Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Forward (+)

66185933 .. 66192022

Gene Structure 6090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2889 bp

ATGGGTTTGCAGAGCGGAGTCCCATTGCTGTTTCAGCAATTCAAGGCTCTGTTCCGGAAGAACCTGCTGCTGGCATGGCGGAAGAAGGCGGCGACGTTCGTCCAGCTCTTCTCGTCCTTGTTCTTCGTCTTCCTCCTCTTCTGTATCCAGAAGGCCATGATGGCTCGATTCGCCTCCTCCACCACTTACAAGAGCGTCACCGATCCCCAGCCTCTGGTTGCGCCGCCGATCCCGCCCTGCGAGGACAAGTACTACATCCACAAGCCCTGCTTTGACTTTGTGTGGAGCGGAAACGACAGCCCTAGGATTCGGAGCATTGCCACTGCTATCATGGCTAACAATCCCGGCCGGCCGATTCCGTCGCTAAAGGTCAAATCATTTAAAACAAAAGCTGATGTAGATGTATGGCTATCTAGTAATCCTATGTACTGCCCCGGAGCTTTGCATTTTGTGGAAAGAAATGCCAGTGTTATTAGTTATGGCATACAGACCAACTCTACTCCTCTTGCAAAACAAGGGCAATTTGAGGACCCCACATTCAAATTTCAAATTCCCCTTCAGATTGCTGCAGAGCGTGAAATTGCTAGGTCTTTGATTGGAGTTCCAAACTTCAGCTGGGTTGTTGCGCTGAAAGAATTTGCACACCCTTCAAGGGAGATTCCGTCTGCATTGCAGACAGTAGGACCGACCTTCTTTCTTGCAACTTCCATGTTTGGTTTTGTGTTTCAAATGAGTTCTTTGATCACAGAAAAAGAACTAAAGCTTCGACAGGCAATGACAATTATGGGTCTTTATGACTCTGCATACTGGTTCTCATGGCTCACATGGGAGGGAATTATCACACTTCTCTCATCACTTTTCATCACTCTGTTTGGAATCATATTTCAGTTTGATATGTTCCTGAAAAACAATTTTGCGGTCATCTTCCTCATTTTCTTTCTTTTTCAACTCAATATGATTGGTTTTGCCTTTATGTTATCGGCATTCATAAGCAAGTCATCTTCATCGACAACTGTGGGTTTCTCCATATATATTGTTGGATCTGTCACCCAGATTGTCACAGCCGCTGGATTTCCCTACAGCCAAAACATCCAGAAAAGGTATAGAATAATGTGGTCATTATTCCCTCCAAATCTTCTTGCCAAAGCTCTAGACATACTCTCTGGTGCAACATCTCCCCCTTATGATATGGGCATAAAATGGAGTGGAATAACAAAGTGTCCACCAAATGAAACGGACTGCGTTATAACAATTAGTGACATTTTTAAATGGCTGGCGGCAACATTCTTTCTCTGGTTTGTATTGGCTATCTACTTCGATAATATCATCCCAAATGTATCTGGTGTCAGAAAATCAGTTTTTTACTTTTTAAATCCTGGGTACTGGCTAGGGAAGGGTGGAAAAGTGGAAGAGGGTGGCATTTGCAGTTGCATAGGTTCAGTTCCAGAACAGGAGCCACTTACTCCAGATGATGAAGATGTACTTGAAGAAGAGAACATTGTAAAACAACAAACTAGCGAGGGCATAGTTGATCCAAATATTGCAGTTCAGATACGTGGACTCTCAAAATCATATCCAGGGACCACAAAAATTGGTTGCTGTAGATGCAAGAGCACGTCACCTTTCCATGCTCTGAAGGGTCTATGGGTGAATTTTTCCAAGAATCAGCTATTTTGTTTACTTGGGCCAAATGGAGCTGGGAAGACCACCACAATCAATTGTTTGACTGGCATCACACCCGTTACTGGCGGAGATGCATTGATTTATAGGAACTCTGTTCGAAGCTCTGTTGGCATGGCTAAAATTCGGCAAATTATAGGAGTTTGTCCACAGTTTGATATTCTTTGGGATGCATTATCTGGGCAAGAGCACCTCCACCTGTTTGCTAGTATTAAAGGCCTATCCCCAGCTTCAATAAAAGTGGTTGCTCAGAAGTCATTGGTAGAAGTAAGACTCACCGAGGCAGCCAAAATTAGAGCTGGGAGTTACAGTGGAGGAATGAAACGTCGCTTAAGTGTGGCAATAGCCCTTATTGGTGATCCAAAGTTAGTCATCTTAGATGAACCGACAACCGGTATGGATCCAATAACTAGAAGACATGTGTGGGACATCATTGAGGATGCAAAAAAGGGGCGTGCAATTGTCCTAACCACTCACTCAATGGAAGAAGCTGACATTTTAGGTGATAGGATAGGAATAATGGCAAAGGGTAGGCTCCGTTGTATTGGTACTTCAATCAGGCTGAAATCACGGTTTGGTACTGGCTTTATTGCTACTGTTAGTTTCAGTGAAAGCACCAATGGACAAAGCCCTCCACATGGGGATGCACTTACTACACCTCACCATGAGGCAGTGAAGCAGTTCTTTAAATATCACTTGGATGTTTTACCGAAAGAAGAGAACAAAGCCTTTCTGACTTTTGTTATTCCTCATGACAGAGAGGCACTTCTGACGAAATTTTTTAAGGAGCTTCAAGATAGAGAAATTGAGTTTGGTATCTCAGACATCCAACTGGGTCTTACAACTCTTGAAGAAGTTTTCTTGAATATCGCAAGGCAGGCAGAGCTAGAAACTGCTACGGCTGAGGGGAGGTTGGTCACTCTCACATTAACATCCGGAGCCTTAATTGAGATACCTGTAGGAGCTAGGTTTATTGGGATTCCAGGTACAGAATCCACAGAAAATCCAAGAGGAGTTATGGTAGAAGTTTTCTGGGTGCAAGATGATTCTGGTTCCCTCTGCATTTCAGGCCACTCACCTGAAACTCCAATACCTCCAAATGTTGAACCAATGCCTTCCTTGGCACCTACTTCACGCCGCAATCTGTTACCAGTTCATGGAGTTGTAATCCACCCTGATCAAATGAGTAATACCACCACCCCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

962

Amino Acids

106.42

Weight (kDa)

8.59

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	221 - 438	3.6e-17	ABC-2 family transporter protein
ABC_tran	PF00005	546 - 691	1.7e-23	ABC transporter
AAA_21	PF13304	646 - 723	2.1e-09	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA11_C	PF25158	846 - 900	1.6e-30	ABC transporter A family member 11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1247
Acc36I	ACCTGC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	2803
AccB7I	CCANNNNNTGG	2 cut(s)	214, 2837
AccBSI	CCGCTC	2 cut(s)	15, 288
AccIII	TCCGGA	2 cut(s)	54, 2615
AclWI	GGATC	7 cut(s)	197, 223, 1048, 1526, 2033, 2075, 2088
AcoI	YGGCCR	2 cut(s)	346, 350
AcsI	RAATTY	6 cut(s)	542, 549, 635, 1651, 1803, 2456
AcuI	CTGAAG	3 cut(s)	542, 595, 1655
AfaI	GTAC	7 cut(s)	251, 428, 1382, 1482, 2230, 2260, 2668
AfiI	CCNNNNNNNGG	7 cut(s)	70, 214, 652, 1745, 2072, 2318, 2837
AflII	CTTAAG	1 cut(s)	2011
AflIII	ACRYGT	1 cut(s)	2098
AgeI	ACCGGT	1 cut(s)	2072
AjiI	CACGTC	1 cut(s)	1617
AjnI	CCWGG	3 cut(s)	1375, 1576, 2662
AjuI	GAANNNNNNNTTGG	2 cut(s)	2475, 2507
Alw21I	GWGCWC	2 cut(s)	1616, 1872
AlwI	GGATC	7 cut(s)	197, 223, 1048, 1526, 2033, 2075, 2088
AlwNI	CAGNNNCTG	2 cut(s)	214, 1067
Aor13HI	TCCGGA	2 cut(s)	54, 2615
AoxI	GGCC	6 cut(s)	153, 346, 350, 1685, 1897, 2749
ApeKI	GCWGC	3 cut(s)	67, 566, 1964
ApoI	RAATTY	6 cut(s)	542, 549, 635, 1651, 1803, 2456
AsiGI	ACCGGT	1 cut(s)	2072
Asp700I	GAANNNNTTC	1 cut(s)	2360
AspA2I	CCTAGG	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	223, 628
AspS9I	GGNCC	4 cut(s)	529, 683, 1581, 1685
AsuC2I	CCSGG	2 cut(s)	345, 435
AsuHPI	GGTGA	9 cut(s)	190, 1039, 1611, 1660, 1948, 2048, 2195, 2333, 2748
AsuII	TTCGAA	1 cut(s)	1780
AvaII	GGWCC	3 cut(s)	529, 683, 1581
AvrII	CCTAGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	2080
BanI	GGYRCC	1 cut(s)	2803
BarI	GAAGNNNNNNTAC	2 cut(s)	2215, 2247
BbsI	GAAGAC	3 cut(s)	121, 1709, 2101
Bbv12I	GWGCWC	2 cut(s)	1616, 1872
BbvCI	CCTCAGC	1 cut(s)	2583
BbvI	GCAGC	3 cut(s)	54, 553, 1976
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	2595
BciT130I	CCWGG	3 cut(s)	1377, 1578, 2664
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	2 cut(s)	741, 2857
BcnI	CCSGG	2 cut(s)	345, 435
BfmI	CTRYAG	4 cut(s)	567, 1078, 1600, 2637
BfrI	CTTAAG	1 cut(s)	2011
BfuAI	ACCTGC	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	155
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	8 cut(s)	68, 90, 224, 567, 1065, 1278, 1965, 2818
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	8 cut(s)	69, 91, 225, 568, 1066, 1279, 1966, 2819
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	5 cut(s)	345, 435, 1377, 1578, 2664
Bme18I	GGWCC	3 cut(s)	529, 683, 1581
BmgBI	CACGTC	1 cut(s)	1617
BmgT120I	GGNCC	4 cut(s)	529, 683, 1581, 1685
BmiI	GGNNCC	8 cut(s)	531, 1455, 1582, 2082, 2216, 2620, 2734, 2805
BmrFI	CCNGG	5 cut(s)	345, 435, 1377, 1578, 2664
BmrI	ACTGGG	1 cut(s)	2522
BmsI	GCATC	6 cut(s)	1595, 1740, 1744, 1840, 2110, 2314
BmuI	ACTGGG	1 cut(s)	2522
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	3 cut(s)	121, 1709, 2101
BpmI	CTGGAG	1 cut(s)	1449
Bpu10I	CCTNAGC	1 cut(s)	2583
Bpu14I	TTCGAA	1 cut(s)	1780
BpuMI	CCSGG	2 cut(s)	345, 435
BsaAI	YACGTR	1 cut(s)	1556
BsaJI	CCNNGG	6 cut(s)	302, 433, 1376, 1577, 1959, 2799
BsaWI	WCCGGW	3 cut(s)	54, 2072, 2615
BsaXI	ACNNNNNCTCC	6 cut(s)	647, 677, 1975, 2005, 2685, 2715
Bsc4I	CCNNNNNNNGG	7 cut(s)	70, 214, 652, 1745, 2072, 2318, 2837
Bse118I	RCCGGY	2 cut(s)	348, 2072
Bse1I	ACTGG	8 cut(s)	465, 812, 1388, 1732, 1750, 2266, 2517, 2831
Bse3DI	GCAATG	4 cut(s)	23, 315, 668, 780
BseAI	TCCGGA	2 cut(s)	54, 2615
BseBI	CCWGG	3 cut(s)	1377, 1578, 2664
BseDI	CCNNGG	6 cut(s)	302, 433, 1376, 1577, 1959, 2799
BseGI	GGATG	9 cut(s)	255, 1089, 1326, 1855, 2125, 2329, 2386, 2505, 2612
BseLI	CCNNNNNNNGG	7 cut(s)	70, 214, 652, 1745, 2072, 2318, 2837
BseMI	GCAATG	4 cut(s)	23, 315, 668, 780
BseMII	CTCAG	3 cut(s)	1943, 2514, 2574
BseNI	ACTGG	8 cut(s)	465, 812, 1388, 1732, 1750, 2266, 2517, 2831
BseRI	GAGGAG	4 cut(s)	125, 166, 492, 2706
BseX3I	CGGCCG	2 cut(s)	346, 350
BseXI	GCAGC	3 cut(s)	54, 553, 1976
BseYI	CCCAGC	5 cut(s)	207, 615, 1697, 1906, 1979
Bsh1285I	CGRYCG	2 cut(s)	349, 353
BshFI	GGCC	6 cut(s)	155, 348, 352, 1687, 1899, 2751
BshNI	GGYRCC	1 cut(s)	2803
BshTI	ACCGGT	1 cut(s)	2072
BsiEI	CGRYCG	2 cut(s)	349, 353
BsiHKAI	GWGCWC	2 cut(s)	1616, 1872
BsiSI	CCGG	6 cut(s)	55, 345, 349, 435, 2073, 2616
BslFI	GGGAC	3 cut(s)	5, 1594, 2120
BslI	CCNNNNNNNGG	7 cut(s)	70, 214, 652, 1745, 2072, 2318, 2837
BsmFI	GGGAC	3 cut(s)	5, 1594, 2120
BsmI	GAATGC	1 cut(s)	983
BsnI	GGCC	6 cut(s)	155, 348, 352, 1687, 1899, 2751
Bsp119I	TTCGAA	1 cut(s)	1780
Bsp1286I	GDGCHC	2 cut(s)	1616, 1872
Bsp13I	TCCGGA	2 cut(s)	54, 2615
Bsp143I	GATC	8 cut(s)	202, 228, 741, 1040, 1531, 2038, 2080, 2857
BspANI	GGCC	6 cut(s)	155, 348, 352, 1687, 1899, 2751
BspCNI	CTCAG	3 cut(s)	1942, 2513, 2575
BspEI	TCCGGA	2 cut(s)	54, 2615
BspHI	TCATGA	1 cut(s)	2431
BspLI	GGNNCC	8 cut(s)	531, 1455, 1582, 2082, 2216, 2620, 2734, 2805
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	7 cut(s)	197, 223, 1048, 1526, 2033, 2075, 2088
BspQI	GCTCTTC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	1780
BspT107I	GGYRCC	1 cut(s)	2803
BspTI	CTTAAG	1 cut(s)	2011
BsrBI	CCGCTC	2 cut(s)	15, 288
BsrDI	GCAATG	4 cut(s)	23, 315, 668, 780
BsrFI	RCCGGY	2 cut(s)	348, 2072
BsrI	ACTGG	8 cut(s)	465, 812, 1388, 1732, 1750, 2266, 2517, 2831
BssAI	RCCGGY	2 cut(s)	348, 2072
BssECI	CCNNGG	6 cut(s)	302, 433, 1376, 1577, 1959, 2799
BssMI	GATC	8 cut(s)	202, 228, 741, 1040, 1531, 2038, 2080, 2857
BssT1I	CCWWGG	2 cut(s)	302, 2799
Bst2UI	CCWGG	3 cut(s)	1377, 1578, 2664
Bst4CI	ACNGT	6 cut(s)	679, 1015, 1833, 1991, 2253, 2278
Bst6I	CTCTTC	5 cut(s)	113, 143, 1404, 1485, 2391
BstAFI	CTTAAG	1 cut(s)	2011
BstBAI	YACGTR	1 cut(s)	1556
BstBI	TTCGAA	1 cut(s)	1780
BstC8I	GCNNGC	5 cut(s)	72, 350, 1275, 2136, 2559
BstDEI	CTNAG	4 cut(s)	1929, 2056, 2500, 2583
BstF5I	GGATG	9 cut(s)	255, 1089, 1326, 1855, 2125, 2329, 2386, 2505, 2612
BstHHI	GCGC	2 cut(s)	223, 628
BstKTI	GATC	8 cut(s)	205, 231, 744, 1043, 1534, 2041, 2083, 2860
BstMBI	GATC	8 cut(s)	202, 228, 741, 1040, 1531, 2038, 2080, 2857
BstMCI	CGRYCG	2 cut(s)	349, 353
BstNI	CCWGG	3 cut(s)	1377, 1578, 2664
BstNSI	RCATGY	1 cut(s)	2102
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSCI	CCNGG	5 cut(s)	343, 433, 1375, 1576, 2662
BstSFI	CTRYAG	4 cut(s)	567, 1078, 1600, 2637
BstV1I	GCAGC	3 cut(s)	54, 553, 1976
BstV2I	GAAGAC	3 cut(s)	121, 1709, 2101
BstX2I	RGATCY	2 cut(s)	1040, 2080
BstYI	RGATCY	2 cut(s)	1040, 2080
BstZI	CGGCCG	2 cut(s)	346, 350
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	6 cut(s)	155, 348, 352, 1687, 1899, 2751
BtrI	CACGTC	1 cut(s)	1617
BtsCI	GGATG	9 cut(s)	255, 1089, 1326, 1855, 2125, 2329, 2386, 2505, 2612
BtsI	GCAGTG	2 cut(s)	321, 2358
BtsIMutI	CAGTG	5 cut(s)	321, 472, 1996, 2293, 2358
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	5 cut(s)	72, 350, 1275, 2136, 2559
CaiI	CAGNNNCTG	2 cut(s)	214, 1067
CciI	TCATGA	1 cut(s)	2431
CfoI	GCGC	2 cut(s)	223, 628
Cfr10I	RCCGGY	2 cut(s)	348, 2072
Cfr13I	GGNCC	4 cut(s)	529, 683, 1581, 1685
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	7 cut(s)	250, 427, 1381, 1481, 2229, 2259, 2667
CspAI	ACCGGT	1 cut(s)	2072
CspCI	CAANNNNNGTGG	4 cut(s)	1573, 1608, 1902, 1937
CviQI	GTAC	7 cut(s)	250, 427, 1381, 1481, 2229, 2259, 2667
DdeI	CTNAG	4 cut(s)	1929, 2056, 2500, 2583
DpnI	GATC	8 cut(s)	204, 230, 743, 1042, 1533, 2040, 2082, 2859
DpnII	GATC	8 cut(s)	202, 228, 741, 1040, 1531, 2038, 2080, 2857
DraI	TTTAAA	4 cut(s)	382, 1267, 1371, 2368
EaeI	YGGCCR	2 cut(s)	346, 350
EagI	CGGCCG	2 cut(s)	346, 350
Eam1104I	CTCTTC	5 cut(s)	113, 143, 1404, 1485, 2391
EarI	CTCTTC	5 cut(s)	113, 143, 1404, 1485, 2391
EciI	GGCGGA	2 cut(s)	94, 1764
EclXI	CGGCCG	2 cut(s)	346, 350
Eco130I	CCWWGG	2 cut(s)	302, 2799
Eco147I	AGGCCT	1 cut(s)	1899
Eco47I	GGWCC	3 cut(s)	529, 683, 1581
Eco52I	CGGCCG	2 cut(s)	346, 350
Eco57I	CTGAAG	3 cut(s)	542, 595, 1655
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRII	CCWGG	3 cut(s)	1375, 1576, 2662
EcoT14I	CCWWGG	2 cut(s)	302, 2799
EcoT22I	ATGCAT	2 cut(s)	1759, 1855
ErhI	CCWWGG	2 cut(s)	302, 2799
FalI	AAGNNNNNCTT	6 cut(s)	254, 286, 1467, 1499, 2348, 2380
FaqI	GGGAC	3 cut(s)	5, 1594, 2120
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	2 cut(s)	741, 2857
Fnu4HI	GCNGC	8 cut(s)	68, 90, 224, 567, 1065, 1278, 1965, 2818
FokI	GGATG	9 cut(s)	242, 1076, 1313, 1862, 2132, 2336, 2393, 2492, 2599
FseI	GGCCGGCC	1 cut(s)	352
Fsp4HI	GCNGC	8 cut(s)	68, 90, 224, 567, 1065, 1278, 1965, 2818
GlaI	GCGC	2 cut(s)	222, 627
GluI	GCNGC	8 cut(s)	68, 90, 224, 567, 1065, 1278, 1965, 2818
GsaI	CCCAGC	5 cut(s)	211, 619, 1701, 1910, 1983
GsuI	CTGGAG	1 cut(s)	1449
HaeIII	GGCC	6 cut(s)	155, 348, 352, 1687, 1899, 2751
HapII	CCGG	6 cut(s)	55, 345, 349, 435, 2073, 2616
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	223, 628
Hin6I	GCGC	2 cut(s)	221, 626
HinP1I	GCGC	2 cut(s)	221, 626
HindIII	AAGCTT	1 cut(s)	761
HpaII	CCGG	6 cut(s)	55, 345, 349, 435, 2073, 2616
HphI	GGTGA	9 cut(s)	190, 1039, 1611, 1660, 1948, 2048, 2195, 2333, 2748
Hpy166II	GTNNAC	4 cut(s)	1223, 1559, 1679, 1829
Hpy188I	TCNGA	9 cut(s)	312, 561, 1349, 1551, 1635, 1932, 2415, 2451, 2503
Hpy8I	GTNNAC	4 cut(s)	1223, 1559, 1679, 1829
Hpy99I	CGWCG	3 cut(s)	97, 364, 2010
HpyAV	CCTTC	8 cut(s)	79, 145, 566, 657, 700, 1387, 1630, 2805
HpyCH4III	ACNGT	6 cut(s)	679, 1015, 1833, 1991, 2253, 2278
HpyCH4IV	ACGT	4 cut(s)	95, 1555, 1616, 2005
HpyF3I	CTNAG	4 cut(s)	1929, 2056, 2500, 2583
HpySE526I	ACGT	4 cut(s)	95, 1555, 1616, 2005
HspAI	GCGC	2 cut(s)	221, 626
Kpn2I	TCCGGA	2 cut(s)	54, 2615
KroI	GCCGGC	1 cut(s)	348
KroNI	GCCGGC	1 cut(s)	350
Ksp22I	TGATCA	2 cut(s)	741, 2857
Kzo9I	GATC	8 cut(s)	202, 228, 741, 1040, 1531, 2038, 2080, 2857
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	9 cut(s)	285, 312, 437, 1453, 1694, 2220, 2467, 2618, 2642
Lsp1109I	GCAGC	3 cut(s)	54, 553, 1976
LweI	GCATC	6 cut(s)	1595, 1740, 1744, 1840, 2110, 2314
MaeII	ACGT	4 cut(s)	95, 1555, 1616, 2005
MaeIII	GTNAC	9 cut(s)	196, 1045, 1057, 1256, 1617, 1741, 1985, 2596, 2826
MalI	GATC	8 cut(s)	204, 230, 743, 1042, 1533, 2040, 2082, 2859
MbiI	CCGCTC	2 cut(s)	15, 288
MboI	GATC	8 cut(s)	202, 228, 741, 1040, 1531, 2038, 2080, 2857
MfeI	CAATTG	2 cut(s)	1717, 2139
MflI	RGATCY	2 cut(s)	1040, 2080
MhlI	GDGCHC	2 cut(s)	1616, 1872
MlyI	GAGTC	4 cut(s)	27, 791, 1554, 1947
MmeI	TCCRAC	2 cut(s)	1018, 2533
Mph1103I	ATGCAT	2 cut(s)	1759, 1855
MroI	TCCGGA	2 cut(s)	54, 2615
MroNI	GCCGGC	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	2360
MseI	TTAA	9 cut(s)	381, 1266, 1370, 1893, 2012, 2367, 2463, 2609, 2624
MslI	CAYNNNNRTG	2 cut(s)	2322, 2379
MspA1I	CMGCKG	2 cut(s)	615, 1067
MspCI	CTTAAG	1 cut(s)	2011
MspI	CCGG	6 cut(s)	55, 345, 349, 435, 2073, 2616
MspR9I	CCNGG	5 cut(s)	345, 435, 1377, 1578, 2664
MunI	CAATTG	2 cut(s)	1717, 2139
Mva1269I	GAATGC	1 cut(s)	983
MvaI	CCWGG	3 cut(s)	1377, 1578, 2664
NaeI	GCCGGC	1 cut(s)	350
NciI	CCSGG	2 cut(s)	345, 435
NdeII	GATC	8 cut(s)	202, 228, 741, 1040, 1531, 2038, 2080, 2857
NgoMIV	GCCGGC	1 cut(s)	348
NlaIV	GGNNCC	8 cut(s)	531, 1455, 1582, 2082, 2216, 2620, 2734, 2805
NmuCI	GTSAC	6 cut(s)	196, 1045, 1057, 1256, 1617, 2596
NsiI	ATGCAT	2 cut(s)	1759, 1855
NspI	RCATGY	1 cut(s)	2102
NspV	TTCGAA	1 cut(s)	1780
PagI	TCATGA	1 cut(s)	2431
PceI	AGGCCT	1 cut(s)	1899
PciI	ACATGT	1 cut(s)	2098
PciSI	GCTCTTC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	983
PdiI	GCCGGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	2360
PfeI	GAWTC	9 cut(s)	168, 307, 355, 658, 876, 1663, 2659, 2672, 2726
PflMI	CCANNNNNTGG	2 cut(s)	214, 2837
PinAI	ACCGGT	1 cut(s)	2072
PkrI	GCNGC	8 cut(s)	69, 91, 225, 568, 1066, 1279, 1966, 2819
PleI	GAGTC	4 cut(s)	26, 791, 1554, 1947
PpsI	GAGTC	4 cut(s)	26, 791, 1554, 1947
Ppu21I	YACGTR	1 cut(s)	1556
PpuMI	RGGWCCY	1 cut(s)	529
PscI	ACATGT	1 cut(s)	2098
PshAI	GACNNNNGTC	1 cut(s)	98
PsiI	TTATAA	1 cut(s)	1247
Psp5II	RGGWCCY	1 cut(s)	529
Psp6I	CCWGG	3 cut(s)	1375, 1576, 2662
PspFI	CCCAGC	5 cut(s)	207, 615, 1697, 1906, 1979
PspGI	CCWGG	3 cut(s)	1375, 1576, 2662
PspN4I	GGNNCC	8 cut(s)	531, 1455, 1582, 2082, 2216, 2620, 2734, 2805
PspPI	GGNCC	4 cut(s)	529, 683, 1581, 1685
PspPPI	RGGWCCY	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	2 cut(s)	214, 1067
PsuI	RGATCY	2 cut(s)	1040, 2080
PvuII	CAGCTG	1 cut(s)	615
RigI	GGCCGGCC	1 cut(s)	352
RsaI	GTAC	7 cut(s)	251, 428, 1382, 1482, 2230, 2260, 2668
RsaNI	GTAC	7 cut(s)	250, 427, 1381, 1481, 2229, 2259, 2667
RseI	CAYNNNNRTG	2 cut(s)	2322, 2379
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	9 cut(s)	381, 1266, 1370, 1893, 2012, 2367, 2463, 2609, 2624
SatI	GCNGC	8 cut(s)	68, 90, 224, 567, 1065, 1278, 1965, 2818
Sau3AI	GATC	8 cut(s)	202, 228, 741, 1040, 1531, 2038, 2080, 2857
Sau96I	GGNCC	4 cut(s)	529, 683, 1581, 1685
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	4 cut(s)	27, 791, 1554, 1947
ScrFI	CCNGG	5 cut(s)	345, 435, 1377, 1578, 2664
SduI	GDGCHC	2 cut(s)	1616, 1872
SfaNI	GCATC	6 cut(s)	1595, 1740, 1744, 1840, 2110, 2314
SfcI	CTRYAG	4 cut(s)	567, 1078, 1600, 2637
SfuI	TTCGAA	1 cut(s)	1780
SinI	GGWCC	3 cut(s)	529, 683, 1581
SmiMI	CAYNNNNRTG	2 cut(s)	2322, 2379
SmlI	CTYRAG	1 cut(s)	2011
SmoI	CTYRAG	1 cut(s)	2011
SseBI	AGGCCT	1 cut(s)	1899
SspI	AATATT	1 cut(s)	1540
StuI	AGGCCT	1 cut(s)	1899
StyD4I	CCNGG	5 cut(s)	343, 433, 1375, 1576, 2662
StyI	CCWWGG	2 cut(s)	302, 2799
TaaI	ACNGT	6 cut(s)	679, 1015, 1833, 1991, 2253, 2278
TaiI	ACGT	4 cut(s)	98, 1558, 1619, 2008
TaqI	TCGA	5 cut(s)	166, 766, 1007, 1317, 1780
TaqII	GACCGA	1 cut(s)	700
TatI	WGTACW	3 cut(s)	249, 426, 1480
TauI	GCSGC	5 cut(s)	92, 226, 1067, 1280, 2820
TfiI	GAWTC	9 cut(s)	168, 307, 355, 658, 876, 1663, 2659, 2672, 2726
Tru1I	TTAA	9 cut(s)	381, 1266, 1370, 1893, 2012, 2367, 2463, 2609, 2624
Tru9I	TTAA	9 cut(s)	381, 1266, 1370, 1893, 2012, 2367, 2463, 2609, 2624
TscAI	CASTG	5 cut(s)	328, 472, 1996, 2293, 2358
TseFI	GTSAC	6 cut(s)	196, 1045, 1057, 1256, 1617, 2596
TseI	GCWGC	3 cut(s)	67, 566, 1964
Tsp45I	GTSAC	6 cut(s)	196, 1045, 1057, 1256, 1617, 2596
TspDTI	ATGAA	8 cut(s)	850, 976, 993, 1245, 1488, 2015, 2076, 2825
TspGWI	ACGGA	4 cut(s)	348, 651, 1250, 2207
TspRI	CASTG	5 cut(s)	328, 472, 1996, 2293, 2358
Van91I	CCANNNNNTGG	2 cut(s)	214, 2837
Vha464I	CTTAAG	1 cut(s)	2011
VpaK11BI	GGWCC	3 cut(s)	529, 683, 1581
XapI	RAATTY	6 cut(s)	542, 549, 635, 1651, 1803, 2456
XbaI	TCTAGA	1 cut(s)	1150
XceI	RCATGY	1 cut(s)	2102
XcmI	CCANNNNNNNNNTGG	3 cut(s)	328, 612, 2158
XmaJI	CCTAGG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	2360
ZrmI	AGTACT	1 cut(s)	251
Zsp2I	ATGCAT	2 cut(s)	1759, 1855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.