Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8482325.1

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1901

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8482325.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1016 bp

tagttgatccaaatattgcagttcagatacgtggcctctcaaaatcatatccagggaccacaaaaattggttgctgtagatgcaagagcacgtcacctttccatgctctgaagggtctatgggtgaatttttccaagaatcagctattttgtttacttgggccaaatggagctgggaagaccaccacaatcaattgtttgactggcatcacacccgttactggcggagatgcattgatttataggaactctgttcgaagctctgttggcatggctaaaattcggcaaattataggagtttgtccacagtttgatattctttgggatgcattatctgggcaagagcacctccacctgtttgctagtattaaaggcctatccccagcttcaataaaagtggttgctcagaagtcattggtagaagtaagactcaccgaggcagccaaaattagagctgggagttacagtggaggaatgaaacgtcgcttaagtgtggcaatagcccttattggtgatccaaagttagtcatcttagatgaaccgacaactggtatggatccaataactagaagacatgtgtgggacatcattgaggatgcaaaaaaggggcgtgcaattgtcctaaccactcactcaatggaagaagctgacattttaggtgataggataggaataatggcaaagggtaggctccgttgcattggtacttcaatcaggctgaaatcacggtttggtactggctttattgctactgttagtttcagtgaaagcaccaatggacaaagccctccacatggggatgcacttactacacctcaccatgaggcagtgaagcagttctttaaatatcacttggatgttttaccgaaagaagagaacaaagcctttctgacttttgttattcctcatgacagagaggcacttctgacggtaatcttctacttttttcttatacctttcaaatctactgtttcctttcaaagtttttgttttggttcttctactgaaacccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

337

Amino Acids

36.82

Weight (kDa)

9.46

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	3 cut(s)	508, 550, 563
AcsI	RAATTY	2 cut(s)	126, 278
AcuI	CTGAAG	1 cut(s)	130
AfaI	GTAC	2 cut(s)	705, 735
AfiI	CCNNNNNNNGG	3 cut(s)	220, 547, 793
AflII	CTTAAG	1 cut(s)	486
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	4 cut(s)	389, 710, 960, 979
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	6 cut(s)	144, 172, 260, 385, 454, 646
AluI	AGCT	6 cut(s)	144, 172, 260, 385, 454, 646
Alw21I	GWGCWC	2 cut(s)	91, 347
AlwI	GGATC	3 cut(s)	508, 550, 563
AoxI	GGCC	3 cut(s)	33, 160, 372
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	2 cut(s)	126, 278
Asp700I	GAANNNNTTC	1 cut(s)	835
AspS9I	GGNCC	2 cut(s)	56, 160
AsuHPI	GGTGA	6 cut(s)	86, 135, 423, 523, 670, 808
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	555
BbsI	GAAGAC	2 cut(s)	184, 576
Bbv12I	GWGCWC	2 cut(s)	91, 347
BbvI	GCAGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	53
BfaI	CTAG	2 cut(s)	362, 566
BfmI	CTRYAG	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	486
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	56, 160
BmiI	GGNNCC	3 cut(s)	57, 557, 691
BmrFI	CCNGG	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	1005
BmsI	GCATC	6 cut(s)	70, 215, 219, 315, 585, 789
BmuI	ACTGGG	1 cut(s)	1005
BpiI	GAAGAC	2 cut(s)	184, 576
Bpu14I	TTCGAA	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	52, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 547, 793
Bse1I	ACTGG	5 cut(s)	207, 225, 552, 741, 1011
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	52, 434
BseGI	GGATG	4 cut(s)	330, 600, 804, 861
BseLI	CCNNNNNNNGG	3 cut(s)	220, 547, 793
BseMII	CTCAG	1 cut(s)	418
BseNI	ACTGG	5 cut(s)	207, 225, 552, 741, 1011
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	3 cut(s)	172, 381, 454
BshFI	GGCC	3 cut(s)	35, 162, 374
BsiHKAI	GWGCWC	2 cut(s)	91, 347
BslFI	GGGAC	2 cut(s)	69, 595
BslI	CCNNNNNNNGG	3 cut(s)	220, 547, 793
BsmFI	GGGAC	2 cut(s)	69, 595
BsnI	GGCC	3 cut(s)	35, 162, 374
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	91, 347
Bsp143I	GATC	3 cut(s)	6, 513, 555
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	3 cut(s)	35, 162, 374
BspCNI	CTCAG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	3 cut(s)	57, 557, 691
BspPI	GGATC	3 cut(s)	508, 550, 563
BspT104I	TTCGAA	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	486
BsrI	ACTGG	5 cut(s)	207, 225, 552, 741, 1011
BssECI	CCNNGG	2 cut(s)	52, 434
BssMI	GATC	3 cut(s)	6, 513, 555
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	6 cut(s)	308, 466, 728, 753, 930, 969
Bst6I	CTCTTC	1 cut(s)	866
BstAFI	CTTAAG	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	611
BstDEI	CTNAG	2 cut(s)	404, 531
BstF5I	GGATG	4 cut(s)	330, 600, 804, 861
BstKTI	GATC	3 cut(s)	9, 516, 558
BstMBI	GATC	3 cut(s)	6, 513, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 266
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	2 cut(s)	184, 576
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	35, 162, 374
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	4 cut(s)	330, 600, 804, 861
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	3 cut(s)	471, 768, 833
Cac8I	GCNNGC	1 cut(s)	611
CciI	TCATGA	1 cut(s)	906
Cfr13I	GGNCC	2 cut(s)	56, 160
Csp6I	GTAC	2 cut(s)	704, 734
CspCI	CAANNNNNGTGG	4 cut(s)	48, 83, 377, 412
CviAII	CATG	6 cut(s)	103, 270, 574, 793, 820, 907
CviQI	GTAC	2 cut(s)	704, 734
DdeI	CTNAG	2 cut(s)	404, 531
DpnI	GATC	3 cut(s)	8, 515, 557
DpnII	GATC	3 cut(s)	6, 513, 555
DraI	TTTAAA	1 cut(s)	843
Eam1104I	CTCTTC	1 cut(s)	866
EarI	CTCTTC	1 cut(s)	866
EciI	GGCGGA	1 cut(s)	239
Eco147I	AGGCCT	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	51
EcoT22I	ATGCAT	2 cut(s)	234, 330
FaeI	CATG	6 cut(s)	106, 273, 577, 796, 823, 910
FalI	AAGNNNNNCTT	2 cut(s)	823, 855
FaqI	GGGAC	2 cut(s)	69, 595
FatI	CATG	6 cut(s)	102, 269, 573, 792, 819, 906
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	4 cut(s)	337, 607, 811, 868
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	2 cut(s)	362, 566
GluI	GCNGC	1 cut(s)	440
GsaI	CCCAGC	3 cut(s)	176, 385, 458
HaeIII	GGCC	3 cut(s)	35, 162, 374
Hin1II	CATG	6 cut(s)	106, 273, 577, 796, 823, 910
HinfI	GANTC	2 cut(s)	138, 428
HphI	GGTGA	6 cut(s)	86, 135, 423, 523, 670, 808
Hpy166II	GTNNAC	2 cut(s)	154, 304
Hpy188I	TCNGA	5 cut(s)	26, 110, 407, 890, 926
Hpy188III	TCNNGA	1 cut(s)	907
Hpy8I	GTNNAC	2 cut(s)	154, 304
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	6 cut(s)	308, 466, 728, 753, 930, 969
HpyCH4IV	ACGT	3 cut(s)	30, 91, 480
HpyCH4V	TGCA	8 cut(s)	19, 83, 232, 328, 598, 613, 698, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 266
HpyF3I	CTNAG	2 cut(s)	404, 531
HpySE526I	ACGT	3 cut(s)	30, 91, 480
Hsp92II	CATG	6 cut(s)	106, 273, 577, 796, 823, 910
Kzo9I	GATC	3 cut(s)	6, 513, 555
LmnI	GCTCC	2 cut(s)	169, 695
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	6 cut(s)	70, 215, 219, 315, 585, 789
MaeI	CTAG	2 cut(s)	362, 566
MaeII	ACGT	3 cut(s)	30, 91, 480
MaeIII	GTNAC	3 cut(s)	92, 216, 460
MalI	GATC	3 cut(s)	8, 515, 557
MboI	GATC	3 cut(s)	6, 513, 555
MboII	GAAGA	6 cut(s)	189, 581, 652, 883, 927, 989
MfeI	CAATTG	2 cut(s)	192, 614
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	91, 347
MluCI	AATT	7 cut(s)	65, 126, 192, 278, 287, 446, 614
MlyI	GAGTC	1 cut(s)	422
Mph1103I	ATGCAT	2 cut(s)	234, 330
MroXI	GAANNNNTTC	1 cut(s)	835
MseI	TTAA	3 cut(s)	368, 487, 842
MslI	CAYNNNNRTG	2 cut(s)	797, 854
MspCI	CTTAAG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	2 cut(s)	192, 614
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	80, 266
NdeII	GATC	3 cut(s)	6, 513, 555
NlaIII	CATG	6 cut(s)	106, 273, 577, 796, 823, 910
NlaIV	GGNNCC	3 cut(s)	57, 557, 691
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	2 cut(s)	234, 330
NspI	RCATGY	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	906
PceI	AGGCCT	1 cut(s)	374
PciI	ACATGT	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	835
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	441
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	31
PscI	ACATGT	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	3 cut(s)	172, 381, 454
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	57, 557, 691
PspPI	GGNCC	2 cut(s)	56, 160
PsuI	RGATCY	1 cut(s)	555
RsaI	GTAC	2 cut(s)	705, 735
RsaNI	GTAC	2 cut(s)	704, 734
RseI	CAYNNNNRTG	2 cut(s)	797, 854
SaqAI	TTAA	3 cut(s)	368, 487, 842
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	3 cut(s)	6, 513, 555
Sau96I	GGNCC	2 cut(s)	56, 160
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	91, 347
SfaNI	GCATC	6 cut(s)	70, 215, 219, 315, 585, 789
SfcI	CTRYAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	2 cut(s)	797, 854
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
Sse9I	AATT	7 cut(s)	65, 126, 192, 278, 287, 446, 614
SseBI	AGGCCT	1 cut(s)	374
SsiI	CCGC	1 cut(s)	224
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	362, 566
StuI	AGGCCT	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	6 cut(s)	308, 466, 728, 753, 930, 969
TaiI	ACGT	3 cut(s)	33, 94, 483
TaqI	TCGA	1 cut(s)	255
TasI	AATT	7 cut(s)	65, 126, 192, 278, 287, 446, 614
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	3 cut(s)	368, 487, 842
Tru9I	TTAA	3 cut(s)	368, 487, 842
TscAI	CASTG	3 cut(s)	471, 768, 833
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	490, 551
TspGWI	ACGGA	1 cut(s)	682
TspRI	CASTG	3 cut(s)	471, 768, 833
Vha464I	CTTAAG	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	126, 278
XceI	RCATGY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	835
XspI	CTAG	2 cut(s)	362, 566
Zsp2I	ATGCAT	2 cut(s)	234, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.