FvH4_5g17000

Eukaryotic peptide chain release factor GTP-binding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
9682055 .. 9689456
7402 bp
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UTR
Exon/CDS
Intron
FvH4_5g17000.t3

Sequence Viewer

Length: 1554 bp
ATGGATATTGAGGAGGAAATCCGGTCGCTGCAGCTGGATTCAGCAGAAGATAATGGGGATGTAAATCCAGAAGCTGCAAATCTGGATGTCGAGAAGTCGGATGATAAGATGGAGGAAGGTGATGATAAGATGGAGGAAGGTGATGGTAAGATGGAGGAAGATTCTGTTGACCCCGTGGCACATGAGCCAAAAGTAAAGGAGAAGGAAGAACAACATGACGAGGATGAAATAAATAAGAAGAGGCACTTGAATGTTGTTTTTATTGGCCATGTGGACGCTGGAAAGTCAACTACGGGAGGTCAAATCCTTTTCCTTAGTGGTCAGGTTGATGATCGTACAATTCAAAAATATGAAAAAGAAGCGAAAGACAAAAGTAGGGAGAGCTGGTATATGGCGTATATCATGGATACCAATGAAGAAGAGAGGCTTAAGGGTAAAACTGTTGAAGTTGGACGAGCACATTTTGAAACCGAGACAACTCGATTTACGATTTTGGATGCACCAGGTCACAAAAGTTATGTACCAAATATGATTAGTGGTGCATCTCAGGCTGATATAGGAGTACTGGTAATATCTGCTCGGAAAGGAGAATTTGAAACAGGGTATGAGAGAGGTGGACAGACCCGTGAACATGTTCAGCTTGCAAAAACATTGGGAGTGTCTAAACTGCTTGTTGTTGTCAATAAAATGGACGATCCTACTGTGAACTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTACCATTCCTTAAGACATCAGGCTACAACGTGAAGAAAGATGTGCAGTTCCTACCAATATCAGGTCTTATGGGTACAAACATGAAAACAAGATTGAATAAAGAAATTTGTTCATGGTGGGATGGCCCCTGCCTTTTTGAAGCCCTTGATGCTATTGAAGTTCCTCTACGGGACCCGAAAGGTCCATTCAGGTTGCCCATCATAGATAAATTCAAGGACATGGGAACTACTGTTATGGGGAAAGTGGAATCCGGTTCGGTGCGTGAAGGCGATTCACTGGTTGTCATGCCAAATAAGGCTCATGTGAAAGTGCTTGCTATATTCATTGATGAAGATAGGGTCAAATATGCTGGACCTGGTGAAAATCTTCGGGTTAGGTTATCAGGTATCGATGATGAGGACATACTGGCAGGTTTTGTCTTGTCAAGTGTGGCTAATCCAATACCTGCTGTTACTGAGTTTTATGCGCAGTTGCAGATCCTTGAGTTGCTGGAAAATGCAATCTTTACACCTGGATACAAAGCTGTCCTGCATATTCATGCTGTTGTTGAGGAATGTGAGATTGTTGATCTGATTGAGGAAATTGATATGAAGACTAAGAAACCTAAGAAGAAGAAGCCTCTTTTTGTAAAGAATGGTGCTGTAATTAAATGCCGGATTCAGGTGATTAACATGATATGCATGGAGAAGTTTGCCGATTTTCCCCAACTTGGAAGGTTTACTCTTCGTACTGAAGGTAAAACTATTGCTGTGGGAAAAGTAATCGATGCTCCATCGAAGAAAAGTAAACAATCTTCGACAAACTAA

Protein Analysis

518

Amino Acids

57.91

Weight (kDa)

5.16

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 80 - 284 2.1e-48 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 324 - 390 9.4e-10 Elongation factor Tu domain 2
GTP_EFTU_D3 PF03143 397 - 504 5e-24 Elongation factor Tu C-terminal domain
GTP-eEF1A_C PF22594 402 - 503 6.6e-29 GTP-eEF1A C-terminal domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1215
Acc36I ACCTGC 2 cut(s) 1148, 1201
Acc65I GGTACC 1 cut(s) 748
AccB1I GGYRCC 1 cut(s) 748
AclWI GGATC 2 cut(s) 689, 1219
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 3 cut(s) 590, 852, 956
AcuI CTGAAG 1 cut(s) 1500
AfaI GTAC 6 cut(s) 337, 522, 564, 750, 823, 1477
AfiI CCNNNNNNNGG 3 cut(s) 809, 1408, 1457
AflII CTTAAG 2 cut(s) 428, 758
AflIII ACRYGT 1 cut(s) 631
AgsI TTSAA 9 cut(s) 250, 344, 446, 467, 596, 844, 887, 905, 961
AjnI CCWGG 3 cut(s) 502, 1102, 1258
AluBI AGCT 5 cut(s) 34, 74, 384, 640, 1271
AluI AGCT 5 cut(s) 34, 74, 384, 640, 1271
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 2 cut(s) 689, 1219
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 2 cut(s) 265, 871
ApeKI GCWGC 3 cut(s) 28, 31, 74
ApoI RAATTY 3 cut(s) 590, 852, 956
Asp700I GAANNNNTTC 2 cut(s) 633, 1113
Asp718I GGTACC 1 cut(s) 748
AspLEI GCGC 1 cut(s) 1216
AspS9I GGNCC 4 cut(s) 872, 919, 929, 1100
AsuHPI GGTGA 4 cut(s) 131, 152, 1118, 1423
AvaII GGWCC 3 cut(s) 919, 929, 1100
BalI TGGCCA 1 cut(s) 267
BanI GGYRCC 1 cut(s) 748
BarI GAAGNNNNNNTAC 3 cut(s) 897, 929, 1525
BbsI GAAGAC 1 cut(s) 1346
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 3 cut(s) 15, 43, 61
BccI CCATC 8 cut(s) 103, 124, 137, 145, 739, 863, 953, 1528
BciT130I CCWGG 3 cut(s) 504, 1104, 1260
BciVI GTATCC 2 cut(s) 400, 1256
BcoDI GTCTC 1 cut(s) 467
BfmI CTRYAG 1 cut(s) 29
BfrI CTTAAG 2 cut(s) 428, 758
BfuAI ACCTGC 2 cut(s) 1148, 1201
BfuI GTATCC 2 cut(s) 400, 1256
BisI GCNGC 3 cut(s) 29, 32, 75
BlsI GCNGC 3 cut(s) 30, 33, 76
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 3 cut(s) 504, 1104, 1260
Bme18I GGWCC 3 cut(s) 919, 929, 1100
BmgT120I GGNCC 4 cut(s) 872, 919, 929, 1100
BmiI GGNNCC 4 cut(s) 750, 874, 920, 921
BmrFI CCNGG 3 cut(s) 504, 1104, 1260
BmsI GCATC 4 cut(s) 487, 551, 886, 1504
BpiI GAAGAC 1 cut(s) 1346
BpuEI CTTGAG 1 cut(s) 1250
Bsa29I ATCGAT 2 cut(s) 1137, 1512
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 2 cut(s) 21, 998
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 552, 582
Bsc4I CCNNNNNNNGG 3 cut(s) 809, 1408, 1457
Bse1I ACTGG 4 cut(s) 570, 713, 1029, 1158
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 3 cut(s) 504, 1104, 1260
BseCI ATCGAT 2 cut(s) 1137, 1512
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 6 cut(s) 64, 91, 106, 229, 502, 874
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 3 cut(s) 809, 1408, 1457
BseMII CTCAG 2 cut(s) 560, 1194
BseNI ACTGG 4 cut(s) 570, 713, 1029, 1158
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 15, 43, 61
BsgI GTGCAG 1 cut(s) 812
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 267, 873
BshNI GGYRCC 1 cut(s) 748
BshVI ATCGAT 2 cut(s) 1137, 1512
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 460
BsiSI CCGG 3 cut(s) 22, 999, 1402
BslFI GGGAC 1 cut(s) 932
BslI CCNNNNNNNGG 3 cut(s) 809, 1408, 1457
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 932
BsnI GGCC 2 cut(s) 267, 873
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 4 cut(s) 331, 694, 1224, 1315
BspANI GGCC 2 cut(s) 267, 873
BspCNI CTCAG 2 cut(s) 559, 1195
BspDI ATCGAT 2 cut(s) 1137, 1512
BspLI GGNNCC 4 cut(s) 750, 874, 920, 921
BspMAI CTGCAG 1 cut(s) 33
BspMI ACCTGC 2 cut(s) 1148, 1201
BspPI GGATC 2 cut(s) 689, 1219
BspT107I GGYRCC 1 cut(s) 748
BspTI CTTAAG 2 cut(s) 428, 758
BsrI ACTGG 4 cut(s) 570, 713, 1029, 1158
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 4 cut(s) 331, 694, 1224, 1315
Bst2UI CCWGG 3 cut(s) 504, 1104, 1260
Bst4CI ACNGT 3 cut(s) 442, 703, 979
Bst6I CTCTTC 3 cut(s) 233, 414, 1476
BstAFI CTTAAG 2 cut(s) 428, 758
BstC8I GCNNGC 2 cut(s) 642, 1062
BstDEI CTNAG 5 cut(s) 314, 546, 1203, 1344, 1353
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 6 cut(s) 64, 91, 106, 229, 502, 874
BstHHI GCGC 1 cut(s) 1216
BstKTI GATC 4 cut(s) 334, 697, 1227, 1318
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 4 cut(s) 331, 694, 1224, 1315
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 2 cut(s) 548, 896
BstNI CCWGG 3 cut(s) 504, 1104, 1260
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 3 cut(s) 502, 1102, 1258
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 3 cut(s) 15, 43, 61
BstV2I GAAGAC 1 cut(s) 1346
BstX2I RGATCY 1 cut(s) 1224
BstYI RGATCY 1 cut(s) 1224
Bsu15I ATCGAT 2 cut(s) 1137, 1512
BsuI GTATCC 2 cut(s) 400, 1256
BsuRI GGCC 2 cut(s) 267, 873
BsuTUI ATCGAT 2 cut(s) 1137, 1512
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 6 cut(s) 64, 91, 106, 229, 502, 874
BtsIMutI CAGTG 1 cut(s) 1022
BveI ACCTGC 2 cut(s) 1148, 1201
Cac8I GCNNGC 2 cut(s) 642, 1062
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 1216
Cfr13I GGNCC 4 cut(s) 872, 919, 929, 1100
ClaI ATCGAT 2 cut(s) 1137, 1512
CseI GACGC 1 cut(s) 284
CsiI ACCWGGT 2 cut(s) 502, 1102
Csp6I GTAC 6 cut(s) 336, 521, 563, 749, 822, 1476
CviQI GTAC 6 cut(s) 336, 521, 563, 749, 822, 1476
DdeI CTNAG 5 cut(s) 314, 546, 1203, 1344, 1353
DpnI GATC 4 cut(s) 333, 696, 1226, 1317
DpnII GATC 4 cut(s) 331, 694, 1224, 1315
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 3 cut(s) 233, 414, 1476
EarI CTCTTC 3 cut(s) 233, 414, 1476
Eco47I GGWCC 3 cut(s) 919, 929, 1100
Eco57I CTGAAG 1 cut(s) 1500
EcoO109I RGGNCCY 1 cut(s) 919
EcoRII CCWGG 3 cut(s) 502, 1102, 1258
EcoT22I ATGCAT 1 cut(s) 1430
FalI AAGNNNNNCTT 4 cut(s) 230, 262, 411, 443
FaqI GGGAC 1 cut(s) 932
Fnu4HI GCNGC 3 cut(s) 29, 32, 75
FokI GGATG 6 cut(s) 71, 98, 113, 236, 509, 881
Fsp4HI GCNGC 3 cut(s) 29, 32, 75
FspI TGCGCA 1 cut(s) 1215
GlaI GCGC 1 cut(s) 1215
GluI GCNGC 3 cut(s) 29, 32, 75
HaeIII GGCC 2 cut(s) 267, 873
HapII CCGG 3 cut(s) 22, 999, 1402
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 1216
Hin6I GCGC 1 cut(s) 1214
HinP1I GCGC 1 cut(s) 1214
HincII GTYRAC 2 cut(s) 169, 288
HindII GTYRAC 2 cut(s) 169, 288
HinfI GANTC 6 cut(s) 38, 161, 737, 995, 1019, 1405
HpaII CCGG 3 cut(s) 22, 999, 1402
HphI GGTGA 4 cut(s) 131, 152, 1118, 1423
Hpy166II GTNNAC 8 cut(s) 169, 274, 288, 617, 629, 706, 1467, 1535
Hpy188I TCNGA 3 cut(s) 100, 582, 1320
Hpy188III TCNNGA 3 cut(s) 68, 83, 91
Hpy8I GTNNAC 8 cut(s) 169, 274, 288, 617, 629, 706, 1467, 1535
HpyAV CCTTC 6 cut(s) 110, 131, 196, 1007, 1455, 1475
HpyCH4III ACNGT 3 cut(s) 442, 703, 979
HpyCH4IV ACGT 1 cut(s) 777
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 896
HpyF3I CTNAG 5 cut(s) 314, 546, 1203, 1344, 1353
HpySE526I ACGT 1 cut(s) 777
HspAI GCGC 1 cut(s) 1214
KflI GGGWCCC 1 cut(s) 919
KpnI GGTACC 1 cut(s) 752
Kzo9I GATC 4 cut(s) 331, 694, 1224, 1315
LmnI GCTCC 1 cut(s) 1522
Lsp1109I GCAGC 3 cut(s) 15, 43, 61
LweI GCATC 4 cut(s) 487, 551, 886, 1504
MabI ACCWGGT 2 cut(s) 502, 1102
MaeII ACGT 1 cut(s) 777
MaeIII GTNAC 2 cut(s) 506, 1198
MalI GATC 4 cut(s) 333, 696, 1226, 1317
MboI GATC 4 cut(s) 331, 694, 1224, 1315
MflI RGATCY 1 cut(s) 1224
MhlI GDGCHC 1 cut(s) 460
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 7 cut(s) 339, 590, 732, 852, 956, 1329, 1392
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 746
MmeI TCCRAC 2 cut(s) 78, 430
Mox20I TGGCCA 1 cut(s) 267
Mph1103I ATGCAT 1 cut(s) 1430
MroXI GAANNNNTTC 2 cut(s) 633, 1113
MscI TGGCCA 1 cut(s) 267
MseI TTAA 4 cut(s) 429, 759, 1395, 1416
MslI CAYNNNNRTG 2 cut(s) 249, 1284
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 34
MspCI CTTAAG 2 cut(s) 428, 758
MspI CCGG 3 cut(s) 22, 999, 1402
MspR9I CCNGG 3 cut(s) 504, 1104, 1260
MvaI CCWGG 3 cut(s) 504, 1104, 1260
MwoI GCNNNNNNNGC 2 cut(s) 548, 896
NdeII GATC 4 cut(s) 331, 694, 1224, 1315
NlaIV GGNNCC 4 cut(s) 750, 874, 920, 921
NmuCI GTSAC 1 cut(s) 506
NsbI TGCGCA 1 cut(s) 1215
NsiI ATGCAT 1 cut(s) 1430
NspI RCATGY 1 cut(s) 635
PciI ACATGT 1 cut(s) 631
PdmI GAANNNNTTC 2 cut(s) 633, 1113
PfeI GAWTC 5 cut(s) 38, 161, 995, 1019, 1405
PkrI GCNGC 3 cut(s) 30, 33, 76
PleI GAGTC 1 cut(s) 745
PpsI GAGTC 1 cut(s) 745
PpuMI RGGWCCY 1 cut(s) 919
PscI ACATGT 1 cut(s) 631
Psp5II RGGWCCY 1 cut(s) 919
Psp6I CCWGG 3 cut(s) 502, 1102, 1258
PspGI CCWGG 3 cut(s) 502, 1102, 1258
PspN4I GGNNCC 4 cut(s) 750, 874, 920, 921
PspPI GGNCC 4 cut(s) 872, 919, 929, 1100
PspPPI RGGWCCY 1 cut(s) 919
PstI CTGCAG 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 1224
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 6 cut(s) 337, 522, 564, 750, 823, 1477
RsaNI GTAC 6 cut(s) 336, 521, 563, 749, 822, 1476
RseI CAYNNNNRTG 2 cut(s) 249, 1284
SaqAI TTAA 4 cut(s) 429, 759, 1395, 1416
SatI GCNGC 3 cut(s) 29, 32, 75
Sau3AI GATC 4 cut(s) 331, 694, 1224, 1315
Sau96I GGNCC 4 cut(s) 872, 919, 929, 1100
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 1 cut(s) 746
ScrFI CCNGG 3 cut(s) 504, 1104, 1260
SduI GDGCHC 1 cut(s) 460
SexAI ACCWGGT 2 cut(s) 502, 1102
SfaNI GCATC 4 cut(s) 487, 551, 886, 1504
SfcI CTRYAG 1 cut(s) 29
SinI GGWCC 3 cut(s) 919, 929, 1100
SmiMI CAYNNNNRTG 2 cut(s) 249, 1284
SmlI CTYRAG 3 cut(s) 428, 758, 1229
SmoI CTYRAG 3 cut(s) 428, 758, 1229
Sse9I AATT 7 cut(s) 339, 590, 732, 852, 956, 1329, 1392
StyD4I CCNGG 3 cut(s) 502, 1102, 1258
TaaI ACNGT 3 cut(s) 442, 703, 979
TaiI ACGT 1 cut(s) 780
TaqI TCGA 6 cut(s) 90, 481, 1137, 1512, 1523, 1544
TasI AATT 7 cut(s) 339, 590, 732, 852, 956, 1329, 1392
TatI WGTACW 1 cut(s) 562
TfiI GAWTC 5 cut(s) 38, 161, 995, 1019, 1405
Tru1I TTAA 4 cut(s) 429, 759, 1395, 1416
Tru9I TTAA 4 cut(s) 429, 759, 1395, 1416
TscAI CASTG 1 cut(s) 1029
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 3 cut(s) 28, 31, 74
Tsp45I GTSAC 1 cut(s) 506
TspRI CASTG 1 cut(s) 1029
Vha464I CTTAAG 2 cut(s) 428, 758
VpaK11BI GGWCC 3 cut(s) 919, 929, 1100
XapI RAATTY 3 cut(s) 590, 852, 956
XceI RCATGY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmnI GAANNNNTTC 2 cut(s) 633, 1113
ZrmI AGTACT 1 cut(s) 564
Zsp2I ATGCAT 1 cut(s) 1430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.