Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004512

Physical Location & Seq

Genomic Coordinates Forward (+)

1480518 .. 1488145

Gene Structure 7628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG019900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGAATAAGAAGAGGCACTTGAATGTTGTTTTTATTGGCCATGTGGATGCTGGAAAGTCAACAACAGGAGGTCAAATCCTTTTCCTTAGTGGTCAGGTTGATGATCGTACAATTCAAAAATATGAAAAAGAAGCGAAAGACAAAAGTAGGGAGAGCTGGTATATGGCATTTATCATGGATACCAATGAAGAAGAGAGGGCTAAGGGTAAAACTATTGAAGTTGGACGAGCACATTTTGAAACTGAGACAACTCGATTTACGATCTTGGATGCACCAGGTCACAAAAGTTATGTACCAAATATGATCAGTGGTGCATCTCAGGCTGATATAGGAGTACTGGTAATATCTGCCCGGAAAGGAGAATTTGAAACGGGGTATGAAAGAGGTGGACAGACCCGTGAACATGTTCAGCTTGCAAAAACTTTGGGAGTGTCTAAACTGCTTGTTGTTGTGAATAAAATGGATGATCTTACTGTGAACTGGTCAAAAGAAAGGTATGATGAAATTGAGTCGAAGATGGTACCATTCCTTAAGACATCAGGCTACAACGTGAAGAAAGATGTGCAGTTCATACCAATATCTGGTCTTCTTGGTACAAACATGAAAACTAGGTTGAGTAAAGAAACTTGTTCATGGTGGGATGGCCCCTGCCTTTTTGAAGCCCTTGATTCTATTGAAGTTCCTCTACGAGACCCTAAAGGTCCATTCAGGTTGCCTATCATAGATAAATTCAAGGACATGGGAACTACTGTTATGGGGAAAGTGGAATCTGGTTCAGTGCGTGAAGGGGATTCATTGATTATCATGCCAAATAAGGCTCAAGTGAAAGTTATTGGTATATTCATCGATGAAGATAGGGTCAAATATGCTGGACCTGGTGAAAATCTTCGAGTTAGGTTATCAGGTATCGACGACGAGGACATACTGTCAGGTTTTGTCTTGTCGAGTGTGGCAAATCCAATACCTGCTGTTACCGAGTTTTATGCGCAGTTGCAGATCCTTGAGTTGCTGGAAAATGCAATCTTTACACCTGGATACAAAGCTGTCCTGCATATTCACTCTGTTGTTGAGGAATGTGAGATCGTTGATCTGCTAGAGGAAATTGATATGAAGACTAAGAAACCTAAGAAGAAGAAGCCTCTTTTTGTGAAGAATGGTGCTGTTATTAAATGCCGGATTCAGGTGACCAACTTGATATGCATTGAGAAGTTCTCCGATTTTCCCCAACTTGGAAGGTTTACTCTTCGTACTGAAGGTAAAACTATTGCTGTGGGAAAAGTAATCGATGCTCCATCCAAGAAAAGTAAACGATCTTCGACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002184 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006464 GO:0006479 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0008213 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0018444 GO:0019538 GO:0022411 GO:0032259 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043412 GO:0043414 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

441

Amino Acids

49.3

Weight (kDa)

8.68

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	4 - 210	6.8e-50	Elongation factor Tu GTP binding domain
GTP_EFTU_D2	PF03144	248 - 314	6.3e-10	Elongation factor Tu domain 2
GTP_EFTU_D3	PF03143	321 - 428	1.2e-23	Elongation factor Tu C-terminal domain
GTP-eEF1A_C	PF22594	326 - 427	6e-30	GTP-eEF1A C-terminal domain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18070 AT1G18070 AT1G18070
fragaria_vesca	FvH4_5g17000 FvH4_5g17000 FvH4_5g17000 FvH4_5g17000 FvH4_5g17000 FvH4_5g17000
malus_domestica	MD06G1224200.v1.1 MD14G1233200.v1.1
prunus_persica	Prupe.5G229200_v2.0.a1 Prupe.5G229200_v2.0.a1 Prupe.5G229200_v2.0.a1 Prupe.5G229200_v2.0.a1 Prupe.5G229200_v2.0.a1
pyrus_communis	pycom06g19950
rosa_chinensis	RchiOBHm_Chr7g0178871
rosa_laevigata	RLG00000005398
rosa_multiflora	Rmu_sc0000888.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274490
rosa_rugosa	Rorug06G0420300 Rorug06G0420300 Rorug06G0420400 Rorug06G0420500 Rorug06G0420500 Rorug06G0420500
rosa_samantha	Rh7AG019800 Rh7BG019300 Rh7CG019900 Rh7DG019800
rosa_wichuraiana	Rw7G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	987
Acc36I	ACCTGC	1 cut(s)	973
Acc65I	GGTACC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	581
AclWI	GGATC	1 cut(s)	991
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	362, 728
AcuI	CTGAAG	1 cut(s)	1272
AfaI	GTAC	6 cut(s)	109, 294, 336, 522, 595, 1249
AfiI	CCNNNNNNNGG	3 cut(s)	581, 1180, 1229
AflII	CTTAAG	1 cut(s)	530
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	8 cut(s)	22, 116, 218, 239, 368, 659, 677, 733
AhdI	GACNNNNNGTC	1 cut(s)	925
AjnI	CCWGG	3 cut(s)	274, 874, 1030
AluBI	AGCT	3 cut(s)	156, 412, 1043
AluI	AGCT	3 cut(s)	156, 412, 1043
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	2 cut(s)	239, 684
AlwI	GGATC	1 cut(s)	991
AoxI	GGCC	2 cut(s)	37, 643
ApoI	RAATTY	2 cut(s)	362, 728
Asp700I	GAANNNNTTC	2 cut(s)	405, 885
Asp718I	GGTACC	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	988
AspS9I	GGNCC	3 cut(s)	644, 701, 872
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	890, 1195
AvaII	GGWCC	2 cut(s)	701, 872
BalI	TGGCCA	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	520
BarI	GAAGNNNNNNTAC	3 cut(s)	669, 701, 1297
BbsI	GAAGAC	2 cut(s)	578, 1118
Bbv12I	GWGCWC	1 cut(s)	232
BccI	CCATC	3 cut(s)	511, 635, 1300
BcgI	CGANNNNNNTGC	2 cut(s)	965, 999
BciT130I	CCWGG	3 cut(s)	276, 876, 1032
BciVI	GTATCC	2 cut(s)	172, 1028
BclI	TGATCA	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	239, 684
BfaI	CTAG	2 cut(s)	609, 1094
BfrI	CTTAAG	1 cut(s)	530
BfuAI	ACCTGC	1 cut(s)	973
BfuI	GTATCC	2 cut(s)	172, 1028
BmcAI	AGTACT	1 cut(s)	336
Bme1390I	CCNGG	4 cut(s)	276, 352, 876, 1032
Bme18I	GGWCC	2 cut(s)	701, 872
BmeRI	GACNNNNNGTC	1 cut(s)	925
BmgT120I	GGNCC	3 cut(s)	644, 701, 872
BmiI	GGNNCC	2 cut(s)	522, 646
BmrFI	CCNGG	4 cut(s)	276, 352, 876, 1032
BmsI	GCATC	4 cut(s)	37, 259, 323, 1276
BpiI	GAAGAC	2 cut(s)	578, 1118
BplI	GAGNNNNNCTC	2 cut(s)	1196, 1228
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	804, 1022
BpuMI	CCSGG	1 cut(s)	352
Bsa29I	ATCGAT	2 cut(s)	846, 1284
BsaI	GGTCTC	1 cut(s)	684
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 324, 354
Bsc4I	CCNNNNNNNGG	3 cut(s)	581, 1180, 1229
Bse1I	ACTGG	2 cut(s)	342, 485
BseBI	CCWGG	3 cut(s)	276, 876, 1032
BseCI	ATCGAT	2 cut(s)	846, 1284
BseGI	GGATG	5 cut(s)	52, 274, 469, 646, 1292
BseLI	CCNNNNNNNGG	3 cut(s)	581, 1180, 1229
BseMII	CTCAG	2 cut(s)	234, 332
BseNI	ACTGG	2 cut(s)	342, 485
BsgI	GTGCAG	1 cut(s)	584
BshFI	GGCC	2 cut(s)	39, 645
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	2 cut(s)	846, 1284
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	352, 1174
BslI	CCNNNNNNNGG	3 cut(s)	581, 1180, 1229
BsmAI	GTCTC	2 cut(s)	239, 684
BsnI	GGCC	2 cut(s)	39, 645
Bso31I	GGTCTC	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	8 cut(s)	103, 261, 303, 466, 996, 1080, 1087, 1310
BspANI	GGCC	2 cut(s)	39, 645
BspCNI	CTCAG	2 cut(s)	235, 331
BspDI	ATCGAT	2 cut(s)	846, 1284
BspLI	GGNNCC	2 cut(s)	522, 646
BspMI	ACCTGC	1 cut(s)	973
BspPI	GGATC	1 cut(s)	991
BspT107I	GGYRCC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	342, 485
BssMI	GATC	8 cut(s)	103, 261, 303, 466, 996, 1080, 1087, 1310
Bst2UI	CCWGG	3 cut(s)	276, 876, 1032
Bst4CI	ACNGT	3 cut(s)	475, 751, 927
Bst6I	CTCTTC	3 cut(s)	5, 186, 1248
BstAFI	CTTAAG	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	6 cut(s)	86, 201, 243, 318, 1116, 1125
BstEII	GGTNACC	1 cut(s)	1183
BstF5I	GGATG	5 cut(s)	52, 274, 469, 646, 1292
BstHHI	GCGC	1 cut(s)	988
BstKTI	GATC	8 cut(s)	106, 264, 306, 469, 999, 1083, 1090, 1313
BstMAI	GTCTC	2 cut(s)	239, 684
BstMBI	GATC	8 cut(s)	103, 261, 303, 466, 996, 1080, 1087, 1310
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	3 cut(s)	276, 876, 1032
BstNSI	RCATGY	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	1183
BstSCI	CCNGG	4 cut(s)	274, 350, 874, 1030
BstV2I	GAAGAC	2 cut(s)	578, 1118
BstX2I	RGATCY	1 cut(s)	996
BstYI	RGATCY	1 cut(s)	996
Bsu15I	ATCGAT	2 cut(s)	846, 1284
BsuI	GTATCC	2 cut(s)	172, 1028
BsuRI	GGCC	2 cut(s)	39, 645
BsuTUI	ATCGAT	2 cut(s)	846, 1284
BtsCI	GGATG	5 cut(s)	52, 274, 469, 646, 1292
BtsIMutI	CAGTG	2 cut(s)	313, 783
BveI	ACCTGC	1 cut(s)	973
Cac8I	GCNNGC	1 cut(s)	414
CfoI	GCGC	1 cut(s)	988
Cfr13I	GGNCC	3 cut(s)	644, 701, 872
ClaI	ATCGAT	2 cut(s)	846, 1284
CsiI	ACCWGGT	2 cut(s)	274, 874
Csp6I	GTAC	6 cut(s)	108, 293, 335, 521, 594, 1248
CviAII	CATG	7 cut(s)	41, 175, 404, 601, 633, 739, 805
CviQI	GTAC	6 cut(s)	108, 293, 335, 521, 594, 1248
DdeI	CTNAG	6 cut(s)	86, 201, 243, 318, 1116, 1125
DpnI	GATC	8 cut(s)	105, 263, 305, 468, 998, 1082, 1089, 1312
DpnII	GATC	8 cut(s)	103, 261, 303, 466, 996, 1080, 1087, 1310
DriI	GACNNNNNGTC	1 cut(s)	925
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	3 cut(s)	5, 186, 1248
Eam1105I	GACNNNNNGTC	1 cut(s)	925
EarI	CTCTTC	3 cut(s)	5, 186, 1248
Eco31I	GGTCTC	1 cut(s)	684
Eco47I	GGWCC	2 cut(s)	701, 872
Eco57I	CTGAAG	1 cut(s)	1272
Eco91I	GGTNACC	1 cut(s)	1183
EcoO65I	GGTNACC	1 cut(s)	1183
EcoRII	CCWGG	3 cut(s)	274, 874, 1030
EcoT22I	ATGCAT	1 cut(s)	1202
FaeI	CATG	7 cut(s)	44, 178, 407, 604, 636, 742, 808
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	7 cut(s)	40, 174, 403, 600, 632, 738, 804
FbaI	TGATCA	1 cut(s)	303
FokI	GGATG	5 cut(s)	59, 281, 476, 653, 1279
FspBI	CTAG	2 cut(s)	609, 1094
FspI	TGCGCA	1 cut(s)	987
GlaI	GCGC	1 cut(s)	987
HaeIII	GGCC	2 cut(s)	39, 645
HapII	CCGG	2 cut(s)	352, 1174
HhaI	GCGC	1 cut(s)	988
Hin1II	CATG	7 cut(s)	44, 178, 407, 604, 636, 742, 808
Hin6I	GCGC	1 cut(s)	986
HinP1I	GCGC	1 cut(s)	986
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	5 cut(s)	509, 668, 767, 791, 1177
HpaII	CCGG	2 cut(s)	352, 1174
HphI	GGTGA	2 cut(s)	890, 1195
Hpy166II	GTNNAC	6 cut(s)	60, 389, 401, 478, 1239, 1307
Hpy188I	TCNGA	1 cut(s)	1216
Hpy8I	GTNNAC	6 cut(s)	60, 389, 401, 478, 1239, 1307
Hpy99I	CGWCG	2 cut(s)	914, 917
HpyAV	CCTTC	3 cut(s)	779, 1227, 1247
HpyCH4III	ACNGT	3 cut(s)	475, 751, 927
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	8 cut(s)	272, 314, 416, 565, 994, 1019, 1051, 1200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	6 cut(s)	86, 201, 243, 318, 1116, 1125
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	7 cut(s)	44, 178, 407, 604, 636, 742, 808
HspAI	GCGC	1 cut(s)	986
KpnI	GGTACC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	8 cut(s)	103, 261, 303, 466, 996, 1080, 1087, 1310
LmnI	GCTCC	1 cut(s)	1294
LweI	GCATC	4 cut(s)	37, 259, 323, 1276
MabI	ACCWGGT	2 cut(s)	274, 874
MaeI	CTAG	2 cut(s)	609, 1094
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	3 cut(s)	278, 970, 1183
MalI	GATC	8 cut(s)	105, 263, 305, 468, 998, 1082, 1089, 1312
MboI	GATC	8 cut(s)	103, 261, 303, 466, 996, 1080, 1087, 1310
MflI	RGATCY	1 cut(s)	996
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	5 cut(s)	111, 362, 504, 728, 1101
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	9 cut(s)	6, 62, 189, 377, 693, 910, 1063, 1090, 1149
Mox20I	TGGCCA	1 cut(s)	39
Mph1103I	ATGCAT	1 cut(s)	1202
MroXI	GAANNNNTTC	2 cut(s)	405, 885
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	2 cut(s)	531, 1167
MslI	CAYNNNNRTG	2 cut(s)	21, 45
Msp20I	TGGCCA	1 cut(s)	39
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	2 cut(s)	352, 1174
MspR9I	CCNGG	4 cut(s)	276, 352, 876, 1032
MvaI	CCWGG	3 cut(s)	276, 876, 1032
MwoI	GCNNNNNNNGC	1 cut(s)	320
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	8 cut(s)	103, 261, 303, 466, 996, 1080, 1087, 1310
NlaIII	CATG	7 cut(s)	44, 178, 407, 604, 636, 742, 808
NlaIV	GGNNCC	2 cut(s)	522, 646
NmuCI	GTSAC	2 cut(s)	278, 1183
NsbI	TGCGCA	1 cut(s)	987
NsiI	ATGCAT	1 cut(s)	1202
NspI	RCATGY	1 cut(s)	407
PciI	ACATGT	1 cut(s)	403
PdmI	GAANNNNTTC	2 cut(s)	405, 885
PfeI	GAWTC	4 cut(s)	668, 767, 791, 1177
PflMI	CCANNNNNTGG	1 cut(s)	581
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PscI	ACATGT	1 cut(s)	403
Psp6I	CCWGG	3 cut(s)	274, 874, 1030
PspEI	GGTNACC	1 cut(s)	1183
PspGI	CCWGG	3 cut(s)	274, 874, 1030
PspN4I	GGNNCC	2 cut(s)	522, 646
PspPI	GGNCC	3 cut(s)	644, 701, 872
PsuI	RGATCY	1 cut(s)	996
RsaI	GTAC	6 cut(s)	109, 294, 336, 522, 595, 1249
RsaNI	GTAC	6 cut(s)	108, 293, 335, 521, 594, 1248
RseI	CAYNNNNRTG	2 cut(s)	21, 45
SaqAI	TTAA	2 cut(s)	531, 1167
Sau3AI	GATC	8 cut(s)	103, 261, 303, 466, 996, 1080, 1087, 1310
Sau96I	GGNCC	3 cut(s)	644, 701, 872
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	4 cut(s)	276, 352, 876, 1032
SduI	GDGCHC	1 cut(s)	232
SexAI	ACCWGGT	2 cut(s)	274, 874
SfaNI	GCATC	4 cut(s)	37, 259, 323, 1276
SinI	GGWCC	2 cut(s)	701, 872
SmiMI	CAYNNNNRTG	2 cut(s)	21, 45
SmlI	CTYRAG	3 cut(s)	530, 819, 1001
SmoI	CTYRAG	3 cut(s)	530, 819, 1001
Sse9I	AATT	5 cut(s)	111, 362, 504, 728, 1101
SspMI	CTAG	2 cut(s)	609, 1094
StyD4I	CCNGG	4 cut(s)	274, 350, 874, 1030
TaaI	ACNGT	3 cut(s)	475, 751, 927
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	8 cut(s)	253, 512, 846, 889, 909, 944, 1284, 1316
TasI	AATT	5 cut(s)	111, 362, 504, 728, 1101
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	4 cut(s)	668, 767, 791, 1177
Tru1I	TTAA	2 cut(s)	531, 1167
Tru9I	TTAA	2 cut(s)	531, 1167
TscAI	CASTG	2 cut(s)	313, 783
TseFI	GTSAC	2 cut(s)	278, 1183
Tsp45I	GTSAC	2 cut(s)	278, 1183
TspRI	CASTG	2 cut(s)	313, 783
Van91I	CCANNNNNTGG	1 cut(s)	581
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	701, 872
XapI	RAATTY	2 cut(s)	362, 728
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XmnI	GAANNNNTTC	2 cut(s)	405, 885
XspI	CTAG	2 cut(s)	609, 1094
ZrmI	AGTACT	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.