Domain of unknown function (DUF4228)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50090 AT5G50090 AT5G50090 |
| fragaria_vesca | FvH4_5g16570 |
| malus_domestica | MD06G1178700.v1.1 MD14G1185100.v1.1 |
| prunus_persica | Prupe.5G177800_v2.0.a1 |
| pyrus_communis | pycom06g15880 pycom14g15400 |
| rosa_chinensis | RchiOBHm_Chr7g0179551 |
| rosa_multiflora | Rmu_sc0005329.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00273720 |
| rosa_rugosa | Rorug06G0425500 |
| rosa_samantha | Rh7AG025300 Rh7BG024800 Rh7CG026100 Rh7DG026100 |
| rosa_wichuraiana | Rw7G002030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 498 |
| AcoI | YGGCCR | 2 cut(s) | 115, 289 |
| AcsI | RAATTY | 2 cut(s) | 68, 193 |
| AcuI | CTGAAG | 1 cut(s) | 219 |
| AdeI | CACNNNGTG | 1 cut(s) | 150 |
| AfaI | GTAC | 2 cut(s) | 426, 547 |
| AgsI | TTSAA | 1 cut(s) | 199 |
| AjnI | CCWGG | 4 cut(s) | 112, 378, 474, 551 |
| AluBI | AGCT | 2 cut(s) | 259, 460 |
| AluI | AGCT | 2 cut(s) | 259, 460 |
| AoxI | GGCC | 4 cut(s) | 115, 266, 289, 594 |
| ApeKI | GCWGC | 5 cut(s) | 26, 394, 434, 515, 568 |
| ApoI | RAATTY | 2 cut(s) | 68, 193 |
| AsuHPI | GGTGA | 4 cut(s) | 301, 334, 370, 421 |
| BaeGI | GKGCMC | 2 cut(s) | 155, 501 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 267, 300 |
| BalI | TGGCCA | 2 cut(s) | 117, 291 |
| BanI | GGYRCC | 1 cut(s) | 498 |
| BbsI | GAAGAC | 1 cut(s) | 110 |
| BbvI | GCAGC | 5 cut(s) | 38, 406, 446, 527, 580 |
| BciT130I | CCWGG | 4 cut(s) | 114, 380, 476, 553 |
| BglII | AGATCT | 1 cut(s) | 443 |
| BisI | GCNGC | 5 cut(s) | 27, 395, 435, 516, 569 |
| BlsI | GCNGC | 5 cut(s) | 28, 396, 436, 517, 570 |
| BmcAI | AGTACT | 2 cut(s) | 426, 547 |
| Bme1390I | CCNGG | 4 cut(s) | 114, 380, 476, 553 |
| BmiI | GGNNCC | 1 cut(s) | 500 |
| BmrFI | CCNGG | 4 cut(s) | 114, 380, 476, 553 |
| BmsI | GCATC | 2 cut(s) | 13, 594 |
| BpiI | GAAGAC | 1 cut(s) | 110 |
| BpmI | CTGGAG | 1 cut(s) | 482 |
| BpuEI | CTTGAG | 1 cut(s) | 300 |
| Bse1I | ACTGG | 2 cut(s) | 422, 543 |
| BseBI | CCWGG | 4 cut(s) | 114, 380, 476, 553 |
| BseGI | GGATG | 1 cut(s) | 46 |
| BseMII | CTCAG | 4 cut(s) | 277, 438, 447, 603 |
| BseNI | ACTGG | 2 cut(s) | 422, 543 |
| BseSI | GKGCMC | 2 cut(s) | 155, 501 |
| BseXI | GCAGC | 5 cut(s) | 38, 406, 446, 527, 580 |
| BshFI | GGCC | 4 cut(s) | 117, 268, 291, 596 |
| BshNI | GGYRCC | 1 cut(s) | 498 |
| BsnI | GGCC | 4 cut(s) | 117, 268, 291, 596 |
| Bsp1286I | GDGCHC | 2 cut(s) | 155, 501 |
| Bsp143I | GATC | 2 cut(s) | 96, 443 |
| BspANI | GGCC | 4 cut(s) | 117, 268, 291, 596 |
| BspCNI | CTCAG | 4 cut(s) | 276, 439, 448, 602 |
| BspHI | TCATGA | 1 cut(s) | 99 |
| BspLI | GGNNCC | 1 cut(s) | 500 |
| BspT107I | GGYRCC | 1 cut(s) | 498 |
| BsrI | ACTGG | 2 cut(s) | 422, 543 |
| BssMI | GATC | 2 cut(s) | 96, 443 |
| Bst2UI | CCWGG | 4 cut(s) | 114, 380, 476, 553 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 356 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 1 cut(s) | 351 |
| BstDEI | CTNAG | 4 cut(s) | 263, 447, 456, 589 |
| BstF5I | GGATG | 1 cut(s) | 46 |
| BstKTI | GATC | 2 cut(s) | 99, 446 |
| BstMBI | GATC | 2 cut(s) | 96, 443 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 23, 249, 265, 548 |
| BstNI | CCWGG | 4 cut(s) | 114, 380, 476, 553 |
| BstSCI | CCNGG | 4 cut(s) | 112, 378, 474, 551 |
| BstSLI | GKGCMC | 2 cut(s) | 155, 501 |
| BstV1I | GCAGC | 5 cut(s) | 38, 406, 446, 527, 580 |
| BstV2I | GAAGAC | 1 cut(s) | 110 |
| BstX2I | RGATCY | 1 cut(s) | 443 |
| BstYI | RGATCY | 1 cut(s) | 443 |
| BsuRI | GGCC | 4 cut(s) | 117, 268, 291, 596 |
| BtsCI | GGATG | 1 cut(s) | 46 |
| Cac8I | GCNNGC | 1 cut(s) | 351 |
| CciI | TCATGA | 1 cut(s) | 99 |
| CsiI | ACCWGGT | 2 cut(s) | 378, 474 |
| Csp6I | GTAC | 2 cut(s) | 425, 546 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 363, 398 |
| CviAII | CATG | 3 cut(s) | 100, 488, 564 |
| CviQI | GTAC | 2 cut(s) | 425, 546 |
| DdeI | CTNAG | 4 cut(s) | 263, 447, 456, 589 |
| DpnI | GATC | 2 cut(s) | 98, 445 |
| DpnII | GATC | 2 cut(s) | 96, 443 |
| DraIII | CACNNNGTG | 1 cut(s) | 150 |
| EaeI | YGGCCR | 2 cut(s) | 115, 289 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 356 |
| EarI | CTCTTC | 2 cut(s) | 57, 356 |
| Eco57I | CTGAAG | 1 cut(s) | 219 |
| EcoRII | CCWGG | 4 cut(s) | 112, 378, 474, 551 |
| FaeI | CATG | 3 cut(s) | 103, 491, 567 |
| FaiI | YATR | 6 cut(s) | 41, 101, 123, 254, 489, 565 |
| FatI | CATG | 3 cut(s) | 99, 487, 563 |
| Fnu4HI | GCNGC | 5 cut(s) | 27, 395, 435, 516, 569 |
| FokI | GGATG | 1 cut(s) | 33 |
| Fsp4HI | GCNGC | 5 cut(s) | 27, 395, 435, 516, 569 |
| GluI | GCNGC | 5 cut(s) | 27, 395, 435, 516, 569 |
| GsuI | CTGGAG | 1 cut(s) | 482 |
| HaeIII | GGCC | 4 cut(s) | 117, 268, 291, 596 |
| Hin1II | CATG | 3 cut(s) | 103, 491, 567 |
| HindIII | AAGCTT | 1 cut(s) | 257 |
| HphI | GGTGA | 4 cut(s) | 301, 334, 370, 421 |
| Hpy166II | GTNNAC | 1 cut(s) | 298 |
| Hpy188I | TCNGA | 3 cut(s) | 448, 457, 592 |
| Hpy188III | TCNNGA | 3 cut(s) | 100, 317, 558 |
| Hpy8I | GTNNAC | 1 cut(s) | 298 |
| HpyAV | CCTTC | 2 cut(s) | 322, 460 |
| HpyCH4V | TGCA | 2 cut(s) | 26, 89 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 23, 249, 265, 548 |
| HpyF3I | CTNAG | 4 cut(s) | 263, 447, 456, 589 |
| Hsp92II | CATG | 3 cut(s) | 103, 491, 567 |
| Kzo9I | GATC | 2 cut(s) | 96, 443 |
| Lsp1109I | GCAGC | 5 cut(s) | 38, 406, 446, 527, 580 |
| LweI | GCATC | 2 cut(s) | 13, 594 |
| MabI | ACCWGGT | 2 cut(s) | 378, 474 |
| MalI | GATC | 2 cut(s) | 98, 445 |
| MboI | GATC | 2 cut(s) | 96, 443 |
| MboII | GAAGA | 4 cut(s) | 74, 115, 373, 453 |
| MfeI | CAATTG | 1 cut(s) | 18 |
| MflI | RGATCY | 1 cut(s) | 443 |
| MhlI | GDGCHC | 2 cut(s) | 155, 501 |
| MlsI | TGGCCA | 2 cut(s) | 117, 291 |
| MluCI | AATT | 4 cut(s) | 7, 18, 68, 193 |
| MluNI | TGGCCA | 2 cut(s) | 117, 291 |
| MnlI | CCTC | 7 cut(s) | 166, 313, 399, 442, 488, 583, 586 |
| Mox20I | TGGCCA | 2 cut(s) | 117, 291 |
| MscI | TGGCCA | 2 cut(s) | 117, 291 |
| MslI | CAYNNNNRTG | 1 cut(s) | 51 |
| Msp20I | TGGCCA | 2 cut(s) | 117, 291 |
| MspR9I | CCNGG | 4 cut(s) | 114, 380, 476, 553 |
| MunI | CAATTG | 1 cut(s) | 18 |
| MvaI | CCWGG | 4 cut(s) | 114, 380, 476, 553 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 23, 249, 265, 548 |
| NdeII | GATC | 2 cut(s) | 96, 443 |
| NlaIII | CATG | 3 cut(s) | 103, 491, 567 |
| NlaIV | GGNNCC | 1 cut(s) | 500 |
| PagI | TCATGA | 1 cut(s) | 99 |
| PkrI | GCNGC | 5 cut(s) | 28, 396, 436, 517, 570 |
| Psp6I | CCWGG | 4 cut(s) | 112, 378, 474, 551 |
| PspGI | CCWGG | 4 cut(s) | 112, 378, 474, 551 |
| PspN4I | GGNNCC | 1 cut(s) | 500 |
| PsuI | RGATCY | 1 cut(s) | 443 |
| RsaI | GTAC | 2 cut(s) | 426, 547 |
| RsaNI | GTAC | 2 cut(s) | 425, 546 |
| RseI | CAYNNNNRTG | 1 cut(s) | 51 |
| SatI | GCNGC | 5 cut(s) | 27, 395, 435, 516, 569 |
| Sau3AI | GATC | 2 cut(s) | 96, 443 |
| ScaI | AGTACT | 2 cut(s) | 426, 547 |
| ScrFI | CCNGG | 4 cut(s) | 114, 380, 476, 553 |
| SduI | GDGCHC | 2 cut(s) | 155, 501 |
| SetI | ASST | 8 cut(s) | 149, 261, 324, 360, 384, 462, 480, 557 |
| SexAI | ACCWGGT | 2 cut(s) | 378, 474 |
| SfaNI | GCATC | 2 cut(s) | 13, 594 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 51 |
| SmlI | CTYRAG | 1 cut(s) | 315 |
| SmoI | CTYRAG | 1 cut(s) | 315 |
| Sse9I | AATT | 4 cut(s) | 7, 18, 68, 193 |
| StyD4I | CCNGG | 4 cut(s) | 112, 378, 474, 551 |
| TasI | AATT | 4 cut(s) | 7, 18, 68, 193 |
| TatI | WGTACW | 2 cut(s) | 424, 545 |
| TseI | GCWGC | 5 cut(s) | 26, 394, 434, 515, 568 |
| TspDTI | ATGAA | 2 cut(s) | 116, 341 |
| XapI | RAATTY | 2 cut(s) | 68, 193 |
| ZrmI | AGTACT | 2 cut(s) | 426, 547 |