FvH4_5g16570

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012810
Physical Location & Seq
Reverse (-)
9443940 .. 9446028
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16570.t1

Sequence Viewer

Length: 651 bp
ATGGGAAACTGCCAAGCCATTGATGCAGCAACTTTGGTGATACAACATCCAAATGGGAAGGTTGAGAAGTGCTATGGGGCAGTGAATGCTAGTGAGGTCATGAAGATGAACCCTGGTCATTATGTTGCTCTTCTCATCTCCACCACTCTCTGTCCAAATCCCAAATCCAAAGCCAATGGTGCTGATCAAAATAAAGGTGATGATGATCATAGTCACAAGGTTTCTGATACCACCAATGAGAAGAAAACTACTTCTACTACTGGTTCAGTTCGAATCACACGCATCAAGCTTCTCAGGCCAACCGATACTCTTGTTCTTGGCCAGGTTTACAGACTCATCACCACTCAAGAGGTCATGAAGGGTCTGTGGGCAAAGAAACAAGCAAAGGGGAAGAGATCAAACCAGTTTGAGCCACTAACAGCAGAGAGGTTGCAGAGAGAGACAGCAGCAGCAGCTAGCAGAAGATCTGAGGCTGCTTCTGAGCTGGACAAGGACAACAACCAGGTGATGACTAAAAGTGATAGACGCCACCACCGACCAAGAACATCACCCTCATCATCAGGGAGCAGTGGTAATAGTCAGGCTGCCGCAACAGCTAGACCAAGAACATGGCAACCTTCATTGCAAAGCATCTCAGAAGCTGCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

217

Amino Acids

23.47

Weight (kDa)

9.85

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 213 6.1e-24 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50090 AT5G50090 AT5G50090
fragaria_vesca FvH4_5g16570
malus_domestica MD06G1178700.v1.1 MD14G1185100.v1.1
prunus_persica Prupe.5G177800_v2.0.a1
pyrus_communis pycom06g15880 pycom14g15400
rosa_chinensis RchiOBHm_Chr7g0179551
rosa_multiflora Rmu_sc0005329.1_g000004
rosa_roxburghii Rroxscaffold_3G00273720
rosa_rugosa Rorug06G0425500
rosa_samantha Rh7AG025300 Rh7BG024800 Rh7CG026100 Rh7DG026100
rosa_wichuraiana Rw7G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 588
AcoI YGGCCR 1 cut(s) 319
AcyI GRCGYC 1 cut(s) 526
AjnI CCWGG 3 cut(s) 112, 321, 501
AluBI AGCT 6 cut(s) 289, 455, 484, 596, 641, 648
AluI AGCT 6 cut(s) 289, 455, 484, 596, 641, 648
Alw26I GTCTC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 2 cut(s) 296, 319
ApeKI GCWGC 7 cut(s) 26, 446, 449, 452, 473, 584, 641
AsuHPI GGTGA 5 cut(s) 49, 209, 331, 517, 540
AsuII TTCGAA 1 cut(s) 271
AsuNHI GCTAGC 1 cut(s) 455
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BalI TGGCCA 1 cut(s) 321
BbvI GCAGC 7 cut(s) 38, 458, 460, 461, 464, 571, 628
BciT130I CCWGG 3 cut(s) 114, 323, 503
BclI TGATCA 2 cut(s) 184, 205
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 3 cut(s) 90, 456, 597
BglII AGATCT 1 cut(s) 464
BisI GCNGC 8 cut(s) 27, 447, 450, 453, 474, 585, 588, 642
BlsI GCNGC 8 cut(s) 28, 448, 451, 454, 475, 586, 589, 643
Bme1390I CCNGG 3 cut(s) 114, 323, 503
BmrFI CCNGG 3 cut(s) 114, 323, 503
BmsI GCATC 3 cut(s) 13, 291, 639
BmtI GCTAGC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 526
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bse1I ACTGG 2 cut(s) 265, 403
Bse3DI GCAATG 1 cut(s) 620
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 3 cut(s) 114, 323, 503
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 46
BseJI GATNNNNATC 1 cut(s) 204
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 4 cut(s) 307, 459, 471, 648
BseNI ACTGG 2 cut(s) 265, 403
BseXI GCAGC 7 cut(s) 38, 458, 460, 461, 464, 571, 628
BshFI GGCC 2 cut(s) 298, 321
BsmAI GTCTC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 2 cut(s) 298, 321
Bsp119I TTCGAA 1 cut(s) 271
Bsp143I GATC 4 cut(s) 184, 205, 395, 464
BspACI CCGC 1 cut(s) 588
BspANI GGCC 2 cut(s) 298, 321
BspCNI CTCAG 4 cut(s) 306, 460, 472, 647
BspHI TCATGA 2 cut(s) 99, 354
BspOI GCTAGC 1 cut(s) 459
BspQI GCTCTTC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 620
BsrI ACTGG 2 cut(s) 265, 403
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 4 cut(s) 184, 205, 395, 464
BssNI GRCGYC 1 cut(s) 526
Bst2UI CCWGG 3 cut(s) 114, 323, 503
Bst6I CTCTTC 2 cut(s) 135, 386
BstACI GRCGYC 1 cut(s) 526
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 457, 646
BstDEI CTNAG 4 cut(s) 293, 468, 480, 634
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 4 cut(s) 187, 208, 398, 467
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 4 cut(s) 184, 205, 395, 464
BstMWI GCNNNNNNNGC 6 cut(s) 23, 86, 179, 295, 452, 593
BstNI CCWGG 3 cut(s) 114, 323, 503
BstSCI CCNGG 3 cut(s) 112, 321, 501
BstV1I GCAGC 7 cut(s) 38, 458, 460, 461, 464, 571, 628
BstX2I RGATCY 1 cut(s) 464
BstXI CCANNNNNNTGG 1 cut(s) 609
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 2 cut(s) 298, 321
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 2 cut(s) 87, 574
BtsIMutI CAGTG 2 cut(s) 87, 574
Cac8I GCNNGC 2 cut(s) 457, 646
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 2 cut(s) 99, 354
CseI GACGC 1 cut(s) 534
CsiI ACCWGGT 1 cut(s) 501
CviAII CATG 3 cut(s) 100, 355, 609
DdeI CTNAG 4 cut(s) 293, 468, 480, 634
DpnI GATC 4 cut(s) 186, 207, 397, 466
DpnII GATC 4 cut(s) 184, 205, 395, 464
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 135, 386
EarI CTCTTC 2 cut(s) 135, 386
EcoRII CCWGG 3 cut(s) 112, 321, 501
FaeI CATG 3 cut(s) 103, 358, 612
FaiI YATR 6 cut(s) 75, 101, 123, 210, 356, 610
FatI CATG 3 cut(s) 99, 354, 608
FbaI TGATCA 2 cut(s) 184, 205
Fnu4HI GCNGC 8 cut(s) 27, 447, 450, 453, 474, 585, 588, 642
FokI GGATG 1 cut(s) 33
Fsp4HI GCNGC 8 cut(s) 27, 447, 450, 453, 474, 585, 588, 642
FspBI CTAG 3 cut(s) 90, 456, 597
GluI GCNGC 8 cut(s) 27, 447, 450, 453, 474, 585, 588, 642
HaeIII GGCC 2 cut(s) 298, 321
HgaI GACGC 1 cut(s) 534
Hin1I GRCGYC 1 cut(s) 526
Hin1II CATG 3 cut(s) 103, 358, 612
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 2 cut(s) 273, 333
HphI GGTGA 5 cut(s) 49, 209, 331, 517, 540
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 226, 469, 481, 637
Hpy188III TCNNGA 3 cut(s) 100, 347, 355
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 3 cut(s) 52, 352, 627
HpyCH4V TGCA 3 cut(s) 26, 433, 625
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 86, 179, 295, 452, 593
HpyF3I CTNAG 4 cut(s) 293, 468, 480, 634
Hsp92I GRCGYC 1 cut(s) 526
Hsp92II CATG 3 cut(s) 103, 358, 612
Ksp22I TGATCA 2 cut(s) 184, 205
Kzo9I GATC 4 cut(s) 184, 205, 395, 464
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 564
Lsp1109I GCAGC 7 cut(s) 38, 458, 460, 461, 464, 571, 628
LweI GCATC 3 cut(s) 13, 291, 639
MabI ACCWGGT 1 cut(s) 501
MaeI CTAG 3 cut(s) 90, 456, 597
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 186, 207, 397, 466
MboI GATC 4 cut(s) 184, 205, 395, 464
MboII GAAGA 5 cut(s) 115, 122, 253, 403, 474
MflI RGATCY 1 cut(s) 464
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 1 cut(s) 327
MnlI CCTC 5 cut(s) 88, 343, 420, 463, 562
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 51, 104
Msp20I TGGCCA 1 cut(s) 321
MspR9I CCNGG 3 cut(s) 114, 323, 503
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 3 cut(s) 114, 323, 503
MwoI GCNNNNNNNGC 6 cut(s) 23, 86, 179, 295, 452, 593
NdeII GATC 4 cut(s) 184, 205, 395, 464
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 3 cut(s) 103, 358, 612
NmuCI GTSAC 1 cut(s) 212
NspV TTCGAA 1 cut(s) 271
PagI TCATGA 2 cut(s) 99, 354
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 8 cut(s) 28, 448, 451, 454, 475, 586, 589, 643
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
Psp6I CCWGG 3 cut(s) 112, 321, 501
PspGI CCWGG 3 cut(s) 112, 321, 501
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 464
RseI CAYNNNNRTG 2 cut(s) 51, 104
SapI GCTCTTC 1 cut(s) 135
SatI GCNGC 8 cut(s) 27, 447, 450, 453, 474, 585, 588, 642
Sau3AI GATC 4 cut(s) 184, 205, 395, 464
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 3 cut(s) 114, 323, 503
SexAI ACCWGGT 1 cut(s) 501
SfaNI GCATC 3 cut(s) 13, 291, 639
SfuI TTCGAA 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 51, 104
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
SsiI CCGC 1 cut(s) 588
SspMI CTAG 3 cut(s) 90, 456, 597
StyD4I CCNGG 3 cut(s) 112, 321, 501
TaqI TCGA 1 cut(s) 271
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 1 cut(s) 273
TscAI CASTG 2 cut(s) 87, 574
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 7 cut(s) 26, 446, 449, 452, 473, 584, 641
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 116, 122, 371, 609
TspRI CASTG 2 cut(s) 87, 574
XspI CTAG 3 cut(s) 90, 456, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.