, 447
BseNI	ACTGG	3 cut(s)	232, 424, 659
BshFI	GGCC	2 cut(s)	461, 744
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	444, 462, 629
BslFI	GGGAC	2 cut(s)	436, 504
BslI	CCNNNNNNNGG	3 cut(s)	109, 184, 362
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	436, 504
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	461, 744
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	4 cut(s)	28, 466, 698, 715
BspACI	CCGC	3 cut(s)	516, 750, 785
BspANI	GGCC	2 cut(s)	461, 744
BspCNI	CTCAG	2 cut(s)	78, 448
BspPI	GGATC	2 cut(s)	36, 461
BspTI	CTTAAG	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	3 cut(s)	232, 424, 659
BssAI	RCCGGY	1 cut(s)	461
BssMI	GATC	4 cut(s)	28, 466, 698, 715
BssNAI	GTATAC	1 cut(s)	402
Bst1107I	GTATAC	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	22, 391, 399
BstAFI	CTTAAG	1 cut(s)	152
BstAUI	TGTACA	1 cut(s)	762
BstC8I	GCNNGC	2 cut(s)	57, 179
BstDEI	CTNAG	4 cut(s)	86, 262, 456, 674
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstKTI	GATC	4 cut(s)	31, 469, 701, 718
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	4 cut(s)	28, 466, 698, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	736, 750
BstNI	CCWGG	1 cut(s)	741
BstSCI	CCNGG	1 cut(s)	739
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	28, 698
BstYI	RGATCY	2 cut(s)	28, 698
BstZ17I	GTATAC	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	461, 744
BtsIMutI	CAGTG	2 cut(s)	417, 666
Cac8I	GCNNGC	2 cut(s)	57, 179
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	2 cut(s)	555, 763
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	2 cut(s)	325, 722
CviQI	GTAC	2 cut(s)	555, 763
DdeI	CTNAG	4 cut(s)	86, 262, 456, 674
DpnI	GATC	4 cut(s)	30, 468, 700, 717
DpnII	GATC	4 cut(s)	28, 466, 698, 715
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	739
FaeI	CATG	2 cut(s)	328, 725
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 135, 167
FaqI	GGGAC	2 cut(s)	436, 504
FatI	CATG	2 cut(s)	324, 721
FbaI	TGATCA	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	751, 785
Fsp4HI	GCNGC	2 cut(s)	751, 785
FspBI	CTAG	6 cut(s)	218, 426, 432, 438, 479, 747
GluI	GCNGC	2 cut(s)	751, 785
HaeIII	GGCC	2 cut(s)	461, 744
HapII	CCGG	3 cut(s)	444, 462, 629
Hin1II	CATG	2 cut(s)	328, 725
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	34, 158, 560
HpaII	CCGG	3 cut(s)	444, 462, 629
HphI	GGTGA	2 cut(s)	476, 578
Hpy166II	GTNNAC	4 cut(s)	115, 275, 402, 763
Hpy188I	TCNGA	2 cut(s)	33, 457
Hpy188III	TCNNGA	2 cut(s)	26, 122
Hpy8I	GTNNAC	4 cut(s)	115, 275, 402, 763
HpyAV	CCTTC	2 cut(s)	261, 503
HpyCH4III	ACNGT	3 cut(s)	22, 391, 399
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	3 cut(s)	55, 181, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	736, 750
HpyF3I	CTNAG	4 cut(s)	86, 262, 456, 674
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	2 cut(s)	328, 725
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	28, 466, 698, 715
MaeI	CTAG	6 cut(s)	218, 426, 432, 438, 479, 747
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	4 cut(s)	30, 468, 700, 717
MboI	GATC	4 cut(s)	28, 466, 698, 715
MboII	GAAGA	2 cut(s)	155, 726
MflI	RGATCY	2 cut(s)	28, 698
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	4 cut(s)	190, 382, 406, 495
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	2 cut(s)	356, 451
MroXI	GAANNNNTTC	2 cut(s)	129, 250
MseI	TTAA	3 cut(s)	153, 540, 551
MslI	CAYNNNNRTG	2 cut(s)	363, 758
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	3 cut(s)	444, 462, 629
MspR9I	CCNGG	1 cut(s)	741
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	2 cut(s)	736, 750
NdeII	GATC	4 cut(s)	28, 466, 698, 715
NlaIII	CATG	2 cut(s)	328, 725
NmuCI	GTSAC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	129, 250
PfeI	GAWTC	2 cut(s)	158, 560
PkrI	GCNGC	2 cut(s)	752, 786
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	743
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	28, 698
RsaI	GTAC	2 cut(s)	556, 764
RsaNI	GTAC	2 cut(s)	555, 763
RseI	CAYNNNNRTG	2 cut(s)	363, 758
SaqAI	TTAA	3 cut(s)	153, 540, 551
SatI	GCNGC	2 cut(s)	751, 785
Sau3AI	GATC	4 cut(s)	28, 466, 698, 715
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	363, 758
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	190, 382, 406, 495
SsiI	CCGC	3 cut(s)	516, 750, 785
SspMI	CTAG	6 cut(s)	218, 426, 432, 438, 479, 747
StyD4I	CCNGG	1 cut(s)	739
TaaI	ACNGT	3 cut(s)	22, 391, 399
TaiI	ACGT	1 cut(s)	798
TasI	AATT	4 cut(s)	190, 382, 406, 495
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	2 cut(s)	753, 787
TfiI	GAWTC	2 cut(s)	158, 560
Tru1I	TTAA	3 cut(s)	153, 540, 551
Tru9I	TTAA	3 cut(s)	153, 540, 551
TscAI	CASTG	2 cut(s)	424, 666
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	651, 656, 723
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	2 cut(s)	424, 666
Vha464I	CTTAAG	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	540
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	3 cut(s)	190, 382, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	401
XmnI	GAANNNNTTC	2 cut(s)	129, 250
XspI	CTAG	6 cut(s)	218, 426, 432, 438, 479, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.