Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015351

Physical Location & Seq

Genomic Coordinates Forward (+)

65202543 .. 65204896

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGTTCACTCTGCTTCGCAAAACCCAATCACTGAAAAACCCAGAACCCAGTTTCTCAATTCCACTACATCACAACCTAACCACCTCACCACCACCACAACCGCCTCAAGACACCGCCTTTGCCACCCTTATTCTCAAATCCGACCCGCAATCCCTCCCCCGGATCCTCCACGACCCGAACATCCACTGGACCCCCGACTCCGTCAACAAAACCCTCAAACGCCTCTGGAACCATGGCCCCAAAGCCCTCCTCTTCTTCAAAACCCTCGACCGCCACCCCACCTACACCCACTCCTCCTCCTCCTACGACCACGCCGTCGACATCGCCGGCCGTTTGCGCGACTACAAGTCCCTCTGGGCCTTCGTCTCCCGAATGCGCGCCCGCCGGGTCGGCCCGGGTCCGAGAACCTTCGCCATCATCGCCGAGAGGTACGTCGCAGCCGGCAAACCCGATAGAGCTGTCAAAGTTTTTCTCTCTATGCATGAACATGGGTGCCCTCAGGATTTGAATTCTTTCAATACTGTTCTTGATGTGCTCTGTAAAGCTAAGCGAGTTGAAAAGGCTTATAATTTGTTTAAGGTGTTTAGGGGAAGATTTAGAGCTGATTGTGTTAGTTACAATGTGATTGTTAATGGGTGGTGTTTGATTAAGAGGACTCCTAAGGCATTAGAGGTTTTGAGGGAGATGGTGGAGAGAGGAATCAAGCCGAGTTTGGTTACTTATAATGTGATGCTTAAAGGGTATCTTAGAGCTGGGCAGGTTAAGAAGGCGAGGAAGATTTTTGATGGGATGGTTGAGGAGGGGGTGCTGCCTTCGGTTGCGACTTACAATGCTTTGATTCAGGTTTTGTGTAAGAAGGATAGCGTGGAGAATGCGGTGGTGGTTTTTGAGGAGATGGTGAGTAAGGGTTATGTGCCTAATGTGACGACGTATAATGTGTTGATTAGAGGGCTGTGTCATGCTGGTGATATGGACAGGGGGATGGAGTTGATGGGGAGGATGAAGGGTGATGAGTGTGAGCCGAATGTTCAGACGTATAATGTTGTGATTCGGTACTTTTGTGATGATGGGGAGATTGATAAGGCGTTGGATGTGTTTGAGAAGATGGGTAGGGGAGAGTGCTTGCCTAATTTGGATACATACAATGTGTTGATTAGTGCCATGTTTGTGAGGAAGAAACCTGAAGATTTATTAGTGGCAGGGAAGTTGCTGATTGAGATGGTTGATAGAGGATTTTTGCCCCGCAAGTACACCTTTAATCGGGTTCTGGATGGGCTTTTGTTAACTGGTAATCAAGGTTTTGCAAAAGAGATTCTGAGATTGCAGAGCAAATGTGGCCGTCTTCCTCGTCAGCCCATTACTGCTCCAAAGGGATTTCCCATTCCTGTTGAAGCTTCACGCTCGATCTTATCTGCAACATTCTCTTCTCTGCTGTCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

480

Amino Acids

54.23

Weight (kDa)

9.56

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	199 - 247	1.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	202 - 248	2.9e-12	PPR repeat family
TPR_24	PF23276	222 - 330	2.2e-11	Fungal tetratrico peptide repeats
PPR_3	PF13812	225 - 283	9.3e-16	Pentatricopeptide repeat domain
PPR_1	PF12854	232 - 265	1.6e-07	PPR repeat
PPR_2	PF13041	236 - 285	3.2e-16	PPR repeat family
PPR	PF01535	239 - 269	2.6e-08	PPR repeat
PPR_long	PF17177	260 - 384	1.1e-13	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	268 - 300	4.7e-09	PPR repeat
PPR_2	PF13041	271 - 320	2.8e-18	PPR repeat family
PPR	PF01535	275 - 303	6.5e-07	PPR repeat
PPR_3	PF13812	295 - 353	4.7e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	302 - 335	7.9e-10	PPR repeat
PPR_2	PF13041	306 - 355	7.2e-15	PPR repeat family
PPR	PF01535	310 - 339	5.8e-07	PPR repeat
PPR_1	PF12854	338 - 369	1.6e-09	PPR repeat
PPR_2	PF13041	341 - 388	1.3e-14	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74900
fragaria_vesca	FvH4_5g16320
malus_domestica	MD06G1181800.v1.1 MD14G1187700.v1.1
prunus_persica	Prupe.5G180100_v2.0.a1
pyrus_communis	pycom06g16080 pycom14g15560
rosa_chinensis	RchiOBHm_Chr7g0179811
rosa_laevigata	RLG00000005322
rosa_multiflora	Rmu_sc0001754.1_g000006 Rmu_sc0004156.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273450
rosa_rugosa	Rorug06G0428500
rosa_samantha	Rh7CG029100 Rh7DG028600
rosa_wichuraiana	Rw7G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	567, 723
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	748
AccB1I	GGYRCC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	2 cut(s)	339, 378
AciI	CCGC	7 cut(s)	101, 114, 146, 271, 382, 875, 1243
AclWI	GGATC	2 cut(s)	157, 170
AcoI	YGGCCR	2 cut(s)	328, 1336
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	1203
AfaI	GTAC	3 cut(s)	431, 1055, 1250
AfiI	CCNNNNNNNGG	2 cut(s)	159, 1260
AgsI	TTSAA	5 cut(s)	259, 508, 517, 557, 1391
AhdI	GACNNNNNGTC	1 cut(s)	346
AluBI	AGCT	5 cut(s)	458, 545, 602, 752, 1394
AluI	AGCT	5 cut(s)	458, 545, 602, 752, 1394
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	2 cut(s)	157, 170
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	5 cut(s)	235, 328, 357, 391, 1336
ApeKI	GCWGC	2 cut(s)	437, 808
ApoI	RAATTY	1 cut(s)	508
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	3 cut(s)	339, 378, 380
AspS9I	GGNCC	5 cut(s)	189, 236, 357, 392, 398
AsuC2I	CCSGG	4 cut(s)	160, 386, 395, 396
AsuHPI	GGTGA	4 cut(s)	78, 910, 977, 1019
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	2 cut(s)	189, 398
AxyI	CCTNAGG	2 cut(s)	498, 660
BaeGI	GKGCMC	1 cut(s)	497
BaeI	ACNNNNGTAYC	2 cut(s)	1045, 1078
BamHI	GGATCC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	1334
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	449, 795
BceAI	ACGGC	3 cut(s)	299, 315, 1323
BciVI	GTATCC	1 cut(s)	1129
BcnI	CCSGG	4 cut(s)	160, 386, 395, 396
BcoDI	GTCTC	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	748
BfuI	GTATCC	1 cut(s)	1129
BglI	GCCNNNNNGGC	1 cut(s)	390
BisI	GCNGC	2 cut(s)	438, 809
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	2 cut(s)	439, 810
Bme1390I	CCNGG	4 cut(s)	160, 386, 395, 396
Bme18I	GGWCC	2 cut(s)	189, 398
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	5 cut(s)	189, 236, 357, 392, 398
BmiI	GGNNCC	6 cut(s)	164, 191, 230, 238, 399, 494
BmrFI	CCNGG	4 cut(s)	160, 386, 395, 396
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	720
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	1334
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	90
BpuMI	CCSGG	4 cut(s)	160, 386, 395, 396
BsaJI	CCNNGG	3 cut(s)	158, 232, 394
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 281, 305, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 1260
Bse118I	RCCGGY	2 cut(s)	326, 440
Bse1I	ACTGG	3 cut(s)	48, 191, 1291
Bse21I	CCTNAGG	2 cut(s)	498, 660
BseDI	CCNNGG	3 cut(s)	158, 232, 394
BseGI	GGATG	6 cut(s)	180, 795, 987, 1005, 1096, 1276
BseLI	CCNNNNNNNGG	2 cut(s)	159, 1260
BseMII	CTCAG	2 cut(s)	512, 1307
BseNI	ACTGG	3 cut(s)	48, 191, 1291
BsePI	GCGCGC	1 cut(s)	376
BseRI	GAGGAG	6 cut(s)	239, 283, 286, 289, 812, 905
BseSI	GKGCMC	1 cut(s)	497
BseX3I	CGGCCG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	449, 795
BseYI	CCCAGC	1 cut(s)	752
Bsh1236I	CGCG	2 cut(s)	339, 378
Bsh1285I	CGRYCG	2 cut(s)	271, 331
BshFI	GGCC	5 cut(s)	237, 330, 359, 393, 1338
BshNI	GGYRCC	1 cut(s)	492
BsiEI	CGRYCG	2 cut(s)	271, 331
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	5 cut(s)	160, 327, 385, 395, 441
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	159, 1260
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	2 cut(s)	378, 877
BsnI	GGCC	5 cut(s)	237, 330, 359, 393, 1338
BsoBI	CYCGRG	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	497, 537
Bsp143I	GATC	2 cut(s)	162, 1404
Bsp1720I	GCTNAGC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	7 cut(s)	101, 114, 146, 271, 382, 875, 1243
BspANI	GGCC	5 cut(s)	237, 330, 359, 393, 1338
BspCNI	CTCAG	2 cut(s)	511, 1308
BspFNI	CGCG	2 cut(s)	339, 378
BspLI	GGNNCC	6 cut(s)	164, 191, 230, 238, 399, 494
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	2 cut(s)	157, 170
BspT107I	GGYRCC	1 cut(s)	492
BsrFI	RCCGGY	2 cut(s)	326, 440
BsrI	ACTGG	3 cut(s)	48, 191, 1291
BssAI	RCCGGY	2 cut(s)	326, 440
BssECI	CCNNGG	3 cut(s)	158, 232, 394
BssHII	GCGCGC	1 cut(s)	376
BssMI	GATC	2 cut(s)	162, 1404
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	2 cut(s)	257, 1429
BstC8I	GCNNGC	5 cut(s)	328, 378, 382, 442, 1124
BstDEI	CTNAG	5 cut(s)	498, 546, 660, 746, 1316
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	6 cut(s)	180, 795, 987, 1005, 1096, 1276
BstFNI	CGCG	2 cut(s)	339, 378
BstHHI	GCGC	3 cut(s)	339, 378, 380
BstKTI	GATC	2 cut(s)	165, 1407
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	2 cut(s)	162, 1404
BstMCI	CGRYCG	2 cut(s)	271, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	336, 390, 419, 1335
BstSCI	CCNGG	4 cut(s)	158, 384, 393, 394
BstSLI	GKGCMC	1 cut(s)	497
BstUI	CGCG	2 cut(s)	339, 378
BstV1I	GCAGC	2 cut(s)	449, 795
BstV2I	GAAGAC	1 cut(s)	1334
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BstZI	CGGCCG	1 cut(s)	328
Bsu36I	CCTNAGG	2 cut(s)	498, 660
BsuI	GTATCC	1 cut(s)	1129
BsuRI	GGCC	5 cut(s)	237, 330, 359, 393, 1338
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	2 cut(s)	307, 403
BtsCI	GGATG	6 cut(s)	180, 795, 987, 1005, 1096, 1276
BtsIMutI	CAGTG	2 cut(s)	29, 184
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	5 cut(s)	328, 378, 382, 442, 1124
CfoI	GCGC	3 cut(s)	339, 378, 380
Cfr10I	RCCGGY	2 cut(s)	326, 440
Cfr13I	GGNCC	5 cut(s)	189, 236, 357, 392, 398
Cfr9I	CCCGGG	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	430, 1054, 1249
CviAII	CATG	5 cut(s)	233, 482, 488, 959, 1162
CviQI	GTAC	3 cut(s)	430, 1054, 1249
DdeI	CTNAG	5 cut(s)	498, 546, 660, 746, 1316
DpnI	GATC	2 cut(s)	164, 1406
DpnII	GATC	2 cut(s)	162, 1404
DrdI	GACNNNNNNGTC	1 cut(s)	314
DriI	GACNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	328, 1336
EagI	CGGCCG	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	257, 1429
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	2 cut(s)	257, 1429
EclXI	CGGCCG	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	189, 398
Eco52I	CGGCCG	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	1203
Eco81I	CCTNAGG	2 cut(s)	498, 660
Eco88I	CYCGRG	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	5 cut(s)	236, 485, 491, 962, 1165
FalI	AAGNNNNNCTT	4 cut(s)	729, 761, 1238, 1270
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	5 cut(s)	232, 481, 487, 958, 1161
FauI	CCCGC	3 cut(s)	153, 389, 1250
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	438, 809
FokI	GGATG	6 cut(s)	167, 802, 994, 1012, 1103, 1283
Fsp4HI	GCNGC	2 cut(s)	438, 809
GlaI	GCGC	3 cut(s)	338, 377, 379
GluI	GCNGC	2 cut(s)	438, 809
GsaI	CCCAGC	1 cut(s)	756
HaeIII	GGCC	5 cut(s)	237, 330, 359, 393, 1338
HapII	CCGG	5 cut(s)	160, 327, 385, 395, 441
HhaI	GCGC	3 cut(s)	339, 378, 380
Hin1II	CATG	5 cut(s)	236, 485, 491, 962, 1165
Hin6I	GCGC	3 cut(s)	337, 376, 378
HinP1I	GCGC	3 cut(s)	337, 376, 378
HincII	GTYRAC	3 cut(s)	205, 319, 1284
HindII	GTYRAC	3 cut(s)	205, 319, 1284
HindIII	AAGCTT	1 cut(s)	1392
HinfI	GANTC	6 cut(s)	197, 655, 699, 838, 1048, 1312
HpaI	GTTAAC	1 cut(s)	1284
HpaII	CCGG	5 cut(s)	160, 327, 385, 395, 441
HphI	GGTGA	4 cut(s)	78, 910, 977, 1019
Hpy166II	GTNNAC	5 cut(s)	6, 205, 319, 1251, 1284
Hpy188I	TCNGA	4 cut(s)	142, 402, 1032, 1317
Hpy188III	TCNNGA	6 cut(s)	107, 226, 369, 500, 527, 1268
Hpy8I	GTNNAC	5 cut(s)	6, 205, 319, 1251, 1284
Hpy99I	CGWCG	3 cut(s)	320, 437, 931
HpyAV	CCTTC	6 cut(s)	370, 418, 760, 822, 850, 997
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	3 cut(s)	432, 929, 1034
HpyCH4V	TGCA	4 cut(s)	481, 1304, 1324, 1415
HpyF10VI	GCNNNNNNNGC	4 cut(s)	336, 390, 419, 1335
HpyF3I	CTNAG	5 cut(s)	498, 546, 660, 746, 1316
HpySE526I	ACGT	3 cut(s)	432, 929, 1034
Hsp92II	CATG	5 cut(s)	236, 485, 491, 962, 1165
HspAI	GCGC	3 cut(s)	337, 376, 378
KroI	GCCGGC	2 cut(s)	326, 440
KroNI	GCCGGC	2 cut(s)	328, 442
KspAI	GTTAAC	1 cut(s)	1284
Kzo9I	GATC	2 cut(s)	162, 1404
LmnI	GCTCC	1 cut(s)	1369
Lsp1109I	GCAGC	2 cut(s)	449, 795
LweI	GCATC	1 cut(s)	720
MaeII	ACGT	3 cut(s)	432, 929, 1034
MaeIII	GTNAC	3 cut(s)	614, 715, 922
MalI	GATC	2 cut(s)	164, 1406
MboI	GATC	2 cut(s)	162, 1404
MboII	GAAGA	9 cut(s)	244, 247, 603, 787, 1114, 1186, 1196, 1334, 1416
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	497, 537
MluCI	AATT	4 cut(s)	57, 508, 568, 1129
MlyI	GAGTC	2 cut(s)	191, 649
MmeI	TCCRAC	2 cut(s)	165, 1068
Mph1103I	ATGCAT	1 cut(s)	483
MroNI	GCCGGC	2 cut(s)	326, 440
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	7 cut(s)	576, 630, 648, 735, 762, 1257, 1283
MslI	CAYNNNNRTG	3 cut(s)	486, 963, 1166
MspI	CCGG	5 cut(s)	160, 327, 385, 395, 441
MspR9I	CCNGG	4 cut(s)	160, 386, 395, 396
Mva1269I	GAATGC	2 cut(s)	378, 877
MvnI	CGCG	2 cut(s)	339, 378
MwoI	GCNNNNNNNGC	4 cut(s)	336, 390, 419, 1335
NaeI	GCCGGC	2 cut(s)	328, 442
NciI	CCSGG	4 cut(s)	160, 386, 395, 396
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	162, 1404
NgoMIV	GCCGGC	2 cut(s)	326, 440
NlaIII	CATG	5 cut(s)	236, 485, 491, 962, 1165
NlaIV	GGNNCC	6 cut(s)	164, 191, 230, 238, 399, 494
NmeAIII	GCCGAG	2 cut(s)	448, 732
NmuCI	GTSAC	1 cut(s)	922
NsiI	ATGCAT	1 cut(s)	483
PauI	GCGCGC	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PctI	GAATGC	2 cut(s)	378, 877
PdiI	GCCGGC	2 cut(s)	328, 442
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	4 cut(s)	699, 838, 1048, 1312
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	439, 810
PleI	GAGTC	2 cut(s)	191, 649
PpsI	GAGTC	2 cut(s)	191, 649
PsiI	TTATAA	2 cut(s)	567, 723
PspFI	CCCAGC	1 cut(s)	752
PspN4I	GGNNCC	6 cut(s)	164, 191, 230, 238, 399, 494
PspPI	GGNCC	5 cut(s)	189, 236, 357, 392, 398
PsuI	RGATCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	200
PteI	GCGCGC	1 cut(s)	376
RsaI	GTAC	3 cut(s)	431, 1055, 1250
RsaNI	GTAC	3 cut(s)	430, 1054, 1249
RseI	CAYNNNNRTG	3 cut(s)	486, 963, 1166
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	7 cut(s)	576, 630, 648, 735, 762, 1257, 1283
SatI	GCNGC	2 cut(s)	438, 809
Sau3AI	GATC	2 cut(s)	162, 1404
Sau96I	GGNCC	5 cut(s)	189, 236, 357, 392, 398
SchI	GAGTC	2 cut(s)	191, 649
ScrFI	CCNGG	4 cut(s)	160, 386, 395, 396
SduI	GDGCHC	2 cut(s)	497, 537
SfaNI	GCATC	1 cut(s)	720
SinI	GGWCC	2 cut(s)	189, 398
SmaI	CCCGGG	1 cut(s)	396
SmiMI	CAYNNNNRTG	3 cut(s)	486, 963, 1166
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	57, 508, 568, 1129
SsiI	CCGC	7 cut(s)	101, 114, 146, 271, 382, 875, 1243
StyD4I	CCNGG	4 cut(s)	158, 384, 393, 394
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	3 cut(s)	435, 932, 1037
TaqI	TCGA	3 cut(s)	267, 318, 1403
TasI	AATT	4 cut(s)	57, 508, 568, 1129
TatI	WGTACW	1 cut(s)	1248
TfiI	GAWTC	4 cut(s)	699, 838, 1048, 1312
Tru1I	TTAA	7 cut(s)	576, 630, 648, 735, 762, 1257, 1283
Tru9I	TTAA	7 cut(s)	576, 630, 648, 735, 762, 1257, 1283
TscAI	CASTG	2 cut(s)	36, 191
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	2 cut(s)	437, 808
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	2 cut(s)	498, 1016
TspGWI	ACGGA	1 cut(s)	190
TspMI	CCCGGG	1 cut(s)	394
TspRI	CASTG	2 cut(s)	36, 191
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	189, 398
XapI	RAATTY	1 cut(s)	508
XmaI	CCCGGG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.