Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015351

Physical Location & Seq

Genomic Coordinates Forward (+)

66771273 .. 66773263

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGCTCACTCTGCTTCGCAAAACCCCATCACTGAAAAACCCAGAACCCAGTTTCTCAATTCCACTACATCACAACCTAACCACCTCACCACCACCACCACAACCGCCTCAAGACGCCGCCTTTGCCACCCTTATTCTCAAATCCGACCCGCAATCCCTCCCCCGGATCCTCCACGACCCGGACATCCACTGGACCCCCGACTCGGTCAACAAAACCCTCAAGCGCCTCTGGAACCATGGCCCCAAAGCCCTCCTCTTCTTCAAAACCCTCGACCGCCACCCCACCTACACCCACTCCTCCTCCTCCTACGACCACGCCGTCGACATCGCCGGCCGTTTACGCGACTACAAGTCCCTCTGGGCCTTCGTCTCCCGAATGCGCGCCCGCCGGGTCGGCCCGGGTCCGAGAACCTTCGCCATCATCGCCGAGAGGTACGTCGCCGCCGGCAAACCCGATAGAGCTGTCAAAGTTTTTCTCTCTATGCATGAACATGGGTGCCCTCAGGATTTGAATTCTTTCAATACTGTTCTTGATGTGCTCTGTAAAGCTAAGCGAGTTGAAAAGGCTTACAATTTGTTTAAGGTGTTTAGGGGAAGATTTAGAGCTGATTGTGTTAGTTACAATGTGATTGTTAATGGGTGGTGTTTGATTAAGAGGACTCCTAAGGCATTAGAGGTTTTGAGGGAGATGGTGGAGAGGGGAATCGAGCCGAGTTTGGTTACTTATAATGTGATGCTTAAAGGGTATCTTAGAGCTGGGCAGGTTAAGGAGGCGTGGGAGTTTTTTTTGGAAATGAAGAAGAGGAAGTGTGAGATTGATGTTGTTACTTATACTACTCTGGTTCATGGGTTTGGTGTTGTCGGGGAGGTGAAGAAGGCGAGGAAGATTTTCGATGGGATGGTTGAGGAGGGGGTGCTGCCTTCGGTTGCGACTTACAATGCGTTGATTCAGGTTTTGTGTAAGAAGGATAGCGTGGAGAATGCGGTGGTGGTTTTTGAGGAGATGGTGAGTAAAGGTTATGTGCCTAATGTGACGACGTATAATGTGTTGATTAGAGGGCTGTGTCATGCTGGTGATATGGACAGGGGGATGGAGTTGATGGGGAGGATGAAGGGTGATGAGTGTGAGCCGAATGTTCAGACGTATAATGTTGTGATTCGGTACTTTTGTGATGATGGGGAGATTGATAAGGCGTTGGATGTGTTTGAGAAGATGGGTAGGGGAGAGTGCTTGCCTAATTTGGATACATACAATGTGTTGATTAGTGCCATGTTTGTGAGGAAGAAACCTGAAGATTTGTTAGTGGCAGGGAAGTTGCTGATTGAGATGGTTGATAGAGGATTTTTGCCCCGCAAGTACACCTTTAATCGGGTTCTGGATGGGCTTTTGTTAACTGGTAATCAAGGTTTTGCAAAAGAGATTCTGAGATTGCAGAGCAAATGTGGCCGTCTTCCTCGTCAGAACAAGGAATTTATTGTGATGAGGCTCAGGATGTTTGAACCTTTTTCACAGAGTGGTGTTATCATATGTGATGCTTCTGGAGTTTCTTTTGTGCTGGTCTCGTCCACCATCGCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

527

Amino Acids

59.54

Weight (kDa)

9.26

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	200 - 249	2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	203 - 249	3.8e-12	PPR repeat family
PPR_3	PF13812	226 - 271	7.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	233 - 266	6.5e-08	PPR repeat
PPR_2	PF13041	237 - 284	6.5e-19	PPR repeat family
PPR	PF01535	240 - 270	5.3e-09	PPR repeat
TPR_24	PF23276	258 - 366	5.6e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	263 - 319	3.4e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	269 - 301	1.3e-07	PPR repeat
PPR	PF01535	275 - 305	5.3e-06	PPR repeat
PPR_long	PF17177	289 - 420	1.2e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	304 - 336	5.3e-09	PPR repeat
PPR_2	PF13041	307 - 356	3.1e-18	PPR repeat family
PPR	PF01535	311 - 339	7.3e-07	PPR repeat
PPR_3	PF13812	331 - 389	5.3e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	338 - 371	8.8e-10	PPR repeat
PPR_2	PF13041	342 - 391	8.7e-15	PPR repeat family
PPR	PF01535	346 - 375	6.5e-07	PPR repeat
PPR_1	PF12854	374 - 405	1.7e-09	PPR repeat
PPR_2	PF13041	377 - 424	1.4e-14	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74900
fragaria_vesca	FvH4_5g16320
malus_domestica	MD06G1181800.v1.1 MD14G1187700.v1.1
prunus_persica	Prupe.5G180100_v2.0.a1
pyrus_communis	pycom06g16080 pycom14g15560
rosa_chinensis	RchiOBHm_Chr7g0179811
rosa_laevigata	RLG00000005322
rosa_multiflora	Rmu_sc0001754.1_g000006 Rmu_sc0004156.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273450
rosa_rugosa	Rorug06G0428500
rosa_samantha	Rh7CG029100 Rh7DG028600
rosa_wichuraiana	Rw7G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	726
AasI	GACNNNNNNGTC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	2 cut(s)	342, 381
AciI	CCGC	8 cut(s)	104, 117, 149, 274, 385, 441, 983, 1351
AclWI	GGATC	2 cut(s)	160, 173
AcoI	YGGCCR	2 cut(s)	331, 1444
AcsI	RAATTY	2 cut(s)	511, 1469
AcuI	CTGAAG	1 cut(s)	1311
AcyI	GRCGYC	1 cut(s)	114
AdeI	CACNNNGTG	1 cut(s)	1514
AfaI	GTAC	3 cut(s)	434, 1163, 1358
AfiI	CCNNNNNNNGG	4 cut(s)	162, 178, 202, 1368
AgsI	TTSAA	5 cut(s)	262, 511, 520, 560, 1499
AhdI	GACNNNNNGTC	1 cut(s)	349
AluBI	AGCT	4 cut(s)	461, 548, 605, 755
AluI	AGCT	4 cut(s)	461, 548, 605, 755
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	373, 1564
AlwI	GGATC	2 cut(s)	160, 173
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	5 cut(s)	238, 331, 360, 394, 1444
ApeKI	GCWGC	1 cut(s)	916
ApoI	RAATTY	2 cut(s)	511, 1469
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	2 cut(s)	515, 887
AspLEI	GCGC	3 cut(s)	225, 381, 383
AspS9I	GGNCC	5 cut(s)	192, 239, 360, 395, 401
AsuC2I	CCSGG	5 cut(s)	163, 179, 389, 398, 399
AsuHPI	GGTGA	5 cut(s)	78, 880, 1018, 1085, 1127
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	2 cut(s)	192, 401
AxyI	CCTNAGG	2 cut(s)	501, 663
BaeGI	GKGCMC	1 cut(s)	500
BaeI	ACNNNNGTAYC	2 cut(s)	1153, 1186
BamHI	GGATCC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	1442
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	903
BceAI	ACGGC	3 cut(s)	302, 318, 1431
BciVI	GTATCC	1 cut(s)	1237
BcnI	CCSGG	5 cut(s)	163, 179, 389, 398, 399
BcoDI	GTCTC	2 cut(s)	373, 1564
BfoI	RGCGCY	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	751
BfuI	GTATCC	1 cut(s)	1237
BglI	GCCNNNNNGGC	1 cut(s)	393
BisI	GCNGC	3 cut(s)	117, 441, 917
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	3 cut(s)	118, 442, 918
Bme1390I	CCNGG	5 cut(s)	163, 179, 389, 398, 399
Bme18I	GGWCC	2 cut(s)	192, 401
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	5 cut(s)	192, 239, 360, 395, 401
BmiI	GGNNCC	6 cut(s)	167, 194, 233, 241, 402, 497
BmrFI	CCNGG	5 cut(s)	163, 179, 389, 398, 399
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	723, 1522
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	1442
BpmI	CTGGAG	1 cut(s)	1560
Bpu10I	CCTNAGC	1 cut(s)	1487
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	2 cut(s)	93, 203
BpuMI	CCSGG	5 cut(s)	163, 179, 389, 398, 399
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	1564
BsaJI	CCNNGG	3 cut(s)	161, 235, 397
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 284, 308, 314
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 178, 202, 1368
Bse118I	RCCGGY	2 cut(s)	329, 443
Bse1I	ACTGG	3 cut(s)	48, 194, 1399
Bse21I	CCTNAGG	2 cut(s)	501, 663
BseDI	CCNNGG	3 cut(s)	161, 235, 397
BseGI	GGATG	8 cut(s)	183, 903, 1095, 1113, 1204, 1384, 1497, 1574
BseLI	CCNNNNNNNGG	4 cut(s)	162, 178, 202, 1368
BseMII	CTCAG	3 cut(s)	515, 1415, 1501
BseNI	ACTGG	3 cut(s)	48, 194, 1399
BsePI	GCGCGC	1 cut(s)	379
BseRI	GAGGAG	6 cut(s)	242, 286, 289, 292, 920, 1013
BseSI	GKGCMC	1 cut(s)	500
BseX3I	CGGCCG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	903
BseYI	CCCAGC	1 cut(s)	755
Bsh1236I	CGCG	2 cut(s)	342, 381
Bsh1285I	CGRYCG	2 cut(s)	274, 334
BshFI	GGCC	5 cut(s)	240, 333, 362, 396, 1446
BshNI	GGYRCC	1 cut(s)	495
BsiEI	CGRYCG	2 cut(s)	274, 334
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	6 cut(s)	163, 179, 330, 388, 398, 444
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	162, 178, 202, 1368
BsmAI	GTCTC	2 cut(s)	373, 1564
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	2 cut(s)	381, 985
BsnI	GGCC	5 cut(s)	240, 333, 362, 396, 1446
Bso31I	GGTCTC	1 cut(s)	1564
BsoBI	CYCGRG	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	500, 540
Bsp143I	GATC	1 cut(s)	165
Bsp1720I	GCTNAGC	1 cut(s)	549
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	8 cut(s)	104, 117, 149, 274, 385, 441, 983, 1351
BspANI	GGCC	5 cut(s)	240, 333, 362, 396, 1446
BspCNI	CTCAG	3 cut(s)	514, 1416, 1500
BspFNI	CGCG	2 cut(s)	342, 381
BspLI	GGNNCC	6 cut(s)	167, 194, 233, 241, 402, 497
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	2 cut(s)	160, 173
BspT107I	GGYRCC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	1564
BsrFI	RCCGGY	2 cut(s)	329, 443
BsrI	ACTGG	3 cut(s)	48, 194, 1399
BssAI	RCCGGY	2 cut(s)	329, 443
BssECI	CCNNGG	3 cut(s)	161, 235, 397
BssHII	GCGCGC	1 cut(s)	379
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	2 cut(s)	260, 794
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	5 cut(s)	331, 381, 385, 445, 1232
BstDEI	CTNAG	6 cut(s)	501, 549, 663, 749, 1424, 1487
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	8 cut(s)	183, 903, 1095, 1113, 1204, 1384, 1497, 1574
BstFNI	CGCG	2 cut(s)	342, 381
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	3 cut(s)	225, 381, 383
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	373, 1564
BstMBI	GATC	1 cut(s)	165
BstMCI	CGRYCG	2 cut(s)	274, 334
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 122, 339, 393, 422, 1443
BstSCI	CCNGG	5 cut(s)	161, 177, 387, 396, 397
BstSLI	GKGCMC	1 cut(s)	500
BstUI	CGCG	2 cut(s)	342, 381
BstV1I	GCAGC	1 cut(s)	903
BstV2I	GAAGAC	1 cut(s)	1442
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BstZI	CGGCCG	1 cut(s)	331
Bsu36I	CCTNAGG	2 cut(s)	501, 663
BsuI	GTATCC	1 cut(s)	1237
BsuRI	GGCC	5 cut(s)	240, 333, 362, 396, 1446
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	3 cut(s)	310, 406, 1555
BtsCI	GGATG	8 cut(s)	183, 903, 1095, 1113, 1204, 1384, 1497, 1574
BtsIMutI	CAGTG	2 cut(s)	29, 187
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	5 cut(s)	331, 381, 385, 445, 1232
CfoI	GCGC	3 cut(s)	225, 381, 383
Cfr10I	RCCGGY	2 cut(s)	329, 443
Cfr13I	GGNCC	5 cut(s)	192, 239, 360, 395, 401
Cfr9I	CCCGGG	1 cut(s)	397
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	433, 1162, 1357
CviAII	CATG	6 cut(s)	236, 485, 491, 845, 1067, 1270
CviQI	GTAC	3 cut(s)	433, 1162, 1357
DdeI	CTNAG	6 cut(s)	501, 549, 663, 749, 1424, 1487
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DraIII	CACNNNGTG	1 cut(s)	1514
DrdI	GACNNNNNNGTC	1 cut(s)	317
DriI	GACNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	331, 1444
EagI	CGGCCG	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	260, 794
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	2 cut(s)	260, 794
EclXI	CGGCCG	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	1564
Eco47I	GGWCC	2 cut(s)	192, 401
Eco52I	CGGCCG	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	1311
Eco81I	CCTNAGG	2 cut(s)	501, 663
Eco88I	CYCGRG	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	6 cut(s)	239, 488, 494, 848, 1070, 1273
FalI	AAGNNNNNCTT	4 cut(s)	732, 764, 1346, 1378
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	6 cut(s)	235, 484, 490, 844, 1066, 1269
FauI	CCCGC	3 cut(s)	156, 392, 1358
FauNDI	CATATG	1 cut(s)	1526
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	117, 441, 917
FokI	GGATG	8 cut(s)	170, 910, 1102, 1120, 1211, 1391, 1504, 1561
Fsp4HI	GCNGC	3 cut(s)	117, 441, 917
GlaI	GCGC	3 cut(s)	224, 380, 382
GluI	GCNGC	3 cut(s)	117, 441, 917
GsaI	CCCAGC	1 cut(s)	759
GsuI	CTGGAG	1 cut(s)	1560
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	5 cut(s)	240, 333, 362, 396, 1446
HapII	CCGG	6 cut(s)	163, 179, 330, 388, 398, 444
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	3 cut(s)	225, 381, 383
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	239, 488, 494, 848, 1070, 1273
Hin6I	GCGC	3 cut(s)	223, 379, 381
HinP1I	GCGC	3 cut(s)	223, 379, 381
HincII	GTYRAC	3 cut(s)	208, 322, 1392
HindII	GTYRAC	3 cut(s)	208, 322, 1392
HinfI	GANTC	6 cut(s)	200, 658, 702, 946, 1156, 1420
HpaI	GTTAAC	1 cut(s)	1392
HpaII	CCGG	6 cut(s)	163, 179, 330, 388, 398, 444
HphI	GGTGA	5 cut(s)	78, 880, 1018, 1085, 1127
Hpy166II	GTNNAC	6 cut(s)	208, 322, 338, 1359, 1392, 1566
Hpy188I	TCNGA	5 cut(s)	145, 405, 1140, 1425, 1461
Hpy188III	TCNNGA	9 cut(s)	110, 229, 372, 503, 530, 1376, 1489, 1539, 1578
Hpy8I	GTNNAC	6 cut(s)	208, 322, 338, 1359, 1392, 1566
Hpy99I	CGWCG	3 cut(s)	323, 440, 1039
HpyAV	CCTTC	6 cut(s)	373, 421, 868, 930, 958, 1105
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	3 cut(s)	435, 1037, 1142
HpyCH4V	TGCA	3 cut(s)	484, 1412, 1432
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 122, 339, 393, 422, 1443
HpyF3I	CTNAG	6 cut(s)	501, 549, 663, 749, 1424, 1487
HpySE526I	ACGT	3 cut(s)	435, 1037, 1142
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	239, 488, 494, 848, 1070, 1273
HspAI	GCGC	3 cut(s)	223, 379, 381
KroI	GCCGGC	2 cut(s)	329, 443
KroNI	GCCGGC	2 cut(s)	331, 445
KspAI	GTTAAC	1 cut(s)	1392
Kzo9I	GATC	1 cut(s)	165
Lsp1109I	GCAGC	1 cut(s)	903
LweI	GCATC	2 cut(s)	723, 1522
MaeII	ACGT	3 cut(s)	435, 1037, 1142
MaeIII	GTNAC	4 cut(s)	617, 718, 823, 1030
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	500, 540
MluCI	AATT	5 cut(s)	57, 511, 571, 1237, 1469
MlyI	GAGTC	2 cut(s)	194, 652
MmeI	TCCRAC	2 cut(s)	168, 1176
Mph1103I	ATGCAT	1 cut(s)	486
MroNI	GCCGGC	2 cut(s)	329, 443
MroXI	GAANNNNTTC	2 cut(s)	515, 887
MseI	TTAA	7 cut(s)	579, 633, 651, 738, 765, 1365, 1391
MslI	CAYNNNNRTG	3 cut(s)	489, 1071, 1274
MspI	CCGG	6 cut(s)	163, 179, 330, 388, 398, 444
MspR9I	CCNGG	5 cut(s)	163, 179, 389, 398, 399
Mva1269I	GAATGC	2 cut(s)	381, 985
MvnI	CGCG	2 cut(s)	342, 381
MwoI	GCNNNNNNNGC	6 cut(s)	10, 122, 339, 393, 422, 1443
NaeI	GCCGGC	2 cut(s)	331, 445
NciI	CCSGG	5 cut(s)	163, 179, 389, 398, 399
NcoI	CCATGG	1 cut(s)	235
NdeI	CATATG	1 cut(s)	1526
NdeII	GATC	1 cut(s)	165
NgoMIV	GCCGGC	2 cut(s)	329, 443
NlaIII	CATG	6 cut(s)	239, 488, 494, 848, 1070, 1273
NlaIV	GGNNCC	6 cut(s)	167, 194, 233, 241, 402, 497
NmeAIII	GCCGAG	2 cut(s)	451, 735
NmuCI	GTSAC	1 cut(s)	1030
NsiI	ATGCAT	1 cut(s)	486
PauI	GCGCGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	2 cut(s)	381, 985
PdiI	GCCGGC	2 cut(s)	331, 445
PdmI	GAANNNNTTC	2 cut(s)	515, 887
PfeI	GAWTC	4 cut(s)	702, 946, 1156, 1420
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	118, 442, 918
PleI	GAGTC	2 cut(s)	194, 652
PpsI	GAGTC	2 cut(s)	194, 652
PsiI	TTATAA	1 cut(s)	726
PspFI	CCCAGC	1 cut(s)	755
PspN4I	GGNNCC	6 cut(s)	167, 194, 233, 241, 402, 497
PspPI	GGNCC	5 cut(s)	192, 239, 360, 395, 401
PsuI	RGATCY	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	203
PteI	GCGCGC	1 cut(s)	379
RsaI	GTAC	3 cut(s)	434, 1163, 1358
RsaNI	GTAC	3 cut(s)	433, 1162, 1357
RseI	CAYNNNNRTG	3 cut(s)	489, 1071, 1274
SalI	GTCGAC	1 cut(s)	320
SaqAI	TTAA	7 cut(s)	579, 633, 651, 738, 765, 1365, 1391
SatI	GCNGC	3 cut(s)	117, 441, 917
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	5 cut(s)	192, 239, 360, 395, 401
SchI	GAGTC	2 cut(s)	194, 652
ScrFI	CCNGG	5 cut(s)	163, 179, 389, 398, 399
SduI	GDGCHC	2 cut(s)	500, 540
SfaNI	GCATC	2 cut(s)	723, 1522
SinI	GGWCC	2 cut(s)	192, 401
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	3 cut(s)	489, 1071, 1274
SmlI	CTYRAG	2 cut(s)	108, 218
SmoI	CTYRAG	2 cut(s)	108, 218
Sse9I	AATT	5 cut(s)	57, 511, 571, 1237, 1469
SsiI	CCGC	8 cut(s)	104, 117, 149, 274, 385, 441, 983, 1351
StyD4I	CCNGG	5 cut(s)	161, 177, 387, 396, 397
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	3 cut(s)	438, 1040, 1145
TaqI	TCGA	4 cut(s)	270, 321, 705, 891
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	5 cut(s)	57, 511, 571, 1237, 1469
TatI	WGTACW	1 cut(s)	1356
TauI	GCSGC	2 cut(s)	119, 443
TfiI	GAWTC	4 cut(s)	702, 946, 1156, 1420
Tru1I	TTAA	7 cut(s)	579, 633, 651, 738, 765, 1365, 1391
Tru9I	TTAA	7 cut(s)	579, 633, 651, 738, 765, 1365, 1391
TscAI	CASTG	2 cut(s)	36, 194
TseFI	GTSAC	1 cut(s)	1030
TseI	GCWGC	1 cut(s)	916
Tsp45I	GTSAC	1 cut(s)	1030
TspDTI	ATGAA	4 cut(s)	501, 809, 833, 1124
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	2 cut(s)	36, 194
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	192, 401
XapI	RAATTY	2 cut(s)	511, 1469
XmaI	CCCGGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	2 cut(s)	515, 887
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.