FvH4_5g16320

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015351
Physical Location & Seq
Forward (+)
9293000 .. 9296063
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16320.t1

Sequence Viewer

Length: 1470 bp
ATGTACACTCTCCTCCGCACAGCTCCATCACAGAAACACCCAAAACCCACTTTCTCAATTCCATCTCATCACAACCTAACCACTTCACCGCCATCACAACCGCCTCAAGACGCCGCCTTTGCCGCCCTTATTCTCAAATCCGACCCGCAATCCCTAACCCGGATCCTCCACGACCCGAACATCCACTGGACCCCCGACTCCGTCAACAAAACCCTCAAGCGCCTCTGGAACCATGGCCCCAAAGCCCTCCTCTTCTTCAAAACCCTCGACCGCCACCCCACCTACACCCACTCCTCCTCCTCCTACGACCACGCCGTCGACATCGCCGGCCGCTTGCGCGACTACAAGTCCCTCTGGGCCTTCGTCGCCCGAATGCGCGCCCTCCGGGTCGGCCCGGCTCCGAGAACCTTCGCCATCATCGCCGAGAGGTACGTCGCCGCCGGGAAACCCGATAGAGCTGTCAAGGTGTTTCTTTCGATGCATGAACATGGCTGCCCTCAGGATTTGAATTCTTTCAATACTGTTCTTGATGTGCTTTGTAAAGCTAAGCGTGTCGAAAAGGCTTACAATTTGTTTAAGGTGTTTAGGGGGAGGTTTAGAGCTGATTGTGTTAGTTATAATGTGATTGTTAATGGGTGGTGTTTGATTAAGAGGACTCCCAAGGCGTTAGAGGTTTTGAGGGAGATGGTGGAGAGAGGAATCGAGCCGAGTTTGGTTACTTATAACATAATGCTTAAAGGGTATCTTAGAGCTGGACAGGTTAAGGAGGCTTGGGAATTCTTTAGGGAGATGAAGAGGAGGAAATGTGAGATTGATGTTGTTACTTATACCACTCTGGTTCATGGGTTTGGTGTTTTGGGGGAGATTAAGAAGGTGAGGAAGATATTTGATGGGATGGTTGAGGAGGGGGTGCTTCCTTCGGTTGCGACTTACAATGCGCTGATTCAGGTTTTGTGTAAGAAGGATAGCGTGGAGAATGCGGTGGTGGTTTTTGAGGAGATGGTGAGTAAGGGTTACGTGCCTAATGTGACGACTTATAATGTGTTGGTTAGAGGGCTGTGTCATGCTGGTAATATGGACAGCGGGATGGAGTTGATGGAGAGGATGAAGGATGATGATTGTGAGCCGAATGTTCAGACGTATAATGTTGTGATTCGTTACTTTTGTGATGATGGGCAGATTGATAAGGCGTTGGATGTGTTTGAGAAGATGGGTAAGGGAGAGTGCTTGCCTAATTTGGATACATACAATGTGTTGATAAGTGCCATGTTTGTGAGGAAGAAACCCGAAGATTTGTTAGTGGCAGGGAAGTTGCTAATTGAGATGGTTGATAGAGGATTTTTGCCCCGGAAATACACCTTTAATAAGGTTCTGGACGGGCTTTTGTTAACTGGTAATCAAGGTTTTGCAAAAGAGATTCTCAGATCGCAGAGCAGATGTGGCCGTCTTCCCCGTCAGGTCAGATTATAA

Protein Analysis

490

Amino Acids

55.62

Weight (kDa)

9.38

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 199 - 248 3.2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 202 - 249 5.2e-13 PPR repeat family
TPR_24 PF23276 222 - 331 1.9e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 232 - 265 1.5e-10 PPR repeat
PPR_2 PF13041 236 - 283 1.5e-19 PPR repeat family
PPR PF01535 239 - 269 8.9e-10 PPR repeat
TPR_24 PF23276 250 - 365 2.7e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 261 - 318 3.9e-13 Pentatricopeptide repeat domain
PPR_long PF17177 294 - 419 9.3e-14 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 303 - 335 4.8e-09 PPR repeat
PPR_2 PF13041 306 - 355 1.4e-17 PPR repeat family
PPR PF01535 310 - 338 6.7e-07 PPR repeat
TPR_24 PF23276 310 - 403 4e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 330 - 388 6.6e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 337 - 370 8.6e-10 PPR repeat
PPR_2 PF13041 341 - 389 1.1e-14 PPR repeat family
PPR PF01535 345 - 374 8e-07 PPR repeat
PPR_1 PF12854 373 - 404 2.2e-09 PPR repeat
PPR_2 PF13041 376 - 423 2.9e-15 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74900
fragaria_vesca FvH4_5g16320
malus_domestica MD06G1181800.v1.1 MD14G1187700.v1.1
prunus_persica Prupe.5G180100_v2.0.a1
pyrus_communis pycom06g16080 pycom14g15560
rosa_chinensis RchiOBHm_Chr7g0179811
rosa_laevigata RLG00000005322
rosa_multiflora Rmu_sc0001754.1_g000006 Rmu_sc0004156.1_g000009
rosa_roxburghii Rroxscaffold_3G00273450
rosa_rugosa Rorug06G0428500
rosa_samantha Rh7CG029100 Rh7DG028600
rosa_wichuraiana Rw7G002250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 618, 723, 1038, 1468
AasI GACNNNNNNGTC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 318
AccII CGCG 2 cut(s) 339, 378
AclWI GGATC 2 cut(s) 157, 170
AcoI YGGCCR 2 cut(s) 328, 1441
AcsI RAATTY 2 cut(s) 508, 776
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 2 cut(s) 5, 431
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 3 cut(s) 259, 508, 517
AhdI GACNNNNNGTC 1 cut(s) 346
AluBI AGCT 5 cut(s) 23, 458, 545, 602, 752
AluI AGCT 5 cut(s) 23, 458, 545, 602, 752
AlwI GGATC 2 cut(s) 157, 170
AoxI GGCC 5 cut(s) 235, 328, 357, 391, 1441
ApeKI GCWGC 1 cut(s) 492
ApoI RAATTY 2 cut(s) 508, 776
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
Asp700I GAANNNNTTC 1 cut(s) 512
AspLEI GCGC 5 cut(s) 222, 339, 378, 380, 940
AspS9I GGNCC 4 cut(s) 189, 236, 357, 392
AsuC2I CCSGG 5 cut(s) 160, 386, 395, 442, 1348
AsuHPI GGTGA 3 cut(s) 78, 886, 1015
AvaII GGWCC 1 cut(s) 189
AxyI CCTNAGG 1 cut(s) 498
BamHI GGATCC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 1439
BbvI GCAGC 1 cut(s) 479
BceAI ACGGC 2 cut(s) 299, 1428
BciVI GTATCC 1 cut(s) 1234
BcnI CCSGG 5 cut(s) 160, 386, 395, 442, 1348
BfoI RGCGCY 1 cut(s) 223
BfuI GTATCC 1 cut(s) 1234
BisI GCNGC 5 cut(s) 114, 123, 331, 438, 493
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 5 cut(s) 115, 124, 332, 439, 494
Bme1390I CCNGG 5 cut(s) 160, 386, 395, 442, 1348
Bme18I GGWCC 1 cut(s) 189
BmeRI GACNNNNNGTC 1 cut(s) 346
BmgT120I GGNCC 4 cut(s) 189, 236, 357, 392
BmiI GGNNCC 5 cut(s) 164, 191, 230, 238, 399
BmrFI CCNGG 5 cut(s) 160, 386, 395, 442, 1348
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 1439
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 2 cut(s) 90, 200
BpuMI CCSGG 5 cut(s) 160, 386, 395, 442, 1348
BsaAI YACGTR 1 cut(s) 1018
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 232, 660, 1346
BsaXI ACNNNNNCTCC 6 cut(s) 275, 281, 305, 311, 790, 820
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 191, 1396
Bse21I CCTNAGG 1 cut(s) 498
BseDI CCNNGG 3 cut(s) 232, 660, 1346
BseGI GGATG 6 cut(s) 180, 900, 1092, 1110, 1117, 1201
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 512, 1435
BseNI ACTGG 2 cut(s) 191, 1396
BsePI GCGCGC 1 cut(s) 376
BseRI GAGGAG 7 cut(s) 239, 283, 286, 289, 811, 917, 1010
BseX3I CGGCCG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 479
Bsh1236I CGCG 2 cut(s) 339, 378
Bsh1285I CGRYCG 2 cut(s) 271, 331
BshFI GGCC 5 cut(s) 237, 330, 359, 393, 1443
BsiEI CGRYCG 2 cut(s) 271, 331
BsiSI CCGG 6 cut(s) 160, 327, 385, 395, 441, 1348
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 334
BsmI GAATGC 2 cut(s) 378, 982
BsnI GGCC 5 cut(s) 237, 330, 359, 393, 1443
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 162, 1424
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 1 cut(s) 232
BspANI GGCC 5 cut(s) 237, 330, 359, 393, 1443
BspCNI CTCAG 2 cut(s) 511, 1434
BspFNI CGCG 2 cut(s) 339, 378
BspLI GGNNCC 5 cut(s) 164, 191, 230, 238, 399
BspPI GGATC 2 cut(s) 157, 170
BsrFI RCCGGY 1 cut(s) 326
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 191, 1396
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 232, 660, 1346
BssHII GCGCGC 1 cut(s) 376
BssMI GATC 2 cut(s) 162, 1424
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 2 cut(s) 232, 660
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 2 cut(s) 257, 788
BstACI GRCGYC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 1018
BstC8I GCNNGC 4 cut(s) 328, 335, 378, 1229
BstDEI CTNAG 4 cut(s) 498, 546, 746, 1421
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 6 cut(s) 180, 900, 1092, 1110, 1117, 1201
BstFNI CGCG 2 cut(s) 339, 378
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 5 cut(s) 222, 339, 378, 380, 940
BstKTI GATC 2 cut(s) 165, 1427
BstMBI GATC 2 cut(s) 162, 1424
BstMCI CGRYCG 2 cut(s) 271, 331
BstMWI GCNNNNNNNGC 6 cut(s) 119, 122, 336, 365, 419, 1440
BstSCI CCNGG 5 cut(s) 158, 384, 393, 440, 1346
BstUI CGCG 2 cut(s) 339, 378
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 1439
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BstZI CGGCCG 1 cut(s) 328
Bsu36I CCTNAGG 1 cut(s) 498
BsuI GTATCC 1 cut(s) 1234
BsuRI GGCC 5 cut(s) 237, 330, 359, 393, 1443
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 2 cut(s) 307, 403
BtsCI GGATG 6 cut(s) 180, 900, 1092, 1110, 1117, 1201
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 4 cut(s) 328, 335, 378, 1229
CfoI GCGC 5 cut(s) 222, 339, 378, 380, 940
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 4 cut(s) 189, 236, 357, 392
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 4, 430
CviAII CATG 6 cut(s) 233, 482, 488, 842, 1064, 1267
CviQI GTAC 2 cut(s) 4, 430
DdeI CTNAG 4 cut(s) 498, 546, 746, 1421
DpnI GATC 2 cut(s) 164, 1426
DpnII GATC 2 cut(s) 162, 1424
DrdI GACNNNNNNGTC 1 cut(s) 314
DriI GACNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 314
EaeI YGGCCR 2 cut(s) 328, 1441
EagI CGGCCG 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 257, 788
Eam1105I GACNNNNNGTC 1 cut(s) 346
EarI CTCTTC 2 cut(s) 257, 788
EclXI CGGCCG 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 232, 660
Eco47I GGWCC 1 cut(s) 189
Eco52I CGGCCG 1 cut(s) 328
Eco81I CCTNAGG 1 cut(s) 498
EcoRI GAATTC 2 cut(s) 508, 776
EcoT14I CCWWGG 2 cut(s) 232, 660
EcoT22I ATGCAT 1 cut(s) 483
ErhI CCWWGG 2 cut(s) 232, 660
FaeI CATG 6 cut(s) 236, 485, 491, 845, 1067, 1270
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 1 cut(s) 334
FatI CATG 6 cut(s) 232, 481, 487, 841, 1063, 1266
FauI CCCGC 2 cut(s) 153, 1076
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 5 cut(s) 114, 123, 331, 438, 493
FokI GGATG 6 cut(s) 167, 907, 1099, 1117, 1124, 1208
Fsp4HI GCNGC 5 cut(s) 114, 123, 331, 438, 493
GlaI GCGC 5 cut(s) 221, 338, 377, 379, 939
GluI GCNGC 5 cut(s) 114, 123, 331, 438, 493
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 5 cut(s) 237, 330, 359, 393, 1443
HapII CCGG 6 cut(s) 160, 327, 385, 395, 441, 1348
HgaI GACGC 1 cut(s) 119
HhaI GCGC 5 cut(s) 222, 339, 378, 380, 940
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 6 cut(s) 236, 485, 491, 845, 1067, 1270
Hin6I GCGC 5 cut(s) 220, 337, 376, 378, 938
HinP1I GCGC 5 cut(s) 220, 337, 376, 378, 938
HincII GTYRAC 3 cut(s) 205, 319, 1389
HindII GTYRAC 3 cut(s) 205, 319, 1389
HinfI GANTC 6 cut(s) 197, 655, 699, 943, 1153, 1417
HpaI GTTAAC 1 cut(s) 1389
HpaII CCGG 6 cut(s) 160, 327, 385, 395, 441, 1348
HphI GGTGA 3 cut(s) 78, 886, 1015
Hpy166II GTNNAC 4 cut(s) 6, 205, 319, 1389
Hpy188I TCNGA 5 cut(s) 142, 402, 1137, 1424, 1463
Hpy188III TCNNGA 5 cut(s) 107, 226, 500, 527, 1373
Hpy8I GTNNAC 4 cut(s) 6, 205, 319, 1389
Hpy99I CGWCG 3 cut(s) 320, 368, 437
HpyAV CCTTC 6 cut(s) 370, 418, 865, 927, 955, 1102
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 3 cut(s) 432, 1017, 1139
HpyCH4V TGCA 2 cut(s) 481, 1409
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 122, 336, 365, 419, 1440
HpyF3I CTNAG 4 cut(s) 498, 546, 746, 1421
HpySE526I ACGT 3 cut(s) 432, 1017, 1139
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 6 cut(s) 236, 485, 491, 845, 1067, 1270
HspAI GCGC 5 cut(s) 220, 337, 376, 378, 938
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
KspAI GTTAAC 1 cut(s) 1389
Kzo9I GATC 2 cut(s) 162, 1424
LmnI GCTCC 2 cut(s) 28, 403
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 1 cut(s) 468
MaeII ACGT 3 cut(s) 432, 1017, 1139
MaeIII GTNAC 5 cut(s) 715, 820, 1013, 1027, 1157
MalI GATC 2 cut(s) 164, 1426
MboI GATC 2 cut(s) 162, 1424
MboII GAAGA 8 cut(s) 244, 247, 805, 892, 1219, 1291, 1301, 1439
MflI RGATCY 1 cut(s) 162
MluCI AATT 6 cut(s) 57, 508, 568, 776, 1234, 1317
MlyI GAGTC 2 cut(s) 191, 649
MmeI TCCRAC 2 cut(s) 165, 1173
Mph1103I ATGCAT 1 cut(s) 483
MroNI GCCGGC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 8 cut(s) 576, 630, 648, 735, 762, 867, 1362, 1388
MslI CAYNNNNRTG 2 cut(s) 486, 1271
MspA1I CMGCKG 1 cut(s) 1083
MspI CCGG 6 cut(s) 160, 327, 385, 395, 441, 1348
MspR9I CCNGG 5 cut(s) 160, 386, 395, 442, 1348
Mva1269I GAATGC 2 cut(s) 378, 982
MvnI CGCG 2 cut(s) 339, 378
MwoI GCNNNNNNNGC 6 cut(s) 119, 122, 336, 365, 419, 1440
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 5 cut(s) 160, 386, 395, 442, 1348
NcoI CCATGG 1 cut(s) 232
NdeII GATC 2 cut(s) 162, 1424
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 6 cut(s) 236, 485, 491, 845, 1067, 1270
NlaIV GGNNCC 5 cut(s) 164, 191, 230, 238, 399
NmeAIII GCCGAG 2 cut(s) 448, 732
NmuCI GTSAC 1 cut(s) 1027
NsiI ATGCAT 1 cut(s) 483
PauI GCGCGC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 2 cut(s) 378, 982
PdiI GCCGGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 4 cut(s) 699, 943, 1153, 1417
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 5 cut(s) 115, 124, 332, 439, 494
PleI GAGTC 2 cut(s) 191, 649
PpsI GAGTC 2 cut(s) 191, 649
Ppu21I YACGTR 1 cut(s) 1018
PsiI TTATAA 4 cut(s) 618, 723, 1038, 1468
PspN4I GGNNCC 5 cut(s) 164, 191, 230, 238, 399
PspPI GGNCC 4 cut(s) 189, 236, 357, 392
PsuI RGATCY 1 cut(s) 162
PsyI GACNNNGTC 1 cut(s) 200
PteI GCGCGC 1 cut(s) 376
RsaI GTAC 2 cut(s) 5, 431
RsaNI GTAC 2 cut(s) 4, 430
RseI CAYNNNNRTG 2 cut(s) 486, 1271
SalI GTCGAC 1 cut(s) 317
SaqAI TTAA 8 cut(s) 576, 630, 648, 735, 762, 867, 1362, 1388
SatI GCNGC 5 cut(s) 114, 123, 331, 438, 493
Sau3AI GATC 2 cut(s) 162, 1424
Sau96I GGNCC 4 cut(s) 189, 236, 357, 392
SchI GAGTC 2 cut(s) 191, 649
ScrFI CCNGG 5 cut(s) 160, 386, 395, 442, 1348
SfaNI GCATC 1 cut(s) 468
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 486, 1271
SmlI CTYRAG 2 cut(s) 105, 215
SmoI CTYRAG 2 cut(s) 105, 215
Sse9I AATT 6 cut(s) 57, 508, 568, 776, 1234, 1317
StyD4I CCNGG 5 cut(s) 158, 384, 393, 440, 1346
StyI CCWWGG 2 cut(s) 232, 660
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 3 cut(s) 435, 1020, 1142
TaqI TCGA 5 cut(s) 267, 318, 476, 555, 702
TasI AATT 6 cut(s) 57, 508, 568, 776, 1234, 1317
TatI WGTACW 1 cut(s) 3
TauI GCSGC 4 cut(s) 116, 125, 333, 440
TfiI GAWTC 4 cut(s) 699, 943, 1153, 1417
Tru1I TTAA 8 cut(s) 576, 630, 648, 735, 762, 867, 1362, 1388
Tru9I TTAA 8 cut(s) 576, 630, 648, 735, 762, 867, 1362, 1388
TscAI CASTG 1 cut(s) 191
TseFI GTSAC 1 cut(s) 1027
TseI GCWGC 1 cut(s) 492
Tsp45I GTSAC 1 cut(s) 1027
TspDTI ATGAA 4 cut(s) 498, 806, 830, 1121
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 1 cut(s) 191
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 2 cut(s) 508, 776
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.