Rmu_sc0004156.1_g000009

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004156.1
Physical Location & Seq
Reverse (-)
56468 .. 57937
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004156.1_g000009.1.cds

Sequence Viewer

Length: 1470 bp
atgttcactctgcttcgcaaaaccccatcactgaaaaacccagaacccagtttctcaattccactacatcacaacctaaccacctcaacaccaccacaaccgcctcaagacgccgcctttgccacccttatcctcaaaaccgacccgcaatcgctcccccggatcctccacgacccgaacatccactggacccccgactccgtcaacaaaaccctcaaacgcctctggaaccatggccccaaagccctcgtcttcttcaaaaccctcgaccgccaccccacctacaccccctcctcctcctcctacgaccacgccgtcgacatcgccggccgtttacgcgactacaagtccctctgggccttcgtcgcccgaatgcgcgcccgccgggtcggcccgggtccgagaaccttcgccatcatcgccgagaggtacgtcgccgccggcaaacccgatagagctgtcaaagtttttctctctatgcatgaacatgggtgccctcaggatttgaattctttcaatcctgttcttgatgtgctctgtaaagctaagcgagttgaaaaggcttacaatttgtttaaggtgtttcggggaagatttagagctgattgtgttagttacaatgtgattgttaatgggtggtgtttgattaagaggtctcctaaggctttagaggttttgagggagatggttgagagaggaatcgagccgagtttggttacttataatgggatgcttaaagggtatcttagagctgggcaggttaaggaggcgtgggagttttttttggaaatgaagaagaggaagtgtgagattgatgttgttacttataccactctggttcatgggtttggtgttgtcggggaggttaagaaggcaaggaagattttcgatgggatggttgaggagggggtgctgccttcggttgcgacttacaatgcgttgattcaggttttgtgtaagaaggatagcgtggagaatgcggtggtggtttttgaggagatggtgagtaagggttatgtgcctaatgtgaccacgtataatgtgttgattagagggctttgtcatgctggtgatatggagagggggatggagttgatggggaggatgaagggtgatgagtgtgagccaagtgttcagacgtataatgttgtgattcggtacttttgtgatgatggggagattgataaggcgttggatgtgtttgagaagatgggtaggggagagtgcttgcctaatttggatacatacaatgtgttgattagtgccatgtttgtgaggaagaaacctgaagatttgttagtggcagggaagttgctgattgagatggttgatagaggatttttgccccgcaagtacacttttaatcgggttctggatgggcttttgttaactggtaatcaaggttttgcaaaagagattctgagattgcagagcaaatgcggccgtcttcctcgtcaggtgaaattataa

Protein Analysis

489

Amino Acids

55.45

Weight (kDa)

9.38

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74900
fragaria_vesca FvH4_5g16320
malus_domestica MD06G1181800.v1.1 MD14G1187700.v1.1
prunus_persica Prupe.5G180100_v2.0.a1
pyrus_communis pycom06g16080 pycom14g15560
rosa_chinensis RchiOBHm_Chr7g0179811
rosa_laevigata RLG00000005322
rosa_multiflora Rmu_sc0001754.1_g000006 Rmu_sc0004156.1_g000009
rosa_roxburghii Rroxscaffold_3G00273450
rosa_rugosa Rorug06G0428500
rosa_samantha Rh7CG029100 Rh7DG028600
rosa_wichuraiana Rw7G002250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 723, 1468
AasI GACNNNNNNGTC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 748
AccB1I GGYRCC 1 cut(s) 492
AccI GTMKAC 1 cut(s) 318
AccII CGCG 2 cut(s) 339, 378
AciI CCGC 9 cut(s) 101, 114, 146, 271, 382, 438, 980, 1348, 1440
AclWI GGATC 2 cut(s) 157, 170
AcoI YGGCCR 2 cut(s) 328, 1441
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 1308
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 431, 1160, 1355
AgsI TTSAA 4 cut(s) 259, 508, 517, 557
AhdI GACNNNNNGTC 1 cut(s) 346
AluBI AGCT 4 cut(s) 458, 545, 602, 752
AluI AGCT 4 cut(s) 458, 545, 602, 752
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 2 cut(s) 157, 170
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 5 cut(s) 235, 328, 357, 391, 1441
ApeKI GCWGC 1 cut(s) 913
ApoI RAATTY 1 cut(s) 508
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 234, 266
Asp700I GAANNNNTTC 2 cut(s) 512, 884
AspLEI GCGC 2 cut(s) 378, 380
AspS9I GGNCC 5 cut(s) 189, 236, 357, 392, 398
AsuC2I CCSGG 4 cut(s) 160, 386, 395, 396
AsuHPI GGTGA 3 cut(s) 1015, 1082, 1124
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 2 cut(s) 189, 398
AxyI CCTNAGG 2 cut(s) 498, 660
BaeGI GKGCMC 1 cut(s) 497
BaeI ACNNNNGTAYC 2 cut(s) 1150, 1183
BamHI GGATCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 492
BbsI GAAGAC 2 cut(s) 244, 1439
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 900
BceAI ACGGC 3 cut(s) 299, 315, 1428
BciVI GTATCC 1 cut(s) 1234
BcnI CCSGG 4 cut(s) 160, 386, 395, 396
BcoDI GTCTC 1 cut(s) 660
BfuAI ACCTGC 1 cut(s) 748
BfuI GTATCC 1 cut(s) 1234
BglI GCCNNNNNGGC 1 cut(s) 390
BisI GCNGC 4 cut(s) 114, 438, 914, 1441
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 4 cut(s) 115, 439, 915, 1442
Bme1390I CCNGG 4 cut(s) 160, 386, 395, 396
Bme18I GGWCC 2 cut(s) 189, 398
BmeRI GACNNNNNGTC 1 cut(s) 346
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 5 cut(s) 189, 236, 357, 392, 398
BmiI GGNNCC 6 cut(s) 164, 191, 230, 238, 399, 494
BmrFI CCNGG 4 cut(s) 160, 386, 395, 396
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 720
BmuI ACTGGG 1 cut(s) 42
BpiI GAAGAC 2 cut(s) 244, 1439
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 90
BpuMI CCSGG 4 cut(s) 160, 386, 395, 396
BsaAI YACGTR 1 cut(s) 1035
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 660
BsaJI CCNNGG 3 cut(s) 158, 232, 394
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse118I RCCGGY 2 cut(s) 326, 440
Bse1I ACTGG 3 cut(s) 48, 191, 1396
Bse21I CCTNAGG 2 cut(s) 498, 660
BseDI CCNNGG 3 cut(s) 158, 232, 394
BseGI GGATG 7 cut(s) 180, 735, 900, 1092, 1110, 1201, 1381
BseMII CTCAG 2 cut(s) 512, 1412
BseNI ACTGG 3 cut(s) 48, 191, 1396
BsePI GCGCGC 1 cut(s) 376
BseRI GAGGAG 5 cut(s) 283, 286, 289, 917, 1010
BseSI GKGCMC 1 cut(s) 497
BseX3I CGGCCG 2 cut(s) 328, 1441
BseXI GCAGC 1 cut(s) 900
BseYI CCCAGC 1 cut(s) 752
Bsh1236I CGCG 2 cut(s) 339, 378
Bsh1285I CGRYCG 3 cut(s) 271, 331, 1444
BshFI GGCC 5 cut(s) 237, 330, 359, 393, 1443
BshNI GGYRCC 1 cut(s) 492
BsiEI CGRYCG 3 cut(s) 271, 331, 1444
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 5 cut(s) 160, 327, 385, 395, 441
BslFI GGGAC 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 334
BsmI GAATGC 2 cut(s) 378, 982
BsnI GGCC 5 cut(s) 237, 330, 359, 393, 1443
Bso31I GGTCTC 1 cut(s) 660
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 2 cut(s) 497, 537
Bsp143I GATC 1 cut(s) 162
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 9 cut(s) 101, 114, 146, 271, 382, 438, 980, 1348, 1440
BspANI GGCC 5 cut(s) 237, 330, 359, 393, 1443
BspCNI CTCAG 2 cut(s) 511, 1413
BspFNI CGCG 2 cut(s) 339, 378
BspLI GGNNCC 6 cut(s) 164, 191, 230, 238, 399, 494
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 2 cut(s) 157, 170
BspT107I GGYRCC 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 660
BsrFI RCCGGY 2 cut(s) 326, 440
BsrI ACTGG 3 cut(s) 48, 191, 1396
BssAI RCCGGY 2 cut(s) 326, 440
BssECI CCNNGG 3 cut(s) 158, 232, 394
BssHII GCGCGC 1 cut(s) 376
BssMI GATC 1 cut(s) 162
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 791
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 1035
BstC8I GCNNGC 5 cut(s) 328, 378, 382, 442, 1229
BstDEI CTNAG 5 cut(s) 498, 546, 660, 746, 1421
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 7 cut(s) 180, 735, 900, 1092, 1110, 1201, 1381
BstFNI CGCG 2 cut(s) 339, 378
BstHHI GCGC 2 cut(s) 378, 380
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 1 cut(s) 162
BstMCI CGRYCG 3 cut(s) 271, 331, 1444
BstMWI GCNNNNNNNGC 6 cut(s) 119, 336, 365, 390, 419, 1440
BstSCI CCNGG 4 cut(s) 158, 384, 393, 394
BstSLI GKGCMC 1 cut(s) 497
BstUI CGCG 2 cut(s) 339, 378
BstV1I GCAGC 1 cut(s) 900
BstV2I GAAGAC 2 cut(s) 244, 1439
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BstZI CGGCCG 2 cut(s) 328, 1441
Bsu36I CCTNAGG 2 cut(s) 498, 660
BsuI GTATCC 1 cut(s) 1234
BsuRI GGCC 5 cut(s) 237, 330, 359, 393, 1443
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 2 cut(s) 307, 403
BtsCI GGATG 7 cut(s) 180, 735, 900, 1092, 1110, 1201, 1381
BtsIMutI CAGTG 2 cut(s) 29, 184
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 5 cut(s) 328, 378, 382, 442, 1229
CfoI GCGC 2 cut(s) 378, 380
Cfr10I RCCGGY 2 cut(s) 326, 440
Cfr13I GGNCC 5 cut(s) 189, 236, 357, 392, 398
Cfr9I CCCGGG 1 cut(s) 394
CseI GACGC 1 cut(s) 119
Csp6I GTAC 3 cut(s) 430, 1159, 1354
CviAII CATG 6 cut(s) 233, 482, 488, 842, 1064, 1267
CviQI GTAC 3 cut(s) 430, 1159, 1354
DdeI CTNAG 5 cut(s) 498, 546, 660, 746, 1421
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DrdI GACNNNNNNGTC 1 cut(s) 314
DriI GACNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 314
EaeI YGGCCR 2 cut(s) 328, 1441
EagI CGGCCG 2 cut(s) 328, 1441
Eam1104I CTCTTC 1 cut(s) 791
Eam1105I GACNNNNNGTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 791
EclXI CGGCCG 2 cut(s) 328, 1441
Eco130I CCWWGG 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 660
Eco47I GGWCC 2 cut(s) 189, 398
Eco52I CGGCCG 2 cut(s) 328, 1441
Eco57I CTGAAG 1 cut(s) 1308
Eco81I CCTNAGG 2 cut(s) 498, 660
Eco88I CYCGRG 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 6 cut(s) 236, 485, 491, 845, 1067, 1270
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 1 cut(s) 334
FatI CATG 6 cut(s) 232, 481, 487, 841, 1063, 1266
FauI CCCGC 3 cut(s) 153, 389, 1355
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 114, 438, 914, 1441
FokI GGATG 7 cut(s) 167, 742, 907, 1099, 1117, 1208, 1388
Fsp4HI GCNGC 4 cut(s) 114, 438, 914, 1441
GlaI GCGC 2 cut(s) 377, 379
GluI GCNGC 4 cut(s) 114, 438, 914, 1441
GsaI CCCAGC 1 cut(s) 756
HaeIII GGCC 5 cut(s) 237, 330, 359, 393, 1443
HapII CCGG 5 cut(s) 160, 327, 385, 395, 441
HgaI GACGC 1 cut(s) 119
HhaI GCGC 2 cut(s) 378, 380
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 6 cut(s) 236, 485, 491, 845, 1067, 1270
Hin6I GCGC 2 cut(s) 376, 378
HinP1I GCGC 2 cut(s) 376, 378
HincII GTYRAC 3 cut(s) 205, 319, 1389
HindII GTYRAC 3 cut(s) 205, 319, 1389
HinfI GANTC 5 cut(s) 197, 699, 943, 1153, 1417
HpaI GTTAAC 1 cut(s) 1389
HpaII CCGG 5 cut(s) 160, 327, 385, 395, 441
HphI GGTGA 3 cut(s) 1015, 1082, 1124
Hpy166II GTNNAC 6 cut(s) 6, 205, 319, 335, 1356, 1389
Hpy188I TCNGA 3 cut(s) 402, 1137, 1422
Hpy188III TCNNGA 5 cut(s) 107, 226, 500, 527, 1373
Hpy8I GTNNAC 6 cut(s) 6, 205, 319, 335, 1356, 1389
Hpy99I CGWCG 3 cut(s) 320, 368, 437
HpyAV CCTTC 6 cut(s) 370, 418, 865, 927, 955, 1102
HpyCH4IV ACGT 3 cut(s) 432, 1034, 1139
HpyCH4V TGCA 3 cut(s) 481, 1409, 1429
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 336, 365, 390, 419, 1440
HpyF3I CTNAG 5 cut(s) 498, 546, 660, 746, 1421
HpySE526I ACGT 3 cut(s) 432, 1034, 1139
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 6 cut(s) 236, 485, 491, 845, 1067, 1270
HspAI GCGC 2 cut(s) 376, 378
KroI GCCGGC 2 cut(s) 326, 440
KroNI GCCGGC 2 cut(s) 328, 442
KspAI GTTAAC 1 cut(s) 1389
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 159
Lsp1109I GCAGC 1 cut(s) 900
LweI GCATC 1 cut(s) 720
MaeII ACGT 3 cut(s) 432, 1034, 1139
MaeIII GTNAC 4 cut(s) 614, 715, 820, 1027
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 2 cut(s) 497, 537
MluCI AATT 5 cut(s) 57, 508, 568, 1234, 1463
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 1173
Mph1103I ATGCAT 1 cut(s) 483
MroNI GCCGGC 2 cut(s) 326, 440
MroXI GAANNNNTTC 2 cut(s) 512, 884
MseI TTAA 8 cut(s) 576, 630, 648, 735, 762, 867, 1362, 1388
MslI CAYNNNNRTG 3 cut(s) 486, 1068, 1271
MspI CCGG 5 cut(s) 160, 327, 385, 395, 441
MspR9I CCNGG 4 cut(s) 160, 386, 395, 396
Mva1269I GAATGC 2 cut(s) 378, 982
MvnI CGCG 2 cut(s) 339, 378
MwoI GCNNNNNNNGC 6 cut(s) 119, 336, 365, 390, 419, 1440
NaeI GCCGGC 2 cut(s) 328, 442
NciI CCSGG 4 cut(s) 160, 386, 395, 396
NcoI CCATGG 1 cut(s) 232
NdeII GATC 1 cut(s) 162
NgoMIV GCCGGC 2 cut(s) 326, 440
NlaIII CATG 6 cut(s) 236, 485, 491, 845, 1067, 1270
NlaIV GGNNCC 6 cut(s) 164, 191, 230, 238, 399, 494
NmeAIII GCCGAG 2 cut(s) 448, 732
NmuCI GTSAC 1 cut(s) 1027
NsiI ATGCAT 1 cut(s) 483
PauI GCGCGC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 2 cut(s) 378, 982
PdiI GCCGGC 2 cut(s) 328, 442
PdmI GAANNNNTTC 2 cut(s) 512, 884
PfeI GAWTC 4 cut(s) 699, 943, 1153, 1417
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 4 cut(s) 115, 439, 915, 1442
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 1035
PsiI TTATAA 2 cut(s) 723, 1468
PspFI CCCAGC 1 cut(s) 752
PspN4I GGNNCC 6 cut(s) 164, 191, 230, 238, 399, 494
PspPI GGNCC 5 cut(s) 189, 236, 357, 392, 398
PsuI RGATCY 1 cut(s) 162
PsyI GACNNNGTC 1 cut(s) 200
PteI GCGCGC 1 cut(s) 376
RsaI GTAC 3 cut(s) 431, 1160, 1355
RsaNI GTAC 3 cut(s) 430, 1159, 1354
RseI CAYNNNNRTG 3 cut(s) 486, 1068, 1271
SalI GTCGAC 1 cut(s) 317
SaqAI TTAA 8 cut(s) 576, 630, 648, 735, 762, 867, 1362, 1388
SatI GCNGC 4 cut(s) 114, 438, 914, 1441
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 5 cut(s) 189, 236, 357, 392, 398
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 160, 386, 395, 396
SduI GDGCHC 2 cut(s) 497, 537
SfaNI GCATC 1 cut(s) 720
SinI GGWCC 2 cut(s) 189, 398
SmaI CCCGGG 1 cut(s) 396
SmiMI CAYNNNNRTG 3 cut(s) 486, 1068, 1271
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 5 cut(s) 57, 508, 568, 1234, 1463
SsiI CCGC 9 cut(s) 101, 114, 146, 271, 382, 438, 980, 1348, 1440
StyD4I CCNGG 4 cut(s) 158, 384, 393, 394
StyI CCWWGG 1 cut(s) 232
TaiI ACGT 3 cut(s) 435, 1037, 1142
TaqI TCGA 4 cut(s) 267, 318, 702, 888
TasI AATT 5 cut(s) 57, 508, 568, 1234, 1463
TatI WGTACW 1 cut(s) 1353
TauI GCSGC 3 cut(s) 116, 440, 1443
TfiI GAWTC 4 cut(s) 699, 943, 1153, 1417
Tru1I TTAA 8 cut(s) 576, 630, 648, 735, 762, 867, 1362, 1388
Tru9I TTAA 8 cut(s) 576, 630, 648, 735, 762, 867, 1362, 1388
TscAI CASTG 2 cut(s) 36, 191
TseFI GTSAC 1 cut(s) 1027
TseI GCWGC 1 cut(s) 913
Tsp45I GTSAC 1 cut(s) 1027
TspDTI ATGAA 4 cut(s) 498, 806, 830, 1121
TspGWI ACGGA 1 cut(s) 190
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 2 cut(s) 36, 191
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 189, 398
XapI RAATTY 1 cut(s) 508
XmaI CCCGGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 2 cut(s) 512, 884
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.