Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015351

Physical Location & Seq

Genomic Coordinates Reverse (-)

15130582 .. 15132048

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGTTCACTCTGCAACTCAAAACTGCGGCACAGAAAAACCCAAAACCCAGTTTTTCAATCCCATGTCGCAGCCTCACCACCTCACCCCCACAACCGCCTCAAGACTCTTACTTGGCCAACCTCATCCTCCAATCCGATCCACAAACCCTAACCCAGATTCTTCACAACCCTAAAATCGAGTGGACTGCAGATTTGGTGGACAAGACCCTGAAACGGCTCTGGAACCATGGGCCTAAAGCCATCCAATTCTTTAAAGTACTTGACCACCACCCCAGCTACACGCACTCTCGCTCGTCCTTCGACCACGCCATCGACATAGCTGGTCGTCTGCGTGACTATAAGGCCCTATGGACCCTCGTTTCCCGGATGCGGGCGCGCCGCCTCGGCCCGGGCCCGAGAACTTTTGCTATCATCACTGAGAGGTATGTTGCTGCTGGCAAACCTGATAGAGCTGTTAAGGTGTTCTTGTCTATGCATGAACATGGCTGTCCTCAGGATTTGAATTCCTTTAATACCATACTTGATGTGCTTTGCAAAGCTAAGCGTGTTGAAAAGGCTTATAATTTGTTTAAGGTGTTTAGGGGCAAGTTTAAGGCTGATTGTATTAGTTATAATATTATTGCAAATGGGTGGTGTTTGATTAAGCGAACCCCAAAGGCTTTGGAGCTTTTGGGGGAGATGGTGGAGAGGGGATTGGACCCGAGTTTAACCACGTATAACATAATGCTTAAAGGGTATTTTAGAGCAGGCCAGATTAAGGAAGCTTGGGAGTTCTTTTTGCAAATGAAGAAGAGGAAGTGTGAGATTGATGTTGTTACTTACACTACTTTGGTTCATGGGTTTGGTGTTGTTGGTGAGATTAAGAAAGCTCGAAAAGTTTTCGATGAGATGGTTGGGGAGGGGGTGCTTCCTTCCGTTGCAACTTACAATGCTTTGATTCAGGTTTTGTGCAAGAAAGATAGCGTGGAAAATGCTGTCTTGGTTTTTGAGGAGATGATGAGCAAGGGTTATGTGCCTAATGTGACCACTTATAGTGTGTTGATTAGAGGATTGTGTCATGCGGGTAACATGGAAAGGGCGATGGAGTATATGGAGAGAATGAAGGATGACAAGTGTGAACCAAATGTTCAGATATATAATGTTGTGATTCGTTACTTTTGTGATGCTGGAGAGATAGAAAAAGGGTTGAGTGTGTTTGAGAAGATGGGTGGTGGAATTTGCTTGCCTAATTTGGATACATACAACGTTTTGATTAGTGCCATGTTTGTGAGGAAGAAACCTGAAGATCTGTTAGTGGCTGGGAAGTTGTTGATTGAGATGGTTAACAGAGGATTTTTGCCCCGTAGGTTCACCTTTAATCGCATTCTGGATGGGCTTTTGTTAACAGGTAATCAAGCTTTTGCACAAGAGATTTTGAGATTGCAGAGCAGATGTGGCCGACTTCCCCGCCAGGTCAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

488

Amino Acids

55.46

Weight (kDa)

9.46

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74900
fragaria_vesca	FvH4_5g16320
malus_domestica	MD06G1181800.v1.1 MD14G1187700.v1.1
prunus_persica	Prupe.5G180100_v2.0.a1
pyrus_communis	pycom06g16080 pycom14g15560
rosa_chinensis	RchiOBHm_Chr7g0179811
rosa_laevigata	RLG00000005322
rosa_multiflora	Rmu_sc0001754.1_g000006 Rmu_sc0004156.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273450
rosa_rugosa	Rorug06G0428500
rosa_samantha	Rh7CG029100 Rh7DG028600
rosa_wichuraiana	Rw7G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	561, 612
AccII	CGCG	1 cut(s)	376
AciI	CCGC	6 cut(s)	26, 95, 370, 379, 1061, 1447
AclI	AACGTT	1 cut(s)	1245
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	114, 1435
AcsI	RAATTY	2 cut(s)	502, 1215
AcuI	CTGAAG	1 cut(s)	1302
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	5 cut(s)	213, 369, 370, 388, 757
AgsI	TTSAA	3 cut(s)	57, 502, 551
AjnI	CCWGG	1 cut(s)	1449
AluBI	AGCT	8 cut(s)	276, 320, 452, 539, 667, 764, 869, 1397
AluI	AGCT	8 cut(s)	276, 320, 452, 539, 667, 764, 869, 1397
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	3 cut(s)	388, 394, 700
AoxI	GGCC	7 cut(s)	114, 230, 342, 385, 391, 748, 1435
ApaI	GGGCCC	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	69, 431
ApoI	RAATTY	2 cut(s)	502, 1215
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AscI	GGCGCGCC	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	376, 378
AspS9I	GGNCC	7 cut(s)	230, 343, 351, 386, 391, 392, 697
AsuC2I	CCSGG	3 cut(s)	364, 389, 390
AsuHPI	GGTGA	4 cut(s)	67, 75, 866, 1342
AvaI	CYCGRG	3 cut(s)	388, 394, 700
AvaII	GGWCC	2 cut(s)	351, 697
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	81, 418
BccI	CCATC	8 cut(s)	248, 317, 673, 883, 1075, 1198, 1312, 1364
BceAI	ACGGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	1451
BciVI	GTATCC	1 cut(s)	1228
BcnI	CCSGG	3 cut(s)	364, 389, 390
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	1228
BglI	GCCNNNNNGGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	1285
BisI	GCNGC	4 cut(s)	27, 70, 379, 432
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	4 cut(s)	28, 71, 380, 433
BmcAI	AGTACT	1 cut(s)	258
Bme1390I	CCNGG	4 cut(s)	364, 389, 390, 1451
Bme18I	GGWCC	2 cut(s)	351, 697
BmeT110I	CYCGRG	3 cut(s)	388, 394, 700
BmgT120I	GGNCC	7 cut(s)	230, 343, 351, 386, 391, 392, 697
BmiI	GGNNCC	4 cut(s)	224, 353, 393, 699
BmrFI	CCNGG	4 cut(s)	364, 389, 390, 1451
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	357, 1153
BmuI	ACTGGG	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	1188
Bpu1102I	GCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	3 cut(s)	364, 389, 390
BsaAI	YACGTR	1 cut(s)	714
BsaJI	CCNNGG	3 cut(s)	226, 382, 388
Bsc4I	CCNNNNNNNGG	5 cut(s)	213, 369, 370, 388, 757
Bse1I	ACTGG	1 cut(s)	48
Bse21I	CCTNAGG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	1451
BseDI	CCNNGG	3 cut(s)	226, 382, 388
BseGI	GGATG	5 cut(s)	123, 240, 372, 1111, 1375
BseLI	CCNNNNNNNGG	5 cut(s)	213, 369, 370, 388, 757
BseMII	CTCAG	2 cut(s)	408, 506
BseNI	ACTGG	1 cut(s)	48
BsePI	GCGCGC	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	1004
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	81, 418
BseYI	CCCAGC	2 cut(s)	272, 1298
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	7 cut(s)	116, 232, 344, 387, 393, 750, 1437
BsiHKCI	CYCGRG	3 cut(s)	388, 394, 700
BsiSI	CCGG	2 cut(s)	364, 389
BslI	CCNNNNNNNGG	5 cut(s)	213, 369, 370, 388, 757
BsmI	GAATGC	1 cut(s)	1362
BsnI	GGCC	7 cut(s)	116, 232, 344, 387, 393, 750, 1437
BsoBI	CYCGRG	3 cut(s)	388, 394, 700
Bsp120I	GGGCCC	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	136, 1285
Bsp1720I	GCTNAGC	1 cut(s)	540
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	6 cut(s)	26, 95, 370, 379, 1061, 1447
BspANI	GGCC	7 cut(s)	116, 232, 344, 387, 393, 750, 1437
BspCNI	CTCAG	2 cut(s)	409, 505
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	4 cut(s)	224, 353, 393, 699
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	226, 382, 388
BssHII	GCGCGC	1 cut(s)	374
BssMI	GATC	2 cut(s)	136, 1285
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	1451
Bst6I	CTCTTC	1 cut(s)	785
BstBAI	YACGTR	1 cut(s)	714
BstC8I	GCNNGC	5 cut(s)	372, 376, 436, 748, 1223
BstDEI	CTNAG	3 cut(s)	417, 492, 540
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	123, 240, 372, 1111, 1375
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	376, 378
BstKTI	GATC	2 cut(s)	139, 1288
BstMBI	GATC	2 cut(s)	136, 1285
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 1434
BstNI	CCWGG	1 cut(s)	1451
BstSCI	CCNGG	4 cut(s)	362, 387, 388, 1449
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	81, 418
BstX2I	RGATCY	1 cut(s)	1285
BstYI	RGATCY	1 cut(s)	1285
Bsu36I	CCTNAGG	1 cut(s)	492
BsuI	GTATCC	1 cut(s)	1228
BsuRI	GGCC	7 cut(s)	116, 232, 344, 387, 393, 750, 1437
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	1094
BtsCI	GGATG	5 cut(s)	123, 240, 372, 1111, 1375
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	5 cut(s)	372, 376, 436, 748, 1223
CfoI	GCGC	2 cut(s)	376, 378
Cfr13I	GGNCC	7 cut(s)	230, 343, 351, 386, 391, 392, 697
Cfr9I	CCCGGG	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	8 cut(s)	63, 227, 476, 482, 836, 1058, 1069, 1261
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	417, 492, 540
DpnI	GATC	2 cut(s)	138, 1287
DpnII	GATC	2 cut(s)	136, 1285
DraI	TTTAAA	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	114, 1435
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	351, 697
Eco57I	CTGAAG	1 cut(s)	1302
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	3 cut(s)	388, 394, 700
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	1449
EcoT14I	CCWWGG	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	8 cut(s)	66, 230, 479, 485, 839, 1061, 1072, 1264
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	8 cut(s)	62, 226, 475, 481, 835, 1057, 1068, 1260
FauI	CCCGC	3 cut(s)	363, 1054, 1454
Fnu4HI	GCNGC	4 cut(s)	27, 70, 379, 432
FokI	GGATG	5 cut(s)	110, 227, 379, 1118, 1382
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	27, 70, 379, 432
GlaI	GCGC	2 cut(s)	375, 377
GluI	GCNGC	4 cut(s)	27, 70, 379, 432
GsaI	CCCAGC	2 cut(s)	276, 1302
GsuI	CTGGAG	1 cut(s)	1188
HaeIII	GGCC	7 cut(s)	116, 232, 344, 387, 393, 750, 1437
HapII	CCGG	2 cut(s)	364, 389
HhaI	GCGC	2 cut(s)	376, 378
Hin1II	CATG	8 cut(s)	66, 230, 479, 485, 839, 1061, 1072, 1264
Hin6I	GCGC	2 cut(s)	374, 376
HinP1I	GCGC	2 cut(s)	374, 376
HincII	GTYRAC	2 cut(s)	1324, 1383
HindII	GTYRAC	2 cut(s)	1324, 1383
HindIII	AAGCTT	2 cut(s)	762, 1395
HinfI	GANTC	4 cut(s)	104, 157, 937, 1147
HpaI	GTTAAC	2 cut(s)	1324, 1383
HpaII	CCGG	2 cut(s)	364, 389
HphI	GGTGA	4 cut(s)	67, 75, 866, 1342
Hpy166II	GTNNAC	7 cut(s)	6, 183, 199, 1118, 1324, 1350, 1383
Hpy188I	TCNGA	2 cut(s)	136, 1131
Hpy188III	TCNNGA	4 cut(s)	101, 220, 494, 1367
Hpy8I	GTNNAC	7 cut(s)	6, 183, 199, 1118, 1324, 1350, 1383
HpyAV	CCTTC	3 cut(s)	307, 921, 1096
HpyCH4IV	ACGT	2 cut(s)	713, 1245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 1434
HpyF3I	CTNAG	3 cut(s)	417, 492, 540
HpySE526I	ACGT	2 cut(s)	713, 1245
Hsp92II	CATG	8 cut(s)	66, 230, 479, 485, 839, 1061, 1072, 1264
HspAI	GCGC	2 cut(s)	374, 376
KspAI	GTTAAC	2 cut(s)	1324, 1383
Kzo9I	GATC	2 cut(s)	136, 1285
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	2 cut(s)	81, 418
LweI	GCATC	2 cut(s)	357, 1153
MaeII	ACGT	2 cut(s)	713, 1245
MaeIII	GTNAC	5 cut(s)	332, 814, 1021, 1064, 1151
MalI	GATC	2 cut(s)	138, 1287
MboI	GATC	2 cut(s)	136, 1285
MboII	GAAGA	6 cut(s)	152, 799, 802, 1213, 1285, 1295
MflI	RGATCY	1 cut(s)	1285
MhlI	GDGCHC	1 cut(s)	395
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	5 cut(s)	245, 502, 562, 1215, 1228
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	116
Mph1103I	ATGCAT	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	480, 1265
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	2 cut(s)	364, 389
MspR9I	CCNGG	4 cut(s)	364, 389, 390, 1451
Mva1269I	GAATGC	1 cut(s)	1362
MvaI	CCWGG	1 cut(s)	1451
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	384, 1434
NciI	CCSGG	3 cut(s)	364, 389, 390
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	136, 1285
NlaIII	CATG	8 cut(s)	66, 230, 479, 485, 839, 1061, 1072, 1264
NlaIV	GGNNCC	4 cut(s)	224, 353, 393, 699
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	2 cut(s)	332, 1021
NsiI	ATGCAT	1 cut(s)	477
PalAI	GGCGCGCC	1 cut(s)	374
PauI	GCGCGC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	1362
PfeI	GAWTC	3 cut(s)	157, 937, 1147
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	28, 71, 380, 433
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	714
PsiI	TTATAA	2 cut(s)	561, 612
Psp1406I	AACGTT	1 cut(s)	1245
Psp6I	CCWGG	1 cut(s)	1449
PspFI	CCCAGC	2 cut(s)	272, 1298
PspGI	CCWGG	1 cut(s)	1449
PspN4I	GGNNCC	4 cut(s)	224, 353, 393, 699
PspOMI	GGGCCC	1 cut(s)	391
PspPI	GGNCC	7 cut(s)	230, 343, 351, 386, 391, 392, 697
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	1285
PteI	GCGCGC	1 cut(s)	374
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	2 cut(s)	480, 1265
SatI	GCNGC	4 cut(s)	27, 70, 379, 432
Sau3AI	GATC	2 cut(s)	136, 1285
Sau96I	GGNCC	7 cut(s)	230, 343, 351, 386, 391, 392, 697
ScaI	AGTACT	1 cut(s)	258
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	4 cut(s)	364, 389, 390, 1451
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	357, 1153
SfcI	CTRYAG	1 cut(s)	186
SgsI	GGCGCGCC	1 cut(s)	374
SinI	GGWCC	2 cut(s)	351, 697
SmaI	CCCGGG	1 cut(s)	390
SmiMI	CAYNNNNRTG	2 cut(s)	480, 1265
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SrfI	GCCCGGGC	1 cut(s)	390
Sse9I	AATT	5 cut(s)	245, 502, 562, 1215, 1228
SsiI	CCGC	6 cut(s)	26, 95, 370, 379, 1061, 1447
SspI	AATATT	1 cut(s)	616
StyD4I	CCNGG	4 cut(s)	362, 387, 388, 1449
StyI	CCWWGG	1 cut(s)	226
TaiI	ACGT	2 cut(s)	716, 1248
TaqI	TCGA	5 cut(s)	177, 300, 312, 871, 882
TasI	AATT	5 cut(s)	245, 502, 562, 1215, 1228
TatI	WGTACW	1 cut(s)	256
TauI	GCSGC	2 cut(s)	29, 381
TfiI	GAWTC	3 cut(s)	157, 937, 1147
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	332, 1021
TseI	GCWGC	2 cut(s)	69, 431
Tsp45I	GTSAC	2 cut(s)	332, 1021
TspDTI	ATGAA	4 cut(s)	492, 800, 824, 1115
TspGWI	ACGGA	1 cut(s)	904
TspMI	CCCGGG	1 cut(s)	388
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	351, 697
XapI	RAATTY	2 cut(s)	502, 1215
XmaI	CCCGGG	1 cut(s)	388
ZrmI	AGTACT	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.