Rmu_ssc0000131.1_g000001

ABC transporter A family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000131.1
Physical Location & Seq
Forward (+)
51 .. 1358
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000131.1_g000001.1.cds

Sequence Viewer

Length: 756 bp
atgtttggttttgtgtttcaaatgagttctttgatcacggaaaaagaactaaagcttcgacaggcaatgacaattatgggtctttatgactctgcatactggttctcatggctcacatgggagggaattatcacacttctctcatcactttttatcactctgtttggaatcatatttcagtttgatatgttcctgaaaaacaattttgcggtcatcttcctcattttctttctttttcaactcaatatgattggttttgcctttatgttatcggcattcataagcaagtcatcttcatcgacaactgtgggtttctccatatatattgttggatctgtcacccagattgtcacagccgctggatttccctacagccaaaacatccagaaaaggtatagaataatgtggtcattattccctccaaatcttcttgccaaagctctagacatactctctggtgcaacatctcccccttatgatatgggcataaaatggagtggaataacaaagtgtccaccaaatgaaacggactgcgttataacaattggtgacatttttaaatggctggcggcaacattctttctctggtttgtattggctatctacttcgataatatcatcccaaatgtatctggtgtcagaaaatcagttttttactttttaaatcctgggtactggctagggaagggtggaaaagtggaaggtattaataagactgtaattcagtttgtgcttcagtttccatttgttgaatga

Protein Analysis

251

Amino Acids

28.58

Weight (kDa)

9.0

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AciI CCGC 3 cut(s) 209, 357, 569
AclWI GGATC 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 719
AfaI GTAC 1 cut(s) 674
AgsI TTSAA 3 cut(s) 20, 239, 752
AjnI CCWGG 1 cut(s) 667
AluBI AGCT 2 cut(s) 55, 440
AluI AGCT 2 cut(s) 55, 440
AlwI GGATC 1 cut(s) 340
AlwNI CAGNNNCTG 1 cut(s) 359
AseI ATTAAT 1 cut(s) 708
AsuHPI GGTGA 2 cut(s) 331, 560
BciT130I CCWGG 1 cut(s) 669
BclI TGATCA 1 cut(s) 33
BfaI CTAG 2 cut(s) 443, 680
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 2 cut(s) 357, 570
BlsI GCNGC 2 cut(s) 358, 571
Bme1390I CCNGG 1 cut(s) 669
BmrFI CCNGG 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 668
Bse1I ACTGG 2 cut(s) 104, 680
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 668
BseGI GGATG 2 cut(s) 381, 618
BseMI GCAATG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 104, 680
BsmI GAATGC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 33, 332
BspACI CCGC 3 cut(s) 209, 357, 569
BspPI GGATC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 2 cut(s) 104, 680
BssECI CCNNGG 1 cut(s) 668
BssMI GATC 2 cut(s) 33, 332
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 2 cut(s) 307, 718
BstC8I GCNNGC 1 cut(s) 567
BstF5I GGATG 2 cut(s) 381, 618
BstKTI GATC 2 cut(s) 36, 335
BstMBI GATC 2 cut(s) 33, 332
BstNI CCWGG 1 cut(s) 669
BstSCI CCNGG 1 cut(s) 667
BstSFI CTRYAG 1 cut(s) 370
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BtsCI GGATG 2 cut(s) 381, 618
Cac8I GCNNGC 1 cut(s) 567
CaiI CAGNNNCTG 1 cut(s) 359
Csp6I GTAC 1 cut(s) 673
CviAII CATG 2 cut(s) 108, 117
CviJI RGCY 8 cut(s) 55, 112, 356, 375, 440, 565, 599, 679
CviKI_1 RGCY 8 cut(s) 55, 112, 356, 375, 440, 565, 599, 679
CviQI GTAC 1 cut(s) 673
DpnI GATC 2 cut(s) 35, 334
DpnII GATC 2 cut(s) 33, 332
DraI TTTAAA 2 cut(s) 559, 663
Eco57I CTGAAG 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 667
FaeI CATG 2 cut(s) 111, 120
FatI CATG 2 cut(s) 107, 116
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 357, 570
FokI GGATG 2 cut(s) 368, 605
Fsp4HI GCNGC 2 cut(s) 357, 570
FspBI CTAG 2 cut(s) 443, 680
GluI GCNGC 2 cut(s) 357, 570
Hin1II CATG 2 cut(s) 111, 120
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 89, 168
HphI GGTGA 2 cut(s) 331, 560
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 1 cut(s) 641
Hpy188III TCNNGA 3 cut(s) 193, 385, 443
Hpy8I GTNNAC 1 cut(s) 515
HpyAV CCTTC 2 cut(s) 679, 695
HpyCH4III ACNGT 2 cut(s) 307, 718
HpyCH4V TGCA 2 cut(s) 95, 461
Hsp92II CATG 2 cut(s) 111, 120
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 2 cut(s) 33, 332
MaeI CTAG 2 cut(s) 443, 680
MaeIII GTNAC 3 cut(s) 337, 349, 548
MalI GATC 2 cut(s) 35, 334
MboI GATC 2 cut(s) 33, 332
MboII GAAGA 3 cut(s) 208, 285, 419
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 332
MluCI AATT 5 cut(s) 72, 126, 202, 543, 720
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 3 cut(s) 115, 230, 429
MseI TTAA 3 cut(s) 558, 662, 708
MspA1I CMGCKG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 669
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 669
NdeII GATC 2 cut(s) 33, 332
NlaIII CATG 2 cut(s) 111, 120
NmuCI GTSAC 3 cut(s) 337, 349, 548
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 2 cut(s) 358, 571
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PshBI ATTAAT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 667
PspGI CCWGG 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 332
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
SaqAI TTAA 3 cut(s) 558, 662, 708
SatI GCNGC 2 cut(s) 357, 570
Sau3AI GATC 2 cut(s) 33, 332
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 669
SetI ASST 4 cut(s) 57, 395, 442, 706
SfcI CTRYAG 1 cut(s) 370
Sse9I AATT 5 cut(s) 72, 126, 202, 543, 720
SsiI CCGC 3 cut(s) 209, 357, 569
SspMI CTAG 2 cut(s) 443, 680
StyD4I CCNGG 1 cut(s) 667
TaaI ACNGT 2 cut(s) 307, 718
TaqI TCGA 3 cut(s) 58, 299, 609
TasI AATT 5 cut(s) 72, 126, 202, 543, 720
TauI GCSGC 2 cut(s) 359, 572
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 3 cut(s) 558, 662, 708
Tru9I TTAA 3 cut(s) 558, 662, 708
TseFI GTSAC 3 cut(s) 337, 349, 548
Tsp45I GTSAC 3 cut(s) 337, 349, 548
TspDTI ATGAA 3 cut(s) 268, 285, 537
TspGWI ACGGA 2 cut(s) 53, 542
VspI ATTAAT 1 cut(s) 708
XbaI TCTAGA 1 cut(s) 442
XspI CTAG 2 cut(s) 443, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.