Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8316781.1

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 770

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8316781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

attgctgagaagtcattggcggagttgaaactcactgaggcagctaaaatgagagctgggagttacagtggaggaatgaaacgtcgcctcagtgttgcaatagcctttattggtgacccgaagttggttattttagatgaaccgacaaccggtatagaccccataacaagaaggcatgtctgggacatcatacaggaggccaagaaagggcgttcaattgtcctaacaacccattcaatggaagaagctgacattctaagtgaccggataggaatcatggcaaaggggaggctccgttgcattggaacttcaatcagactgaagtcacggtttgggagtggttttattgctaatgtgagcttaaggggaggcgctgatagccaaagtcatgaatctgtgaagcagttctttaaataccatttggatgttttacacaaagaagagaccgactgctatctgacttttgttattcctcaggaaaaagagggacgtttgacggtaaccatttctctttccattttgttttatagaaaccttcttttgcctttggttcctgtattgatccgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

189

Amino Acids

21.11

Weight (kDa)

9.54

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	238
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	4 cut(s)	124, 149, 207, 238
AflII	CTTAAG	1 cut(s)	361
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	28, 216, 237, 312
AluBI	AGCT	4 cut(s)	44, 56, 248, 360
AluI	AGCT	4 cut(s)	44, 56, 248, 360
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	556
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	375
BfrI	CTTAAG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	293, 552
BoxI	GACNNNNGTC	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	437
BsaWI	WCCGGW	2 cut(s)	149, 264
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 280, 310
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 149, 207, 238
Bse118I	RCCGGY	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	272
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	4 cut(s)	124, 149, 207, 238
BseMII	CTCAG	3 cut(s)	27, 103, 488
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	150, 265
BslFI	GGGAC	2 cut(s)	197, 501
BslI	CCNNNNNNNGG	4 cut(s)	124, 149, 207, 238
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	2 cut(s)	197, 501
BsnI	GGCC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	561
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	3 cut(s)	28, 102, 487
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	293, 552
BspPI	GGATC	1 cut(s)	556
BspTI	CTTAAG	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	68, 330, 499
Bst6I	CTCTTC	1 cut(s)	435
BstAFI	CTTAAG	1 cut(s)	361
BstDEI	CTNAG	5 cut(s)	6, 36, 89, 257, 474
BstEII	GGTNACC	2 cut(s)	113, 499
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	1 cut(s)	564
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	1 cut(s)	561
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	179
BstPAI	GACNNNNGTC	1 cut(s)	322
BstPI	GGTNACC	2 cut(s)	113, 499
BstV1I	GCAGC	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	3 cut(s)	33, 73, 97
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	149
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	3 cut(s)	176, 277, 389
CviJI	RGCY	8 cut(s)	44, 56, 104, 200, 248, 292, 360, 381
CviKI_1	RGCY	8 cut(s)	44, 56, 104, 200, 248, 292, 360, 381
DdeI	CTNAG	5 cut(s)	6, 36, 89, 257, 474
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
DraI	TTTAAA	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	474
Eco91I	GGTNACC	2 cut(s)	113, 499
EcoO65I	GGTNACC	2 cut(s)	113, 499
FaeI	CATG	3 cut(s)	179, 280, 392
FaiI	YATR	7 cut(s)	155, 164, 177, 191, 278, 390, 528
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	2 cut(s)	197, 501
FatI	CATG	3 cut(s)	175, 276, 388
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	42
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	150, 265
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	179, 280, 392
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	2 cut(s)	273, 392
HpaII	CCGG	2 cut(s)	150, 265
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	317, 459, 566
Hpy188III	TCNNGA	2 cut(s)	389, 476
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	165, 545
HpyCH4III	ACNGT	3 cut(s)	68, 330, 499
HpyCH4IV	ACGT	2 cut(s)	82, 490
HpyCH4V	TGCA	2 cut(s)	98, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	5 cut(s)	6, 36, 89, 257, 474
HpySE526I	ACGT	2 cut(s)	82, 490
Hsp92II	CATG	3 cut(s)	179, 280, 392
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	561
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	6 cut(s)	42, 163, 166, 179, 278, 461
Lsp1109I	GCAGC	1 cut(s)	53
MaeII	ACGT	2 cut(s)	82, 490
MaeIII	GTNAC	5 cut(s)	62, 113, 260, 324, 499
MalI	GATC	1 cut(s)	563
MboI	GATC	1 cut(s)	561
MboII	GAAGA	2 cut(s)	254, 452
MfeI	CAATTG	1 cut(s)	216
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	8 cut(s)	31, 65, 98, 190, 282, 362, 478, 483
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	2 cut(s)	362, 411
MslI	CAYNNNNRTG	1 cut(s)	423
MspCI	CTTAAG	1 cut(s)	361
MspI	CCGG	2 cut(s)	150, 265
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	3 cut(s)	179, 280, 392
NlaIV	GGNNCC	2 cut(s)	293, 552
NmuCI	GTSAC	3 cut(s)	113, 260, 324
NspI	RCATGY	1 cut(s)	179
PagI	TCATGA	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	273, 392
PflMI	CCANNNNNTGG	1 cut(s)	238
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	43
PshAI	GACNNNNGTC	1 cut(s)	322
PspEI	GGTNACC	2 cut(s)	113, 499
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	293, 552
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	362, 411
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	561
SetI	ASST	7 cut(s)	46, 58, 85, 250, 362, 493, 537
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	68, 330, 499
TaiI	ACGT	2 cut(s)	85, 493
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	273, 392
Tru1I	TTAA	2 cut(s)	362, 411
Tru9I	TTAA	2 cut(s)	362, 411
TscAI	CASTG	3 cut(s)	40, 73, 97
TseFI	GTSAC	3 cut(s)	113, 260, 324
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	3 cut(s)	113, 260, 324
TspDTI	ATGAA	3 cut(s)	92, 153, 405
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	3 cut(s)	40, 73, 97
Van91I	CCANNNNNTGG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	361
XceI	RCATGY	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.