Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

20274290 .. 20275960

Gene Structure 1671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0115000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAGCGAGATCGAGCTCTTGTTTGTGCTCCTCCGTCGCGGATTATGGCTGATCCTCTGGTTGCTAGGTGCATTTATTCTGGGAAAATACTGTTCTGCTGTGCTAGAATACATAAGTTAGATTGTGTTGAGATTTCTGTTTCAAGGATTGGTGGAAGTTGCTGCAAAACGTGTTCAGTGGATAGTTGTTCGGGAGTTGTTGATGAAGACGATTATTTGGGGGAGGCATTTAGGACTGAAGTTCAGAAGTCGTATTTGTCTGATGAGTGGAGTTCTTATATTCATCATGTCGGGCAGAAGTTTCATGGTGCAACTGAGTTTTGTAAGAAGCTCAGGAAGTATGCAGTTGTAGTTGGTTTCGAGTTTGTATTTTTGAGAAATGATTTGGACCGTATTCATGCAATTTGTTCAAATGTTGGAACCGAAGGTTGTGATTGGCATCTTCGCGCTTTTGCATCATCTGCCAATGGTTGCCTTTATGTAAGAGAGTTGAATAATATTCACACTTATAAGGGTATAGTTAGGACTCAAAAGCACAAGCTTTTGGGATCCAAGGTTGTCAAGACTTGCATTGTTGCCGATGTTAGCTATAATCTTTCATTGAAACCAAGGGAAATTATGAGTAAGTTCAAGTCAACATATGAGTTTGATATTTCCTACAAGGTTGCCTTGAAAGCAAAGCAAAGGGCTAAAGAAGCAATTCATGGTTCCGATGCAGATTCATTCAGCATGTTATCTTGGTATAAGGAAGCAGTTTTGGAGAGTAATCTGGGCTCTTCTTTTGTGTTGGAAGTTGACCCATCTACTAATCGTTTTGAGAGGCTATTTGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

278

Amino Acids

31.31

Weight (kDa)

8.46

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	96 - 156	1.2e-07	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AccII	CGCG	2 cut(s)	40, 447
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	3 cut(s)	47, 543, 556
AcuI	CTGAAG	1 cut(s)	258
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	144, 411, 493, 604, 631, 673
AluBI	AGCT	5 cut(s)	17, 331, 541, 588, 833
AluI	AGCT	5 cut(s)	17, 331, 541, 588, 833
Alw21I	GWGCWC	2 cut(s)	19, 31
AlwI	GGATC	3 cut(s)	47, 543, 556
ApeKI	GCWGC	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	388
BamHI	GGATCC	1 cut(s)	548
BanII	GRGCYC	2 cut(s)	19, 776
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	19, 31
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	808
BfaI	CTAG	2 cut(s)	66, 105
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	3 cut(s)	421, 550, 709
BmsI	GCATC	3 cut(s)	448, 464, 703
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	552, 608
Bse8I	GATNNNNATC	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	552, 608
BseJI	GATNNNNATC	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	306, 346
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	40, 447
BsiHKAI	GWGCWC	2 cut(s)	19, 31
Bsp1286I	GDGCHC	3 cut(s)	19, 31, 776
Bsp143I	GATC	3 cut(s)	10, 52, 548
BspACI	CCGC	1 cut(s)	40
BspCNI	CTCAG	2 cut(s)	307, 345
BspFNI	CGCG	2 cut(s)	40, 447
BspLI	GGNNCC	3 cut(s)	421, 550, 709
BspPI	GGATC	3 cut(s)	47, 543, 556
BspQI	GCTCTTC	1 cut(s)	781
BssECI	CCNNGG	2 cut(s)	552, 608
BssMI	GATC	3 cut(s)	10, 52, 548
BssT1I	CCWWGG	2 cut(s)	552, 608
Bst4CI	ACNGT	2 cut(s)	93, 392
Bst6I	CTCTTC	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstDEI	CTNAG	3 cut(s)	315, 332, 834
BstFNI	CGCG	2 cut(s)	40, 447
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	3 cut(s)	13, 55, 551
BstMBI	GATC	3 cut(s)	10, 52, 548
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 674, 695
BstNSI	RCATGY	1 cut(s)	733
BstUI	CGCG	2 cut(s)	40, 447
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BtsIMutI	CAGTG	1 cut(s)	183
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	388
CviAII	CATG	5 cut(s)	287, 305, 398, 704, 730
CviJI	RGCY	9 cut(s)	17, 50, 331, 541, 588, 689, 774, 823, 833
CviKI_1	RGCY	9 cut(s)	17, 50, 331, 541, 588, 689, 774, 823, 833
DdeI	CTNAG	3 cut(s)	315, 332, 834
DpnI	GATC	3 cut(s)	12, 54, 550
DpnII	GATC	3 cut(s)	10, 52, 548
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	552, 608
Eco24I	GRGCYC	2 cut(s)	19, 776
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	552, 608
EcoT38I	GRGCYC	2 cut(s)	19, 776
ErhI	CCWWGG	2 cut(s)	552, 608
FaeI	CATG	5 cut(s)	290, 308, 401, 707, 733
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FatI	CATG	5 cut(s)	286, 304, 397, 703, 729
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	1 cut(s)	163
FriOI	GRGCYC	2 cut(s)	19, 776
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	66, 105
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	5 cut(s)	290, 308, 401, 707, 733
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	2 cut(s)	636, 796
HindII	GTYRAC	2 cut(s)	636, 796
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	2 cut(s)	526, 719
Hpy166II	GTNNAC	2 cut(s)	636, 796
Hpy188I	TCNGA	3 cut(s)	246, 262, 712
Hpy188III	TCNNGA	3 cut(s)	192, 334, 562
Hpy8I	GTNNAC	2 cut(s)	636, 796
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	2 cut(s)	93, 392
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	8 cut(s)	72, 165, 311, 344, 401, 455, 570, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 674, 695
HpyF3I	CTNAG	3 cut(s)	315, 332, 834
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	290, 308, 401, 707, 733
HspAI	GCGC	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	10, 52, 548
LguI	GCTCTTC	1 cut(s)	781
LmnI	GCTCC	2 cut(s)	4, 34
LpnPI	CCDG	4 cut(s)	44, 66, 319, 755
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	3 cut(s)	448, 464, 703
MaeI	CTAG	2 cut(s)	66, 105
MaeII	ACGT	1 cut(s)	170
MalI	GATC	3 cut(s)	12, 54, 550
MboI	GATC	3 cut(s)	10, 52, 548
MboII	GAAGA	3 cut(s)	218, 434, 768
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	19, 31, 776
MluCI	AATT	3 cut(s)	402, 615, 699
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	2 cut(s)	397, 768
MnlI	CCTC	4 cut(s)	42, 66, 217, 813
MroXI	GAANNNNTTC	1 cut(s)	699
MvnI	CGCG	2 cut(s)	40, 447
MwoI	GCNNNNNNNGC	3 cut(s)	461, 674, 695
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	3 cut(s)	10, 52, 548
NlaIII	CATG	5 cut(s)	290, 308, 401, 707, 733
NlaIV	GGNNCC	3 cut(s)	421, 550, 709
NspI	RCATGY	1 cut(s)	733
PciSI	GCTCTTC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	719
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PsiI	TTATAA	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	19
PspN4I	GGNNCC	3 cut(s)	421, 550, 709
PspPI	GGNCC	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	781
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	3 cut(s)	10, 52, 548
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	520
SduI	GDGCHC	3 cut(s)	19, 31, 776
SfaNI	GCATC	3 cut(s)	448, 464, 703
SinI	GGWCC	1 cut(s)	388
Sse9I	AATT	3 cut(s)	402, 615, 699
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	66, 105
SstI	GAGCTC	1 cut(s)	19
StyI	CCWWGG	2 cut(s)	552, 608
TaaI	ACNGT	2 cut(s)	93, 392
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	13, 360
TasI	AATT	3 cut(s)	402, 615, 699
TfiI	GAWTC	1 cut(s)	719
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	7 cut(s)	219, 272, 293, 386, 588, 692, 711
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	388
XceI	RCATGY	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	66, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.