Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Forward (+)

55886091 .. 55888976

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACCAGCTCCTCTGCCGCTTCACGCAAGGCTTTAAGCAAGATCGCCTGCAATCGGCTCCAGAAGGAGCTCGTGGAGTGGCAGTTGAATCCTCCGGCCGGATTCAAGCACAAAGTCACTGATAATCTTCAAAGATGGGTGATTGAAGTGACCGGAGCTCCGGGGACTCTGTACGCCAATGAAATGTATCAGCTCCAAGTTGATTTTCCGGAGCATTATCCCATGGAAGCTCCACAGGTGATTTTTCTCCCTCCAGCTCCTCAGCATCCCCACATTTATAGCAATGGCCATATCTGTTTAGATTGGTCGTTTGGTAGAGACACTCAAATAAGCAAGATGGTTATAGACCTACAAATATATTATATGACTCATGGTCTCCAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002184 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006464 GO:0006479 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0008213 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0018444 GO:0019538 GO:0022411 GO:0032259 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043412 GO:0043414 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

128

Amino Acids

14.62

Weight (kDa)

6.57

Isoelectric Point (pI)

66.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 101	2.1e-24	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	1 cut(s)	18
AcoI	YGGCCR	2 cut(s)	96, 286
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	54, 98
AgsI	TTSAA	4 cut(s)	88, 106, 131, 146
AhdI	GACNNNNNGTC	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	6 cut(s)	9, 70, 158, 193, 230, 257
AluI	AGCT	6 cut(s)	9, 70, 158, 193, 230, 257
Alw21I	GWGCWC	2 cut(s)	72, 160
Alw26I	GTCTC	2 cut(s)	312, 380
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	2 cut(s)	96, 286
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	151, 250
BalI	TGGCCA	1 cut(s)	288
BanII	GRGCYC	2 cut(s)	72, 160
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	72, 160
BbvCI	CCTCAGC	1 cut(s)	261
BccI	CCATC	2 cut(s)	129, 331
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	312, 380
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	3 cut(s)	44, 237, 362
Bpu10I	CCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	161, 222
BsaWI	WCCGGW	2 cut(s)	152, 208
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 98
Bse3DI	GCAATG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	161, 222
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	54, 98
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	249
BseX3I	CGGCCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	98, 288
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	72, 160
BsiSI	CCGG	5 cut(s)	95, 99, 153, 161, 209
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	54, 98
BsmAI	GTCTC	2 cut(s)	312, 380
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	98, 288
Bso31I	GGTCTC	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	72, 160
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	98, 288
BspCNI	CTCAG	1 cut(s)	274
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	161, 222
BssMI	GATC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	312, 380
BstMBI	GATC	1 cut(s)	42
BstMCI	CGRYCG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	98, 288
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	3 cut(s)	223, 371, 384
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DriI	GACNNNNNGTC	1 cut(s)	372
EaeI	YGGCCR	2 cut(s)	96, 286
EagI	CGGCCG	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	372
Ecl136II	GAGCTC	2 cut(s)	70, 158
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	2 cut(s)	72, 160
Eco31I	GGTCTC	1 cut(s)	380
Eco52I	CGGCCG	1 cut(s)	96
Eco53kI	GAGCTC	2 cut(s)	70, 158
EcoICRI	GAGCTC	2 cut(s)	70, 158
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	72, 160
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	226, 374, 387
FaiI	YATR	9 cut(s)	224, 279, 291, 344, 358, 363, 365, 372, 385
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	222, 370, 383
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	2 cut(s)	72, 160
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	3 cut(s)	44, 237, 362
HaeIII	GGCC	2 cut(s)	98, 288
HapII	CCGG	5 cut(s)	95, 99, 153, 161, 209
Hin1II	CATG	3 cut(s)	226, 374, 387
HinfI	GANTC	4 cut(s)	88, 102, 166, 367
HpaII	CCGG	5 cut(s)	95, 99, 153, 161, 209
HphI	GGTGA	2 cut(s)	151, 250
Hpy188III	TCNNGA	2 cut(s)	61, 209
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	226, 374, 387
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	9 cut(s)	14, 63, 67, 155, 163, 198, 211, 235, 262
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	115, 148
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	119
MhlI	GDGCHC	2 cut(s)	72, 160
MlsI	TGGCCA	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	160, 361
MnlI	CCTC	4 cut(s)	22, 102, 261, 270
Mox20I	TGGCCA	1 cut(s)	288
MroI	TCCGGA	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	5 cut(s)	95, 99, 153, 161, 209
MspR9I	CCNGG	1 cut(s)	162
NciI	CCSGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	3 cut(s)	226, 374, 387
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	2 cut(s)	115, 148
PfeI	GAWTC	2 cut(s)	88, 102
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	2 cut(s)	160, 361
PpsI	GAGTC	2 cut(s)	160, 361
Psp124BI	GAGCTC	2 cut(s)	72, 160
PspN4I	GGNNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacI	GAGCTC	2 cut(s)	72, 160
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	2 cut(s)	160, 361
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	2 cut(s)	72, 160
SetI	ASST	8 cut(s)	11, 72, 160, 195, 232, 240, 259, 351
SfaNI	GCATC	1 cut(s)	274
SsiI	CCGC	1 cut(s)	18
SstI	GAGCTC	2 cut(s)	72, 160
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	222
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	88, 102
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	115, 148
Tsp45I	GTSAC	2 cut(s)	115, 148
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.