MD06G1224200.v1.1

Eukaryotic peptide chain release factor GTP-binding

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
35469683 .. 35477473
7791 bp
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UTR
Exon/CDS
Intron
MD06G1224200.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGGATATCGAGGAGGAAATCCGATCGTTACAGCTTGATTCAGCAGCAGAAGATAATGGGGTTGTTAATCCGGACGAAGCAAAGCCGGAAGTAGAGAATGATAATAAGATGGAGGAAGATTCCAGGGAAGAGATTCGTAAACAGTCTGATAAGTCAGTTGTAGTTGAGCATAAAGGGAAGGAGAAGGAAACCCCGGATCCAGAAGAAGAGCATGATGACATGGAATTAGATAAGAAGAGGCACTTGAATGTTGTTTTTATTGGCCATGTTGATGCTGGAAAGTCCACAACAGGAGGCCAAATACTTTTTCTTAGTGGTCAGGTTGATGATCGTACAATCCAAAAATACGAAAAAGAAGCAAAGGACAAAAGTAGGGAAAGCTGGTATATGGCTTATATTATGGACACCAATGAAGAAGAGAGAGTTAAGGGTAAAACAGTTGAAGTTGGGCGGGCCCACTTTGAAACCGAGACATCAAGATTCACGATTTTGGATGCACCTGGCCACAAAAGTTATGTTCCAAATATGATCAGTGGTGCATCTCAAGCTGATATAGGAGTACTGGTAATTTCTGCTCGTAAAGGAGAATTTGAAACCGGGTATGAGAGGGGTGGGCAGACCCGTGAACACGTTCAACTTGCTAAGACATTGGGTGTGTCCAAGATGCTTGTTGTTGTAAATAAAATGGATGAACCCACTGTGAACTGGTCAAAAGAAAGGTACGATGAAATTGTTACAAAAATGATACCATTCCTTAAAGCATCAGGCTACAATGTGAAAAAAGATGTGCAATTCCTACCTATATCTGGCCTGATGGGAACAAATATGAAAACCAGATTGGATAAAAGTGTATGTTCGTGGTGGGATGGTCCCTGCCTTTTTGAAGCCCTTGATTCTATTGAAGTTCCTCTACGAGATCCTAAAGGTCCATTCAGGATGCCTATCATAGACAAATTCAAGGACATGGGAACAGTTGTTATGGGCAAAGTGGAATCTGGGTCCGTGCGTGAAGGGGATTCATTGTTTGTCATGCCAAATAAGGTCCCAGTGAAAGCTGTTGCTATATACATTGATGAAGATAGGGTGAAACGTGCGGGCCCAGGTGAAAATCTACGGGTTAGATTATCAGGCATTGATGATGAGGATATATTGTCAGGCTTTGTTGTGTCGAGTGTTGCAAAGCCAATACCTGCCGTTACAGAATTTTTCGCCCAGTTGCAGATTCTTGAACTGCTTGACAATGCAATTTTGACGGCTGGCTATAAAGCTGTCCTGCATATTCACTCAATTGTTGAAGAATGTGAGATTATTGAGCTTGTAAGTCAAATTGATACGAAGACGAAGAAACCTATGAAAAAGCATATTCGTTTTGTCAAGAATGGTGCCATTGTTGTGTGCAAGATTCAGGTCAGCAACACGATATGCATTGAGAAGTTTGCGGACTTTCCGCAACTTGGGAGGTTTACTCTTCGTACTGAAGGTTACTTCTACGTTCTGCAGGAAAAACTATTGCAGTTGGAAAAGTGA

Protein Analysis

509

Amino Acids

57.26

Weight (kDa)

5.32

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 79 - 281 5.7e-49 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 323 - 389 5.2e-09 Elongation factor Tu domain 2
GTP_EFTU_D3 PF03143 396 - 494 1.4e-16 Elongation factor Tu C-terminal domain
GTP-eEF1A_C PF22594 402 - 494 3.3e-25 GTP-eEF1A C-terminal domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1198
AccB1I GGYRCC 1 cut(s) 1382
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 4 cut(s) 451, 1094, 1439, 1448
AclWI GGATC 3 cut(s) 191, 204, 911
AcoI YGGCCR 2 cut(s) 262, 502
AcsI RAATTY 3 cut(s) 587, 953, 1202
AcuI CTGAAG 1 cut(s) 1497
AfaI GTAC 4 cut(s) 334, 561, 722, 1474
AfiI CCNNNNNNNGG 2 cut(s) 806, 1454
AflIII ACRYGT 1 cut(s) 628
AjnI CCWGG 3 cut(s) 122, 499, 1099
AjuI GAANNNNNNNTTGG 4 cut(s) 291, 323, 821, 853
AluBI AGCT 6 cut(s) 34, 381, 548, 1055, 1268, 1315
AluI AGCT 6 cut(s) 34, 381, 548, 1055, 1268, 1315
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 3 cut(s) 191, 204, 911
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 6 cut(s) 262, 295, 453, 502, 808, 1096
ApaI GGGCCC 2 cut(s) 457, 1100
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 3 cut(s) 587, 953, 1202
Asp700I GAANNNNTTC 2 cut(s) 132, 630
AspS9I GGNCC 8 cut(s) 453, 454, 869, 926, 999, 1042, 1096, 1097
AsuC2I CCSGG 2 cut(s) 194, 598
AsuHPI GGTGA 2 cut(s) 1096, 1115
AvaII GGWCC 4 cut(s) 869, 926, 999, 1042
BaeGI GKGCMC 2 cut(s) 457, 1100
BalI TGGCCA 2 cut(s) 264, 504
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 1382
BanII GRGCYC 2 cut(s) 457, 1100
BarI GAAGNNNNNNTAC 2 cut(s) 894, 926
BbsI GAAGAC 1 cut(s) 1343
BbvI GCAGC 1 cut(s) 56
BccI CCATC 3 cut(s) 103, 808, 860
BceAI ACGGC 2 cut(s) 1178, 1269
BciT130I CCWGG 3 cut(s) 124, 501, 1101
BclI TGATCA 1 cut(s) 528
BcnI CCSGG 2 cut(s) 194, 598
BcoDI GTCTC 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 1496
BfuAI ACCTGC 1 cut(s) 1198
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 5 cut(s) 124, 194, 501, 598, 1101
Bme18I GGWCC 4 cut(s) 869, 926, 999, 1042
BmgT120I GGNCC 8 cut(s) 453, 454, 869, 926, 999, 1042, 1096, 1097
BmiI GGNNCC 7 cut(s) 198, 455, 871, 1000, 1044, 1098, 1384
BmrFI CCNGG 5 cut(s) 124, 194, 501, 598, 1101
BmrI ACTGGG 2 cut(s) 1040, 1207
BmsI GCATC 6 cut(s) 262, 484, 548, 654, 770, 927
BmuI ACTGGG 2 cut(s) 1040, 1207
BpiI GAAGAC 1 cut(s) 1343
BplI GAGNNNNNCTC 2 cut(s) 1450, 1482
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 2 cut(s) 194, 598
BsaBI GATNNNNATC 1 cut(s) 941
BsaJI CCNNGG 3 cut(s) 123, 192, 1099
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 806, 1454
Bse1I ACTGG 4 cut(s) 567, 710, 1046, 1213
Bse8I GATNNNNATC 1 cut(s) 941
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 3 cut(s) 124, 501, 1101
BseDI CCNNGG 3 cut(s) 123, 192, 1099
BseGI GGATG 4 cut(s) 499, 694, 871, 942
BseJI GATNNNNATC 1 cut(s) 941
BseLI CCNNNNNNNGG 2 cut(s) 806, 1454
BseNI ACTGG 4 cut(s) 567, 710, 1046, 1213
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 2 cut(s) 457, 1100
BseXI GCAGC 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 6 cut(s) 264, 297, 455, 504, 810, 1098
BshNI GGYRCC 1 cut(s) 1382
BsiEI CGRYCG 1 cut(s) 26
BsiSI CCGG 4 cut(s) 71, 86, 194, 597
BslFI GGGAC 2 cut(s) 855, 1028
BslI CCNNNNNNNGG 2 cut(s) 806, 1454
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 855, 1028
BsnI GGCC 6 cut(s) 264, 297, 455, 504, 810, 1098
Bsp120I GGGCCC 2 cut(s) 453, 1096
Bsp1286I GDGCHC 2 cut(s) 457, 1100
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 5 cut(s) 23, 196, 328, 528, 916
BspACI CCGC 4 cut(s) 451, 1094, 1439, 1448
BspANI GGCC 6 cut(s) 264, 297, 455, 504, 810, 1098
BspEI TCCGGA 1 cut(s) 70
BspLI GGNNCC 7 cut(s) 198, 455, 871, 1000, 1044, 1098, 1384
BspMAI CTGCAG 1 cut(s) 1500
BspMI ACCTGC 1 cut(s) 1198
BspPI GGATC 3 cut(s) 191, 204, 911
BspQI GCTCTTC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 1382
BsrI ACTGG 4 cut(s) 567, 710, 1046, 1213
BssECI CCNNGG 3 cut(s) 123, 192, 1099
BssMI GATC 5 cut(s) 23, 196, 328, 528, 916
Bst2UI CCWGG 3 cut(s) 124, 501, 1101
Bst4CI ACNGT 4 cut(s) 144, 439, 700, 973
Bst6I CTCTTC 5 cut(s) 123, 201, 230, 411, 1473
BstC8I GCNNGC 3 cut(s) 453, 1096, 1258
BstDEI CTNAG 2 cut(s) 311, 642
BstF5I GGATG 4 cut(s) 499, 694, 871, 942
BstKTI GATC 5 cut(s) 26, 199, 331, 531, 919
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 5 cut(s) 23, 196, 328, 528, 916
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNI CCWGG 3 cut(s) 124, 501, 1101
BstSCI CCNGG 5 cut(s) 122, 192, 499, 596, 1099
BstSFI CTRYAG 1 cut(s) 1496
BstSLI GKGCMC 2 cut(s) 457, 1100
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 1343
BstX2I RGATCY 2 cut(s) 196, 916
BstYI RGATCY 2 cut(s) 196, 916
BsuRI GGCC 6 cut(s) 264, 297, 455, 504, 810, 1098
BtsCI GGATG 4 cut(s) 499, 694, 871, 942
BtsIMutI CAGTG 3 cut(s) 538, 696, 1053
BveI ACCTGC 1 cut(s) 1198
Cac8I GCNNGC 3 cut(s) 453, 1096, 1258
Cfr13I GGNCC 8 cut(s) 453, 454, 869, 926, 999, 1042, 1096, 1097
Csp6I GTAC 4 cut(s) 333, 560, 721, 1473
CviAII CATG 5 cut(s) 212, 220, 266, 964, 1030
CviQI GTAC 4 cut(s) 333, 560, 721, 1473
DdeI CTNAG 2 cut(s) 311, 642
DpnI GATC 5 cut(s) 25, 198, 330, 530, 918
DpnII GATC 5 cut(s) 23, 196, 328, 528, 916
EaeI YGGCCR 2 cut(s) 262, 502
Eam1104I CTCTTC 5 cut(s) 123, 201, 230, 411, 1473
EarI CTCTTC 5 cut(s) 123, 201, 230, 411, 1473
Eco24I GRGCYC 2 cut(s) 457, 1100
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 4 cut(s) 869, 926, 999, 1042
Eco57I CTGAAG 1 cut(s) 1497
EcoO109I RGGNCCY 1 cut(s) 1042
EcoRII CCWGG 3 cut(s) 122, 499, 1099
EcoRV GATATC 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 1427
EcoT38I GRGCYC 2 cut(s) 457, 1100
FaeI CATG 5 cut(s) 215, 223, 269, 967, 1033
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 2 cut(s) 855, 1028
FatI CATG 5 cut(s) 211, 219, 265, 963, 1029
FauI CCCGC 2 cut(s) 444, 1087
FbaI TGATCA 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 4 cut(s) 506, 701, 878, 949
FriOI GRGCYC 2 cut(s) 457, 1100
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 6 cut(s) 264, 297, 455, 504, 810, 1098
HapII CCGG 4 cut(s) 71, 86, 194, 597
Hin1II CATG 5 cut(s) 215, 223, 269, 967, 1033
HinfI GANTC 9 cut(s) 38, 119, 133, 480, 893, 992, 1016, 1222, 1402
HpaII CCGG 4 cut(s) 71, 86, 194, 597
HphI GGTGA 2 cut(s) 1096, 1115
Hpy166II GTNNAC 5 cut(s) 140, 285, 626, 703, 1464
Hpy188I TCNGA 2 cut(s) 23, 148
Hpy188III TCNNGA 7 cut(s) 71, 200, 477, 484, 934, 1226, 1375
Hpy8I GTNNAC 5 cut(s) 140, 285, 626, 703, 1464
HpyAV CCTTC 4 cut(s) 172, 178, 1004, 1472
HpyCH4III ACNGT 4 cut(s) 144, 439, 700, 973
HpyCH4IV ACGT 3 cut(s) 630, 1090, 1491
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 2 cut(s) 311, 642
HpySE526I ACGT 3 cut(s) 630, 1090, 1491
Hsp92II CATG 5 cut(s) 215, 223, 269, 967, 1033
Kpn2I TCCGGA 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 5 cut(s) 23, 196, 328, 528, 916
LguI GCTCTTC 1 cut(s) 201
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 6 cut(s) 262, 484, 548, 654, 770, 927
MaeII ACGT 3 cut(s) 630, 1090, 1491
MaeIII GTNAC 4 cut(s) 27, 733, 1195, 1481
MalI GATC 5 cut(s) 25, 198, 330, 530, 918
MboI GATC 5 cut(s) 23, 196, 328, 528, 916
MfeI CAATTG 1 cut(s) 1287
MflI RGATCY 2 cut(s) 196, 916
MhlI GDGCHC 2 cut(s) 457, 1100
MlsI TGGCCA 2 cut(s) 264, 504
MluNI TGGCCA 2 cut(s) 264, 504
MmeI TCCRAC 1 cut(s) 1497
MnlI CCTC 9 cut(s) 4, 7, 106, 231, 287, 600, 918, 1135, 1452
Mox20I TGGCCA 2 cut(s) 264, 504
Mph1103I ATGCAT 1 cut(s) 1427
MroI TCCGGA 1 cut(s) 70
MroXI GAANNNNTTC 2 cut(s) 132, 630
MscI TGGCCA 2 cut(s) 264, 504
MseI TTAA 3 cut(s) 66, 426, 756
MslI CAYNNNNRTG 3 cut(s) 246, 270, 1391
Msp20I TGGCCA 2 cut(s) 264, 504
MspI CCGG 4 cut(s) 71, 86, 194, 597
MspR9I CCNGG 5 cut(s) 124, 194, 501, 598, 1101
MunI CAATTG 1 cut(s) 1287
MvaI CCWGG 3 cut(s) 124, 501, 1101
MwoI GCNNNNNNNGC 1 cut(s) 545
NciI CCSGG 2 cut(s) 194, 598
NdeII GATC 5 cut(s) 23, 196, 328, 528, 916
NlaIII CATG 5 cut(s) 215, 223, 269, 967, 1033
NlaIV GGNNCC 7 cut(s) 198, 455, 871, 1000, 1044, 1098, 1384
NsiI ATGCAT 1 cut(s) 1427
PciSI GCTCTTC 1 cut(s) 201
PdmI GAANNNNTTC 2 cut(s) 132, 630
PfeI GAWTC 9 cut(s) 38, 119, 133, 480, 893, 992, 1016, 1222, 1402
PkrI GCNGC 1 cut(s) 46
Ple19I CGATCG 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 1042
Psp5II RGGWCCY 1 cut(s) 1042
Psp6I CCWGG 3 cut(s) 122, 499, 1099
PspGI CCWGG 3 cut(s) 122, 499, 1099
PspN4I GGNNCC 7 cut(s) 198, 455, 871, 1000, 1044, 1098, 1384
PspOMI GGGCCC 2 cut(s) 453, 1096
PspPI GGNCC 8 cut(s) 453, 454, 869, 926, 999, 1042, 1096, 1097
PspPPI RGGWCCY 1 cut(s) 1042
PstI CTGCAG 1 cut(s) 1500
PsuI RGATCY 2 cut(s) 196, 916
PvuI CGATCG 1 cut(s) 26
RsaI GTAC 4 cut(s) 334, 561, 722, 1474
RsaNI GTAC 4 cut(s) 333, 560, 721, 1473
RseI CAYNNNNRTG 3 cut(s) 246, 270, 1391
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 3 cut(s) 66, 426, 756
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 5 cut(s) 23, 196, 328, 528, 916
Sau96I GGNCC 8 cut(s) 453, 454, 869, 926, 999, 1042, 1096, 1097
ScaI AGTACT 1 cut(s) 561
ScrFI CCNGG 5 cut(s) 124, 194, 501, 598, 1101
SduI GDGCHC 2 cut(s) 457, 1100
SfaNI GCATC 6 cut(s) 262, 484, 548, 654, 770, 927
SfcI CTRYAG 1 cut(s) 1496
SinI GGWCC 4 cut(s) 869, 926, 999, 1042
SmiMI CAYNNNNRTG 3 cut(s) 246, 270, 1391
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
SsiI CCGC 4 cut(s) 451, 1094, 1439, 1448
StyD4I CCNGG 5 cut(s) 122, 192, 499, 596, 1099
TaaI ACNGT 4 cut(s) 144, 439, 700, 973
TaiI ACGT 3 cut(s) 633, 1093, 1494
TaqI TCGA 2 cut(s) 9, 1169
TatI WGTACW 1 cut(s) 559
TfiI GAWTC 9 cut(s) 38, 119, 133, 480, 893, 992, 1016, 1222, 1402
Tru1I TTAA 3 cut(s) 66, 426, 756
Tru9I TTAA 3 cut(s) 66, 426, 756
TscAI CASTG 3 cut(s) 538, 703, 1053
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 7 cut(s) 426, 705, 741, 842, 1008, 1089, 1367
TspGWI ACGGA 1 cut(s) 991
TspRI CASTG 3 cut(s) 538, 703, 1053
VpaK11BI GGWCC 4 cut(s) 869, 926, 999, 1042
XapI RAATTY 3 cut(s) 587, 953, 1202
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XmnI GAANNNNTTC 2 cut(s) 132, 630
ZrmI AGTACT 1 cut(s) 561
Zsp2I ATGCAT 1 cut(s) 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.