Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012727

Physical Location & Seq

Genomic Coordinates Forward (+)

2764036 .. 2766685

Gene Structure 2650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG043800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGGCTGGAACCGGAGTTTGATTATTATTCTTTCCATATAGTACTGAAGAAAACTTTTAAGAAGTTGGACCACGATGTAAATGTACAAGAGTTTGTGGGTTCCAGCACTCAGACAGTTGAGGATCTGACAAATCAAGCAAGGGCATTGCAATCCCAACTTACAGAACTGCATAAGAGACTGAGCTTTTGGAGTAATCCAGAGAAGGTTGATGATGTAGAACAGCTAAGGCAGATGGAAGACATGCTTAAGGAATCAATTAGTCGAACACGTCTGCACAAGGAAAACTTTGAAAAACATCAACTAGCTTCACTGAATTGCACAGGCCAGTTTCAAAATGGGATGCCTTCATCTTTAATTGTGGGCAGTGTGCAAGAAACTCAACCTATGCCTTGGATTTTGAATAATGACAATCAACATTTGATATTACCCAACGAGGCTTCCTTTCTGCCTCATAGAGATGTGGACTGCTCTACAAATGCCTCGGTAGCACGATTTAATAGTTACTTTGGCAATGGTGCCAGCACTAGTACTAGCACTGGTAAACAATCTGAGGTTGGTGATCCAGGACAACTTGATAATATGGGGCAAATTCCTAGTATGGAAGGAGGTTGTGGCTTGAATGAGTATGACATAAATGCTTGTTTAAGTACAGAACTTGGCCAGCAGTATGCGTATCCATCATATTGCAATCCTCATGTGCCAGACGATAAAAAATTGAAGCCTGGTTTGGAAATGAACTTGCCTACAAATTCGGTGGATTATCAAGCAAGTAGCAACTTCGAGCTGCCTCGATCTTTGTATGGTGATGAGCATCCTTCTTGGCTTTCATCTTCCGGGCCTAGCACCATTGCTGTATATGACCAAAATACGTACGAGCAGCAACCAAACATGAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

300

Amino Acids

33.84

Weight (kDa)

4.9

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012727)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780 FvH4_5g14780
malus_domestica	MD06G1194900.v1.1 MD14G1201900.v1.1
pyrus_communis	pycom06g17240 pycom14g16720
rosa_chinensis	RchiOBHm_Chr7g0181601
rosa_laevigata	RLG00000005180
rosa_roxburghii	Rroxscaffold_3G00271860
rosa_rugosa	Rorug06G0442400
rosa_samantha	Rh7AG044800 Rh7BG043800 Rh7CG045500 Rh7DG044400
rosa_wichuraiana	Rw7G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	518
AclWI	GGATC	2 cut(s)	132, 557
AcoI	YGGCCR	1 cut(s)	661
AcsI	RAATTY	2 cut(s)	591, 751
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	5 cut(s)	45, 87, 532, 652, 875
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	5 cut(s)	293, 335, 403, 622, 721
AhlI	ACTAGT	1 cut(s)	527
AjiI	CACGTC	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	565, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AluBI	AGCT	4 cut(s)	186, 226, 308, 787
AluI	AGCT	4 cut(s)	186, 226, 308, 787
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	132, 557
AoxI	GGCC	3 cut(s)	325, 661, 839
ApeKI	GCWGC	2 cut(s)	787, 880
ApoI	RAATTY	2 cut(s)	591, 751
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AspS9I	GGNCC	2 cut(s)	70, 839
AsuC2I	CCSGG	1 cut(s)	838
AsuHPI	GGTGA	2 cut(s)	572, 818
AvaII	GGWCC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	663
BanI	GGYRCC	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	774, 892
BccI	CCATC	2 cut(s)	229, 688
BciT130I	CCWGG	2 cut(s)	567, 726
BciVI	GTATCC	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	838
BcoDI	GTCTC	1 cut(s)	172
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	5 cut(s)	305, 528, 534, 597, 843
BfrI	CTTAAG	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	2 cut(s)	788, 881
BlsI	GCNGC	2 cut(s)	789, 882
BmcAI	AGTACT	2 cut(s)	45, 532
Bme1390I	CCNGG	3 cut(s)	567, 726, 838
Bme18I	GGWCC	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	70, 839
BmiI	GGNNCC	3 cut(s)	12, 103, 520
BmrFI	CCNGG	3 cut(s)	567, 726, 838
BmsI	GCATC	2 cut(s)	333, 823
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	838
BsaAI	YACGTR	1 cut(s)	873
BsaBI	GATNNNNATC	1 cut(s)	813
BsaJI	CCNNGG	2 cut(s)	392, 483
BsaWI	WCCGGW	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	328, 544
Bse3DI	GCAATG	3 cut(s)	146, 520, 849
Bse8I	GATNNNNATC	1 cut(s)	813
BseBI	CCWGG	2 cut(s)	567, 726
BseDI	CCNNGG	2 cut(s)	392, 483
BseGI	GGATG	2 cut(s)	348, 814
BseJI	GATNNNNATC	1 cut(s)	813
BseMI	GCAATG	3 cut(s)	146, 520, 849
BseMII	CTCAG	3 cut(s)	125, 173, 543
BseNI	ACTGG	2 cut(s)	328, 544
BseXI	GCAGC	2 cut(s)	774, 892
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	327, 663, 841
BshNI	GGYRCC	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	14, 837
BsiWI	CGTACG	1 cut(s)	873
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	327, 663, 841
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	124, 562, 794
BspANI	GGCC	3 cut(s)	327, 663, 841
BspCNI	CTCAG	3 cut(s)	124, 174, 544
BspLI	GGNNCC	3 cut(s)	12, 103, 520
BspPI	GGATC	2 cut(s)	132, 557
BspT107I	GGYRCC	1 cut(s)	518
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	3 cut(s)	146, 520, 849
BsrGI	TGTACA	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	328, 544
BssECI	CCNNGG	2 cut(s)	392, 483
BssMI	GATC	3 cut(s)	124, 562, 794
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	567, 726
Bst4CI	ACNGT	1 cut(s)	118
BstAFI	CTTAAG	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	873
BstC8I	GCNNGC	2 cut(s)	523, 665
BstDEI	CTNAG	4 cut(s)	111, 182, 227, 552
BstF5I	GGATG	2 cut(s)	348, 814
BstKTI	GATC	3 cut(s)	127, 565, 797
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	3 cut(s)	124, 562, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	2 cut(s)	567, 726
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	3 cut(s)	565, 724, 836
BstSNI	TACGTA	1 cut(s)	873
BstV1I	GCAGC	2 cut(s)	774, 892
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	3 cut(s)	327, 663, 841
BtrI	CACGTC	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	348, 814
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	3 cut(s)	311, 373, 537
Cac8I	GCNNGC	2 cut(s)	523, 665
Cfr13I	GGNCC	2 cut(s)	70, 839
Csp6I	GTAC	5 cut(s)	44, 86, 531, 651, 874
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviAII	CATG	3 cut(s)	244, 698, 892
CviQI	GTAC	5 cut(s)	44, 86, 531, 651, 874
DdeI	CTNAG	4 cut(s)	111, 182, 227, 552
DpnI	GATC	3 cut(s)	126, 564, 796
DpnII	GATC	3 cut(s)	124, 562, 794
EaeI	YGGCCR	1 cut(s)	661
Eco105I	TACGTA	1 cut(s)	873
Eco130I	CCWWGG	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	565, 724
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	3 cut(s)	247, 701, 895
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 272, 304
FatI	CATG	3 cut(s)	243, 697, 891
Fnu4HI	GCNGC	2 cut(s)	788, 881
FokI	GGATG	2 cut(s)	355, 801
Fsp4HI	GCNGC	2 cut(s)	788, 881
FspBI	CTAG	5 cut(s)	305, 528, 534, 597, 843
GluI	GCNGC	2 cut(s)	788, 881
HaeIII	GGCC	3 cut(s)	327, 663, 841
HapII	CCGG	2 cut(s)	14, 837
Hin1II	CATG	3 cut(s)	247, 701, 895
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	14, 837
HphI	GGTGA	2 cut(s)	572, 818
Hpy166II	GTNNAC	2 cut(s)	466, 545
Hpy188I	TCNGA	3 cut(s)	114, 129, 553
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	466, 545
HpyAV	CCTTC	4 cut(s)	199, 357, 599, 828
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	2 cut(s)	271, 872
HpyCH4V	TGCA	6 cut(s)	151, 172, 277, 321, 373, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	4 cut(s)	111, 182, 227, 552
HpySE526I	ACGT	2 cut(s)	271, 872
Hsp92II	CATG	3 cut(s)	247, 701, 895
Kzo9I	GATC	3 cut(s)	124, 562, 794
Lsp1109I	GCAGC	2 cut(s)	774, 892
LweI	GCATC	2 cut(s)	333, 823
MaeI	CTAG	5 cut(s)	305, 528, 534, 597, 843
MaeII	ACGT	2 cut(s)	271, 872
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	3 cut(s)	126, 564, 796
MboI	GATC	3 cut(s)	124, 562, 794
MboII	GAAGA	3 cut(s)	61, 251, 825
MflI	RGATCY	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	6 cut(s)	258, 316, 357, 591, 716, 751
MluNI	TGGCCA	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	8 cut(s)	115, 430, 462, 493, 547, 602, 705, 801
Mox20I	TGGCCA	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	5 cut(s)	60, 249, 356, 498, 647
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	663
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	2 cut(s)	14, 837
MspR9I	CCNGG	3 cut(s)	567, 726, 838
MvaI	CCWGG	2 cut(s)	567, 726
MwoI	GCNNNNNNNGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	838
NdeII	GATC	3 cut(s)	124, 562, 794
NlaIII	CATG	3 cut(s)	247, 701, 895
NlaIV	GGNNCC	3 cut(s)	12, 103, 520
NspI	RCATGY	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	254
Pfl23II	CGTACG	1 cut(s)	873
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	789, 882
Ppu21I	YACGTR	1 cut(s)	873
Psp6I	CCWGG	2 cut(s)	565, 724
PspGI	CCWGG	2 cut(s)	565, 724
PspLI	CGTACG	1 cut(s)	873
PspN4I	GGNNCC	3 cut(s)	12, 103, 520
PspPI	GGNCC	2 cut(s)	70, 839
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	5 cut(s)	45, 87, 532, 652, 875
RsaNI	GTAC	5 cut(s)	44, 86, 531, 651, 874
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	5 cut(s)	60, 249, 356, 498, 647
SatI	GCNGC	2 cut(s)	788, 881
Sau3AI	GATC	3 cut(s)	124, 562, 794
Sau96I	GGNCC	2 cut(s)	70, 839
ScaI	AGTACT	2 cut(s)	45, 532
ScrFI	CCNGG	3 cut(s)	567, 726, 838
SfaNI	GCATC	2 cut(s)	333, 823
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	873
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	6 cut(s)	258, 316, 357, 591, 716, 751
SspMI	CTAG	5 cut(s)	305, 528, 534, 597, 843
StyD4I	CCNGG	3 cut(s)	565, 724, 836
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	2 cut(s)	274, 875
TaqI	TCGA	3 cut(s)	265, 783, 793
TasI	AATT	6 cut(s)	258, 316, 357, 591, 716, 751
TatI	WGTACW	4 cut(s)	43, 85, 530, 650
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	5 cut(s)	60, 249, 356, 498, 647
Tru9I	TTAA	5 cut(s)	60, 249, 356, 498, 647
TscAI	CASTG	3 cut(s)	318, 373, 544
TseI	GCWGC	2 cut(s)	787, 880
TspDTI	ATGAA	3 cut(s)	339, 752, 819
TspRI	CASTG	3 cut(s)	318, 373, 544
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	591, 751
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XspI	CTAG	5 cut(s)	305, 528, 534, 597, 843
ZrmI	AGTACT	2 cut(s)	45, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.