Rh7CG026100

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012810
Physical Location & Seq
Forward (+)
1865191 .. 1866272
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG026100.1

Sequence Viewer

Length: 363 bp
ATGGGAAATTGCCAAGCCATAGATGCAGCAACTTTGGTGATACAACACCCAAATGGGAAGGTCGAGAAGTTCTATGGGGCAGTGAGTGCTAGTGAGGTCATGAAGATGAACCCTGGTCACTATGTTGCTCTTCTCATCTCCACCACACTCTGTCCCTCATCAAATCCCAAATCCAAAACCAATGGTCCTGATAATAATGCTGGTGATGATCATGATCACAAGAATTCTGATATGACCAATGAGAAGAAGACTAGTTCTAGTACTGGTTCAGTTCGAATCACACGCATCAAGCTTCTCAGGCCAACTGATACTCTTGTTCTTGGCCAAGTTTACAGACTCATCACCACTCAAGGTGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

120

Amino Acids

12.93

Weight (kDa)

7.81

Isoelectric Point (pI)

16.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 116 1.1e-17 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50090 AT5G50090 AT5G50090
fragaria_vesca FvH4_5g16570
malus_domestica MD06G1178700.v1.1 MD14G1185100.v1.1
prunus_persica Prupe.5G177800_v2.0.a1
pyrus_communis pycom06g15880 pycom14g15400
rosa_chinensis RchiOBHm_Chr7g0179551
rosa_multiflora Rmu_sc0005329.1_g000004
rosa_roxburghii Rroxscaffold_3G00273720
rosa_rugosa Rorug06G0425500
rosa_samantha Rh7AG025300 Rh7BG024800 Rh7CG026100 Rh7DG026100
rosa_wichuraiana Rw7G002030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 223
AfaI GTAC 1 cut(s) 262
AhlI ACTAGT 1 cut(s) 251
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
AoxI GGCC 2 cut(s) 299, 322
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 49, 215, 334
AsuII TTCGAA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 185
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BalI TGGCCA 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 2 cut(s) 208, 214
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 3 cut(s) 90, 252, 258
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 13, 294
BpiI GAAGAC 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 213
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 38
BshFI GGCC 2 cut(s) 301, 324
BslFI GGGAC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 2 cut(s) 301, 324
Bsp119I TTCGAA 1 cut(s) 274
Bsp143I GATC 2 cut(s) 208, 214
BspANI GGCC 2 cut(s) 301, 324
BspCNI CTCAG 1 cut(s) 309
BspHI TCATGA 2 cut(s) 99, 211
BspQI GCTCTTC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 274
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 2 cut(s) 208, 214
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 296
BstKTI GATC 2 cut(s) 211, 217
BstMBI GATC 2 cut(s) 208, 214
BstMWI GCNNNNNNNGC 3 cut(s) 23, 86, 298
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 254
BsuRI GGCC 2 cut(s) 301, 324
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
CciI TCATGA 2 cut(s) 99, 211
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 261
CviAII CATG 2 cut(s) 100, 212
CviJI RGCY 4 cut(s) 17, 292, 301, 324
CviKI_1 RGCY 4 cut(s) 17, 292, 301, 324
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 210, 216
DpnII GATC 2 cut(s) 208, 214
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 2 cut(s) 103, 215
FaiI YATR 6 cut(s) 20, 75, 101, 123, 213, 233
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 99, 211
FbaI TGATCA 2 cut(s) 208, 214
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 3 cut(s) 90, 252, 258
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 2 cut(s) 301, 324
Hin1II CATG 2 cut(s) 103, 215
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 2 cut(s) 276, 336
HphI GGTGA 3 cut(s) 49, 215, 334
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 4 cut(s) 64, 100, 188, 212
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 86, 298
HpyF3I CTNAG 1 cut(s) 296
Hsp92II CATG 2 cut(s) 103, 215
Ksp22I TGATCA 2 cut(s) 208, 214
Kzo9I GATC 2 cut(s) 208, 214
LguI GCTCTTC 1 cut(s) 135
LpnPI CCDG 6 cut(s) 99, 126, 186, 201, 249, 283
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 13, 294
MaeI CTAG 3 cut(s) 90, 252, 258
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 210, 216
MboI GATC 2 cut(s) 208, 214
MboII GAAGA 4 cut(s) 115, 122, 256, 259
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 2 cut(s) 7, 223
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 2 cut(s) 88, 166
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 51, 104
Msp20I TGGCCA 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 23, 86, 298
NdeII GATC 2 cut(s) 208, 214
NlaIII CATG 2 cut(s) 103, 215
NmuCI GTSAC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 274
PagI TCATGA 2 cut(s) 99, 211
PciSI GCTCTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspPI GGNCC 1 cut(s) 185
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 2 cut(s) 51, 104
SapI GCTCTTC 1 cut(s) 135
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 208, 214
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 114
SetI ASST 4 cut(s) 63, 99, 294, 355
SfaNI GCATC 2 cut(s) 13, 294
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 2 cut(s) 51, 104
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
SpeI ACTAGT 1 cut(s) 251
Sse9I AATT 2 cut(s) 7, 223
SspMI CTAG 3 cut(s) 90, 252, 258
StyD4I CCNGG 1 cut(s) 112
TaqI TCGA 2 cut(s) 63, 274
TasI AATT 2 cut(s) 7, 223
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 1 cut(s) 276
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 116, 122
TspRI CASTG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 223
XspI CTAG 3 cut(s) 90, 252, 258
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.