Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Forward (+)

66335017 .. 66341048

Gene Structure 6032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2967 bp

ATGGGTTTGCAGAGCGGAGTCCCATTGCTGTTTCAGCAATTCAAGGCTCTGTTCCGGAAGAACCTGCTGCTGGCATGGCGGAAGAAGGCGGCGACGTTCGTCCAGCTCTTCTCGTCCTTGTTCTTCGTCTTCCTCCTCTTCTGTATCCAGAAGGCCATGATGGCTCGATTCGCCTCCTCCACCACTTACAAGAGCGTCACCGATCCCCAGCCTCTGGTTGCGCCGCCGATCCCGCCCTGCGAGGACAAGTACTACATCCACAAGCCCTGCTTTGACTTTGTGTGGAGCGGAAATGACAGCCCTAGGATTCGGAGCATTGCCACTGCTATCATGGCTAACAATCCCGGCCGGCCGATTCCGTCGGTAAAGGTCAAATCATTTAAAACAAAAGCTGATGTAGATGTATGGCTATTTAGTAATCCTATGTACTGCCCCGGAGCTTTGCATTTTGTGGAAAGAAATGCCAGTGTTATTAGTTATGGCCTACAGACCAACTCTACTCCTCTTGCAAAACAAGGGCAATTTGAGGACCCCACATTCAAATTTCAAATTCCCCTTCAGATTGCTGCAGAGCGTGAAATTGCTAGGTCTTTGATTGGAGTTCCAAACTTCAGCTGGGTTGTTGCGCTGAAAGAATTTGCACACCCTTCAAGGGAGATTCCGTCTGCATTGCAGACAGTAGGACCGACCTTCTTTCTTGCAACTTCCATGTTTGGTTTTGTGTTTCAAATGAGTTCTTTGATCACAGAAAAAGAACTAAAGCTTCGACAGGCAATGACAATTATGGGTCTTTATGACTCTGCATACTGGTTCTCATGGCTCACATGGGAGGGAATTATCACACTTCTCTCATCACTTTTCATCACTCTGTTTGGAATCATATTTCAGTTTGATATGTTCCTGAAAAACAATTTTGCGGTCATCTTCCTCATTTTCTTTCTTTTTCAACTCAATATGATTGGTTTTGCCTTTATGTTATCGGCATTCATAAGCAAGTCATCTTCATCGACAACTGTGGGTTTCTCTATATATATTGTTGGATCTGTCACCCAGGCAAGCTTCCTCAGGTTTGAAATTTATAGATTAGGGGTTATTGGCTCAATGGTAATAACAGAACCCATTTTTTCATCGCAGATTGTCACAGCCGCTGGATTTCCCTACGGCCAAAACATCCAGAAAAGGTATAGAATAATGTGGTCATTATTCCCTCCAAATCTTCTTGCCAAAGCTCTAGAGATACTCTCTGGTGCAACATCTCCCCCTTATGATATGGGCATAAAATGGAGTGGAATAACAAAGTGTCCACCAAATGAAACGGACTGCGTTATAACAATTAGTGACATTTTTAAATGGCTGGCGGCAACATTCTTTCTCTGGTTTGTATTGGCTATCTACTTCGATAATATCATCCCTAATGTATCTGGTGTCAGAAAATCAGTTTTTTACTTTTTAAATCCTGGGTACTGGCTAGGGAAGGGTGGAAAAGTGGAAGAGGGTGGCATTTGCAGTTGCATAGGTTCAGTTCCAGAACAGGAGCCACTTACTCCAGATGATGAAGATGTACTTGAAGAAGAGAACATTGTAAAACAACAAACTAGCGAGGGCATAGTTGATCCAAATATTGCAGTTCAGATACGTGGCCTCTCAAAATCATATCCAGGGACCACAAAAATTGGTTGCTGTAGATGCAAGAGCACGTCACCTTACCATGCTCTGAAGGGTCTATGGGTGAATTTTTCCAAGAATCAGCTATTTTGTTTACTTGGGCCAAATGGAGCTGGGAAGACCACCACAATCAATTGTTTGACTGGCATCACACCCGTTACTGGCGGAGATGCATTGATTTATAGGAACTCTGTTCGAAGCTCTGTTGGCATGGCTAAAATTCGGCAAATTATAGGAGTTTGTCCACAGTTTGATATTCTTTGGGATGCATTATCTGGGCAAGAGCACCTCCACCTGTTTGCTAGTATTAAAGGCCTATCCCCAGCTTCAATAAAAGTGGTTGCTCAGAAGTCATTGGTAGAAGTAAGACTCACCGAGGCAGCCAAAATTAGAGCTGGGAGTTACAGTGGAGGAATGAAACGTCGCTTAAGTGTGGCAATAGCCCTTATTGGTGATCCAAAGTTAGTCATCTTAGATGAACCGACAACTGGTATGGATCCAATAACTAGAAGACATGTGTGGGACATCATTGAGGATGCAAAAAAGGGGCGTGCAATTGTCCTAACCACTCACTCAATGGAAGAAGCTGACATTTTAGGTGATAGGATAGGAATAATGGCAAAGGGTAGGCTCCGTTGCATTGGTACTTCAATCAGGCTGAAATCACGGTTTGGTACTGGCTTTATTGCTACTGTTAGTTTCAGTGAAAGCACCAATGGACAAAGCCCTCCACATGGGGATGCACTTACTACACCTCACCATGAGGCAGTGAAGCAGTTCTTTAAATATCACTTGGATGTTTTACCGAAAGAAGAGAACAAAGCCTTTCTGACTTTTGTTATTCCTCATGACAGAGAGGCACTTCTGACGAAATTTTTTAAGGAGCTTCAAGATAGAGAAATTGAGTTTGGTATCTCAGACATCCAACTGGGTCTTACAACTCTTGAAGAAGTTTTCTTGAATATCGCAAGGCAGGCAGAGCTAGAAACTGCTACGGCTGAGGGGAGGTTGGTCACTCTCACATTAACATCCGGAGCCTTAATCGAGATACCTGTAGGAGCTAGGTTTATTGGGATTCCAGGTACAGAATCCACAGAAAATCCAAGAGGAGTTATGGTAGAAGTTTACTGGGTGCAAGATGATTCCGGTTCCCTCTGCATTTCAGGCCACTCACCTGAAACTCCAATACCTCCAAATGTTGAACCAATACCTTCTTTGGCACCTACTTCACGCCGAAGTCGGTTACCAGTTCATGGAGTTGTAATCCACCCCGATCAAATCAGTAATACCACCTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

988

Amino Acids

109.39

Weight (kDa)

8.65

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	221 - 463	1.7e-11	ABC-2 family transporter protein
ABC_tran	PF00005	573 - 718	1.8e-23	ABC transporter
AAA_21	PF13304	673 - 750	2.2e-09	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA11_C	PF25158	873 - 927	1.6e-30	ABC transporter A family member 11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1328
Acc36I	ACCTGC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	2884
AccB7I	CCANNNNNTGG	2 cut(s)	214, 2918
AccBSI	CCGCTC	2 cut(s)	15, 288
AccIII	TCCGGA	2 cut(s)	54, 2696
AclWI	GGATC	7 cut(s)	197, 223, 1048, 1607, 2114, 2156, 2169
AcoI	YGGCCR	3 cut(s)	346, 350, 1162
AcsI	RAATTY	7 cut(s)	542, 549, 635, 1074, 1732, 1884, 2537
AcuI	CTGAAG	3 cut(s)	542, 595, 1736
AfaI	GTAC	7 cut(s)	251, 428, 1463, 1563, 2311, 2341, 2749
AfiI	CCNNNNNNNGG	7 cut(s)	70, 214, 652, 1826, 2153, 2399, 2918
AflII	CTTAAG	1 cut(s)	2092
AflIII	ACRYGT	1 cut(s)	2179
AjiI	CACGTC	1 cut(s)	1698
AjnI	CCWGG	4 cut(s)	1050, 1456, 1657, 2743
AjuI	GAANNNNNNNTTGG	2 cut(s)	2556, 2588
Alw21I	GWGCWC	2 cut(s)	1697, 1953
AlwI	GGATC	7 cut(s)	197, 223, 1048, 1607, 2114, 2156, 2169
AlwNI	CAGNNNCTG	2 cut(s)	214, 1148
Aor13HI	TCCGGA	2 cut(s)	54, 2696
AoxI	GGCC	9 cut(s)	153, 346, 350, 481, 1162, 1639, 1766, 1978, 2830
ApeKI	GCWGC	3 cut(s)	67, 566, 2045
ApoI	RAATTY	7 cut(s)	542, 549, 635, 1074, 1732, 1884, 2537
Asp700I	GAANNNNTTC	1 cut(s)	2441
AspA2I	CCTAGG	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	223, 628
AspS9I	GGNCC	4 cut(s)	529, 683, 1662, 1766
AsuC2I	CCSGG	2 cut(s)	345, 435
AsuHPI	GGTGA	9 cut(s)	190, 1039, 1692, 1741, 2029, 2129, 2276, 2414, 2829
AsuII	TTCGAA	1 cut(s)	1861
AvaII	GGWCC	3 cut(s)	529, 683, 1662
AvrII	CCTAGG	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	1064
BamHI	GGATCC	1 cut(s)	2161
BanI	GGYRCC	1 cut(s)	2884
BbsI	GAAGAC	3 cut(s)	121, 1790, 2182
Bbv12I	GWGCWC	2 cut(s)	1697, 1953
BbvCI	CCTCAGC	1 cut(s)	2664
BbvI	GCAGC	3 cut(s)	54, 553, 2057
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	2 cut(s)	1177, 2676
BciT130I	CCWGG	4 cut(s)	1052, 1458, 1659, 2745
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	741
BcnI	CCSGG	2 cut(s)	345, 435
BfaI	CTAG	9 cut(s)	303, 585, 1232, 1469, 1596, 1968, 2172, 2648, 2727
BfmI	CTRYAG	4 cut(s)	485, 567, 1681, 2718
BfrI	CTTAAG	1 cut(s)	2092
BfuAI	ACCTGC	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	155
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	7 cut(s)	68, 90, 224, 567, 1146, 1359, 2046
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	7 cut(s)	69, 91, 225, 568, 1147, 1360, 2047
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	6 cut(s)	345, 435, 1052, 1458, 1659, 2745
Bme18I	GGWCC	3 cut(s)	529, 683, 1662
BmgBI	CACGTC	1 cut(s)	1698
BmgT120I	GGNCC	4 cut(s)	529, 683, 1662, 1766
BmiI	GGNNCC	8 cut(s)	531, 1536, 1663, 2163, 2297, 2701, 2815, 2886
BmrFI	CCNGG	6 cut(s)	345, 435, 1052, 1458, 1659, 2745
BmrI	ACTGGG	2 cut(s)	2603, 2803
BmsI	GCATC	6 cut(s)	1676, 1821, 1825, 1921, 2191, 2395
BmuI	ACTGGG	2 cut(s)	2603, 2803
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	3 cut(s)	121, 1790, 2182
BplI	GAGNNNNNCTC	2 cut(s)	1226, 1258
BpmI	CTGGAG	1 cut(s)	1530
Bpu10I	CCTNAGC	1 cut(s)	2664
Bpu14I	TTCGAA	1 cut(s)	1861
BpuMI	CCSGG	2 cut(s)	345, 435
BsaAI	YACGTR	1 cut(s)	1637
BsaJI	CCNNGG	6 cut(s)	302, 433, 1050, 1457, 1658, 2040
BsaWI	WCCGGW	3 cut(s)	54, 2696, 2810
BsaXI	ACNNNNNCTCC	6 cut(s)	647, 677, 2056, 2086, 2766, 2796
Bsc4I	CCNNNNNNNGG	7 cut(s)	70, 214, 652, 1826, 2153, 2399, 2918
Bse118I	RCCGGY	1 cut(s)	348
Bse21I	CCTNAGG	1 cut(s)	1064
Bse3DI	GCAATG	4 cut(s)	23, 315, 668, 780
BseAI	TCCGGA	2 cut(s)	54, 2696
BseBI	CCWGG	4 cut(s)	1052, 1458, 1659, 2745
BseDI	CCNNGG	6 cut(s)	302, 433, 1050, 1457, 1658, 2040
BseGI	GGATG	9 cut(s)	255, 1170, 1407, 1936, 2206, 2410, 2467, 2586, 2693
BseLI	CCNNNNNNNGG	7 cut(s)	70, 214, 652, 1826, 2153, 2399, 2918
BseMI	GCAATG	4 cut(s)	23, 315, 668, 780
BseMII	CTCAG	4 cut(s)	1078, 2024, 2595, 2655
BseRI	GAGGAG	4 cut(s)	125, 166, 492, 2787
BseX3I	CGGCCG	2 cut(s)	346, 350
BseXI	GCAGC	3 cut(s)	54, 553, 2057
BseYI	CCCAGC	5 cut(s)	207, 615, 1778, 1987, 2060
Bsh1285I	CGRYCG	2 cut(s)	349, 353
BshFI	GGCC	9 cut(s)	155, 348, 352, 483, 1164, 1641, 1768, 1980, 2832
BshNI	GGYRCC	1 cut(s)	2884
BsiEI	CGRYCG	2 cut(s)	349, 353
BsiHKAI	GWGCWC	2 cut(s)	1697, 1953
BsiSI	CCGG	6 cut(s)	55, 345, 349, 435, 2697, 2811
BslFI	GGGAC	3 cut(s)	5, 1675, 2201
BslI	CCNNNNNNNGG	7 cut(s)	70, 214, 652, 1826, 2153, 2399, 2918
BsmFI	GGGAC	3 cut(s)	5, 1675, 2201
BsmI	GAATGC	1 cut(s)	983
BsnI	GGCC	9 cut(s)	155, 348, 352, 483, 1164, 1641, 1768, 1980, 2832
Bsp119I	TTCGAA	1 cut(s)	1861
Bsp1286I	GDGCHC	2 cut(s)	1697, 1953
Bsp13I	TCCGGA	2 cut(s)	54, 2696
Bsp143I	GATC	8 cut(s)	202, 228, 741, 1040, 1612, 2119, 2161, 2938
BspANI	GGCC	9 cut(s)	155, 348, 352, 483, 1164, 1641, 1768, 1980, 2832
BspCNI	CTCAG	4 cut(s)	1077, 2023, 2594, 2656
BspEI	TCCGGA	2 cut(s)	54, 2696
BspHI	TCATGA	1 cut(s)	2512
BspLI	GGNNCC	8 cut(s)	531, 1536, 1663, 2163, 2297, 2701, 2815, 2886
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	7 cut(s)	197, 223, 1048, 1607, 2114, 2156, 2169
BspQI	GCTCTTC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	1861
BspT107I	GGYRCC	1 cut(s)	2884
BspTI	CTTAAG	1 cut(s)	2092
BsrBI	CCGCTC	2 cut(s)	15, 288
BsrDI	GCAATG	4 cut(s)	23, 315, 668, 780
BsrFI	RCCGGY	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	6 cut(s)	302, 433, 1050, 1457, 1658, 2040
BssMI	GATC	8 cut(s)	202, 228, 741, 1040, 1612, 2119, 2161, 2938
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	4 cut(s)	1052, 1458, 1659, 2745
Bst4CI	ACNGT	6 cut(s)	679, 1015, 1914, 2072, 2334, 2359
Bst6I	CTCTTC	5 cut(s)	113, 143, 1485, 1566, 2472
BstAFI	CTTAAG	1 cut(s)	2092
BstBAI	YACGTR	1 cut(s)	1637
BstBI	TTCGAA	1 cut(s)	1861
BstC8I	GCNNGC	6 cut(s)	72, 350, 1057, 1356, 2217, 2640
BstDEI	CTNAG	5 cut(s)	1064, 2010, 2137, 2581, 2664
BstEII	GGTNACC	1 cut(s)	2907
BstF5I	GGATG	9 cut(s)	255, 1170, 1407, 1936, 2206, 2410, 2467, 2586, 2693
BstHHI	GCGC	2 cut(s)	223, 628
BstKTI	GATC	8 cut(s)	205, 231, 744, 1043, 1615, 2122, 2164, 2941
BstMBI	GATC	8 cut(s)	202, 228, 741, 1040, 1612, 2119, 2161, 2938
BstMCI	CGRYCG	2 cut(s)	349, 353
BstNI	CCWGG	4 cut(s)	1052, 1458, 1659, 2745
BstNSI	RCATGY	1 cut(s)	2183
BstPAI	GACNNNNGTC	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	2907
BstSCI	CCNGG	6 cut(s)	343, 433, 1050, 1456, 1657, 2743
BstSFI	CTRYAG	4 cut(s)	485, 567, 1681, 2718
BstV1I	GCAGC	3 cut(s)	54, 553, 2057
BstV2I	GAAGAC	3 cut(s)	121, 1790, 2182
BstX2I	RGATCY	2 cut(s)	1040, 2161
BstYI	RGATCY	2 cut(s)	1040, 2161
BstZI	CGGCCG	2 cut(s)	346, 350
Bsu36I	CCTNAGG	1 cut(s)	1064
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	9 cut(s)	155, 348, 352, 483, 1164, 1641, 1768, 1980, 2832
BtgZI	GCGATG	1 cut(s)	1113
BtrI	CACGTC	1 cut(s)	1698
BtsCI	GGATG	9 cut(s)	255, 1170, 1407, 1936, 2206, 2410, 2467, 2586, 2693
BtsI	GCAGTG	2 cut(s)	321, 2439
BtsIMutI	CAGTG	5 cut(s)	321, 472, 2077, 2374, 2439
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	6 cut(s)	72, 350, 1057, 1356, 2217, 2640
CaiI	CAGNNNCTG	2 cut(s)	214, 1148
CciI	TCATGA	1 cut(s)	2512
CfoI	GCGC	2 cut(s)	223, 628
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	4 cut(s)	529, 683, 1662, 1766
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	7 cut(s)	250, 427, 1462, 1562, 2310, 2340, 2748
CspCI	CAANNNNNGTGG	4 cut(s)	1654, 1689, 1983, 2018
CviQI	GTAC	7 cut(s)	250, 427, 1462, 1562, 2310, 2340, 2748
DdeI	CTNAG	5 cut(s)	1064, 2010, 2137, 2581, 2664
DpnI	GATC	8 cut(s)	204, 230, 743, 1042, 1614, 2121, 2163, 2940
DpnII	GATC	8 cut(s)	202, 228, 741, 1040, 1612, 2119, 2161, 2938
DraI	TTTAAA	4 cut(s)	382, 1348, 1452, 2449
EaeI	YGGCCR	3 cut(s)	346, 350, 1162
EagI	CGGCCG	2 cut(s)	346, 350
Eam1104I	CTCTTC	5 cut(s)	113, 143, 1485, 1566, 2472
EarI	CTCTTC	5 cut(s)	113, 143, 1485, 1566, 2472
EciI	GGCGGA	2 cut(s)	94, 1845
EclXI	CGGCCG	2 cut(s)	346, 350
Eco130I	CCWWGG	1 cut(s)	302
Eco147I	AGGCCT	1 cut(s)	1980
Eco47I	GGWCC	3 cut(s)	529, 683, 1662
Eco52I	CGGCCG	2 cut(s)	346, 350
Eco57I	CTGAAG	3 cut(s)	542, 595, 1736
Eco81I	CCTNAGG	1 cut(s)	1064
Eco91I	GGTNACC	1 cut(s)	2907
EcoO109I	RGGNCCY	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	2907
EcoRII	CCWGG	4 cut(s)	1050, 1456, 1657, 2743
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	2 cut(s)	1840, 1936
ErhI	CCWWGG	1 cut(s)	302
FalI	AAGNNNNNCTT	6 cut(s)	254, 286, 1548, 1580, 2429, 2461
FaqI	GGGAC	3 cut(s)	5, 1675, 2201
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	741
Fnu4HI	GCNGC	7 cut(s)	68, 90, 224, 567, 1146, 1359, 2046
FokI	GGATG	9 cut(s)	242, 1157, 1394, 1943, 2213, 2417, 2474, 2573, 2680
FseI	GGCCGGCC	1 cut(s)	352
Fsp4HI	GCNGC	7 cut(s)	68, 90, 224, 567, 1146, 1359, 2046
FspBI	CTAG	9 cut(s)	303, 585, 1232, 1469, 1596, 1968, 2172, 2648, 2727
GlaI	GCGC	2 cut(s)	222, 627
GluI	GCNGC	7 cut(s)	68, 90, 224, 567, 1146, 1359, 2046
GsaI	CCCAGC	5 cut(s)	211, 619, 1782, 1991, 2064
GsuI	CTGGAG	1 cut(s)	1530
HaeIII	GGCC	9 cut(s)	155, 348, 352, 483, 1164, 1641, 1768, 1980, 2832
HapII	CCGG	6 cut(s)	55, 345, 349, 435, 2697, 2811
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	223, 628
Hin6I	GCGC	2 cut(s)	221, 626
HinP1I	GCGC	2 cut(s)	221, 626
HindIII	AAGCTT	2 cut(s)	761, 1057
HpaII	CCGG	6 cut(s)	55, 345, 349, 435, 2697, 2811
HphI	GGTGA	9 cut(s)	190, 1039, 1692, 1741, 2029, 2129, 2276, 2414, 2829
Hpy166II	GTNNAC	4 cut(s)	1304, 1760, 1910, 2791
Hpy188I	TCNGA	9 cut(s)	312, 561, 1430, 1632, 1716, 2013, 2496, 2532, 2584
Hpy8I	GTNNAC	4 cut(s)	1304, 1760, 1910, 2791
Hpy99I	CGWCG	3 cut(s)	97, 364, 2091
HpyAV	CCTTC	8 cut(s)	79, 145, 566, 657, 700, 1468, 1711, 2886
HpyCH4III	ACNGT	6 cut(s)	679, 1015, 1914, 2072, 2334, 2359
HpyCH4IV	ACGT	4 cut(s)	95, 1636, 1697, 2086
HpyF3I	CTNAG	5 cut(s)	1064, 2010, 2137, 2581, 2664
HpySE526I	ACGT	4 cut(s)	95, 1636, 1697, 2086
HspAI	GCGC	2 cut(s)	221, 626
Kpn2I	TCCGGA	2 cut(s)	54, 2696
KroI	GCCGGC	1 cut(s)	348
KroNI	GCCGGC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	8 cut(s)	202, 228, 741, 1040, 1612, 2119, 2161, 2938
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	9 cut(s)	285, 312, 437, 1534, 1775, 2301, 2548, 2699, 2723
Lsp1109I	GCAGC	3 cut(s)	54, 553, 2057
LweI	GCATC	6 cut(s)	1676, 1821, 1825, 1921, 2191, 2395
MaeI	CTAG	9 cut(s)	303, 585, 1232, 1469, 1596, 1968, 2172, 2648, 2727
MaeII	ACGT	4 cut(s)	95, 1636, 1697, 2086
MaeIII	GTNAC	9 cut(s)	196, 1045, 1138, 1337, 1698, 1822, 2066, 2677, 2907
MalI	GATC	8 cut(s)	204, 230, 743, 1042, 1614, 2121, 2163, 2940
MbiI	CCGCTC	2 cut(s)	15, 288
MboI	GATC	8 cut(s)	202, 228, 741, 1040, 1612, 2119, 2161, 2938
MfeI	CAATTG	2 cut(s)	1798, 2220
MflI	RGATCY	2 cut(s)	1040, 2161
MhlI	GDGCHC	2 cut(s)	1697, 1953
MlyI	GAGTC	3 cut(s)	27, 791, 2028
MmeI	TCCRAC	2 cut(s)	1018, 2614
Mph1103I	ATGCAT	2 cut(s)	1840, 1936
MroI	TCCGGA	2 cut(s)	54, 2696
MroNI	GCCGGC	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	2441
MseI	TTAA	9 cut(s)	381, 1347, 1451, 1974, 2093, 2448, 2544, 2690, 2705
MslI	CAYNNNNRTG	2 cut(s)	2403, 2460
MspA1I	CMGCKG	2 cut(s)	615, 1148
MspCI	CTTAAG	1 cut(s)	2092
MspI	CCGG	6 cut(s)	55, 345, 349, 435, 2697, 2811
MspR9I	CCNGG	6 cut(s)	345, 435, 1052, 1458, 1659, 2745
MunI	CAATTG	2 cut(s)	1798, 2220
Mva1269I	GAATGC	1 cut(s)	983
MvaI	CCWGG	4 cut(s)	1052, 1458, 1659, 2745
NaeI	GCCGGC	1 cut(s)	350
NciI	CCSGG	2 cut(s)	345, 435
NdeII	GATC	8 cut(s)	202, 228, 741, 1040, 1612, 2119, 2161, 2938
NgoMIV	GCCGGC	1 cut(s)	348
NlaIV	GGNNCC	8 cut(s)	531, 1536, 1663, 2163, 2297, 2701, 2815, 2886
NmuCI	GTSAC	6 cut(s)	196, 1045, 1138, 1337, 1698, 2677
NsiI	ATGCAT	2 cut(s)	1840, 1936
NspI	RCATGY	1 cut(s)	2183
NspV	TTCGAA	1 cut(s)	1861
PagI	TCATGA	1 cut(s)	2512
PceI	AGGCCT	1 cut(s)	1980
PciI	ACATGT	1 cut(s)	2179
PciSI	GCTCTTC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	983
PdiI	GCCGGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	2441
PfeI	GAWTC	9 cut(s)	168, 307, 355, 658, 876, 1744, 2740, 2753, 2807
PflMI	CCANNNNNTGG	2 cut(s)	214, 2918
PkrI	GCNGC	7 cut(s)	69, 91, 225, 568, 1147, 1360, 2047
PleI	GAGTC	3 cut(s)	26, 791, 2028
PpsI	GAGTC	3 cut(s)	26, 791, 2028
Ppu21I	YACGTR	1 cut(s)	1637
PpuMI	RGGWCCY	1 cut(s)	529
PscI	ACATGT	1 cut(s)	2179
PshAI	GACNNNNGTC	1 cut(s)	98
PsiI	TTATAA	1 cut(s)	1328
Psp5II	RGGWCCY	1 cut(s)	529
Psp6I	CCWGG	4 cut(s)	1050, 1456, 1657, 2743
PspEI	GGTNACC	1 cut(s)	2907
PspFI	CCCAGC	5 cut(s)	207, 615, 1778, 1987, 2060
PspGI	CCWGG	4 cut(s)	1050, 1456, 1657, 2743
PspN4I	GGNNCC	8 cut(s)	531, 1536, 1663, 2163, 2297, 2701, 2815, 2886
PspPI	GGNCC	4 cut(s)	529, 683, 1662, 1766
PspPPI	RGGWCCY	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	2 cut(s)	214, 1148
PsuI	RGATCY	2 cut(s)	1040, 2161
PvuII	CAGCTG	1 cut(s)	615
RigI	GGCCGGCC	1 cut(s)	352
RsaI	GTAC	7 cut(s)	251, 428, 1463, 1563, 2311, 2341, 2749
RsaNI	GTAC	7 cut(s)	250, 427, 1462, 1562, 2310, 2340, 2748
RseI	CAYNNNNRTG	2 cut(s)	2403, 2460
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	9 cut(s)	381, 1347, 1451, 1974, 2093, 2448, 2544, 2690, 2705
SatI	GCNGC	7 cut(s)	68, 90, 224, 567, 1146, 1359, 2046
Sau3AI	GATC	8 cut(s)	202, 228, 741, 1040, 1612, 2119, 2161, 2938
Sau96I	GGNCC	4 cut(s)	529, 683, 1662, 1766
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	3 cut(s)	27, 791, 2028
ScrFI	CCNGG	6 cut(s)	345, 435, 1052, 1458, 1659, 2745
SduI	GDGCHC	2 cut(s)	1697, 1953
SfaNI	GCATC	6 cut(s)	1676, 1821, 1825, 1921, 2191, 2395
SfcI	CTRYAG	4 cut(s)	485, 567, 1681, 2718
SfuI	TTCGAA	1 cut(s)	1861
SinI	GGWCC	3 cut(s)	529, 683, 1662
SmiMI	CAYNNNNRTG	2 cut(s)	2403, 2460
SmlI	CTYRAG	1 cut(s)	2092
SmoI	CTYRAG	1 cut(s)	2092
SseBI	AGGCCT	1 cut(s)	1980
SspI	AATATT	1 cut(s)	1621
SspMI	CTAG	9 cut(s)	303, 585, 1232, 1469, 1596, 1968, 2172, 2648, 2727
StuI	AGGCCT	1 cut(s)	1980
StyD4I	CCNGG	6 cut(s)	343, 433, 1050, 1456, 1657, 2743
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	6 cut(s)	679, 1015, 1914, 2072, 2334, 2359
TaiI	ACGT	4 cut(s)	98, 1639, 1700, 2089
TaqI	TCGA	6 cut(s)	166, 766, 1007, 1398, 1861, 2709
TaqII	GACCGA	1 cut(s)	700
TatI	WGTACW	3 cut(s)	249, 426, 1561
TauI	GCSGC	4 cut(s)	92, 226, 1148, 1361
TfiI	GAWTC	9 cut(s)	168, 307, 355, 658, 876, 1744, 2740, 2753, 2807
Tru1I	TTAA	9 cut(s)	381, 1347, 1451, 1974, 2093, 2448, 2544, 2690, 2705
Tru9I	TTAA	9 cut(s)	381, 1347, 1451, 1974, 2093, 2448, 2544, 2690, 2705
TscAI	CASTG	5 cut(s)	328, 472, 2077, 2374, 2439
TseFI	GTSAC	6 cut(s)	196, 1045, 1138, 1337, 1698, 2677
TseI	GCWGC	3 cut(s)	67, 566, 2045
Tsp45I	GTSAC	6 cut(s)	196, 1045, 1138, 1337, 1698, 2677
TspDTI	ATGAA	9 cut(s)	850, 976, 993, 1116, 1326, 1569, 2096, 2157, 2906
TspGWI	ACGGA	4 cut(s)	348, 651, 1331, 2288
TspRI	CASTG	5 cut(s)	328, 472, 2077, 2374, 2439
Van91I	CCANNNNNTGG	2 cut(s)	214, 2918
Vha464I	CTTAAG	1 cut(s)	2092
VpaK11BI	GGWCC	3 cut(s)	529, 683, 1662
XapI	RAATTY	7 cut(s)	542, 549, 635, 1074, 1732, 1884, 2537
XbaI	TCTAGA	1 cut(s)	1231
XceI	RCATGY	1 cut(s)	2183
XcmI	CCANNNNNNNNNTGG	3 cut(s)	328, 612, 2239
XmaJI	CCTAGG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	2441
XspI	CTAG	9 cut(s)	303, 585, 1232, 1469, 1596, 1968, 2172, 2648, 2727
ZrmI	AGTACT	1 cut(s)	251
Zsp2I	ATGCAT	2 cut(s)	1840, 1936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.