Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

67377088 .. 67379084

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAGTTCACTGACTGGTTTTCCGTTACTGCTACAACAATTCAAGGCTCTGTTAAACAAGAACCTCCTCCTCTCATGGCGCAACAAGACCGCCACTTTTCTCCAGCTCCTCTCTACCTTATTCTTCATCTTCCTCATCTTCTGCTTTCAGAAGGCCTACAACGCTCAGACTCAGTCTTCCACTGCGTACCGGAGCGTCACCGATCCTCAGCCGCTGGTTTCGCTTCCGATCCCGCCCTGCGAGGACAAGTTCTCTATCAAAACGCTGTGCTATGATTTTGTGTGGAGCGGAGATCAGAGCCCTAGGATTCGGAGCGTTGTCGATGCCATCATGGCTAATAATCCCGGAAGGCCAATCCCGGCGACAAAGAACCCGGCTGAAGTAGATGAATGGCTGTATAAGAATCCTTTGTATTGCCCAGGAGCTTTGCATTTTGTGGAAAGAAATGCCACTGTGATTAGCTATGGCCTGCAGACTAATTCTACTTCTGTTGAAAAACAAGGGAAAACTGAGGATCCCACATTTAAATTTCAAATACCACTTCAGATTGCTGCGGAGCGTGAGATTTTGAATTTTAGCACTTATATGACGCTTTGTTCAGATTCAAAATTTAGCTGGGTTGCTGCATTCAAGAAATTTGCACACCCTGCAATGGAGAGGCCTTCTGCAATGGATAACATGGGACCAAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

232

Amino Acids

26.15

Weight (kDa)

8.94

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	5 cut(s)	90, 212, 233, 288, 554
AclWI	GGATC	4 cut(s)	197, 223, 509, 522
AcsI	RAATTY	4 cut(s)	527, 571, 608, 635
AcuI	CTGAAG	2 cut(s)	399, 527
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	652
AgsI	TTSAA	6 cut(s)	43, 494, 533, 571, 606, 631
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	4 cut(s)	106, 425, 462, 615
AluI	AGCT	4 cut(s)	106, 425, 462, 615
AlwI	GGATC	4 cut(s)	197, 223, 509, 522
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	4 cut(s)	153, 350, 466, 659
ApeKI	GCWGC	2 cut(s)	551, 623
ApoI	RAATTY	4 cut(s)	527, 571, 608, 635
AspA2I	CCTAGG	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	683
AsuC2I	CCSGG	3 cut(s)	345, 359, 374
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	683
AvrII	CCTAGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	538, 610
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	420
BcnI	CCSGG	3 cut(s)	345, 359, 374
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	3 cut(s)	212, 552, 624
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	3 cut(s)	213, 553, 625
Bme1390I	CCNGG	4 cut(s)	345, 359, 374, 420
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	2 cut(s)	516, 684
BmrFI	CCNGG	4 cut(s)	345, 359, 374, 420
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	3 cut(s)	345, 359, 374
BsaJI	CCNNGG	3 cut(s)	302, 418, 686
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	2 cut(s)	657, 675
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	302, 418, 686
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	2 cut(s)	657, 675
BseMII	CTCAG	4 cut(s)	179, 185, 221, 501
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	3 cut(s)	56, 59, 98
BseXI	GCAGC	2 cut(s)	538, 610
BseYI	CCCAGC	1 cut(s)	615
BshFI	GGCC	4 cut(s)	155, 352, 468, 661
BsiSI	CCGG	4 cut(s)	190, 345, 359, 374
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	4 cut(s)	155, 352, 468, 661
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	202, 228, 292, 514
BspACI	CCGC	5 cut(s)	90, 212, 233, 288, 554
BspANI	GGCC	4 cut(s)	155, 352, 468, 661
BspCNI	CTCAG	4 cut(s)	178, 184, 220, 502
BspLI	GGNNCC	2 cut(s)	516, 684
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	4 cut(s)	197, 223, 509, 522
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	657, 675
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	302, 418, 686
BssMI	GATC	4 cut(s)	202, 228, 292, 514
BssT1I	CCWWGG	2 cut(s)	302, 686
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	454
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	4 cut(s)	165, 171, 207, 510
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	4 cut(s)	205, 231, 295, 517
BstMBI	GATC	4 cut(s)	202, 228, 292, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 220, 332, 647
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	4 cut(s)	343, 357, 372, 418
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	538, 610
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	4 cut(s)	155, 352, 468, 661
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	8, 180, 450
Cac8I	GCNNGC	1 cut(s)	470
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	683
CseI	GACGC	2 cut(s)	184, 598
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	75, 331, 679
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	165, 171, 207, 510
DpnI	GATC	4 cut(s)	204, 230, 294, 516
DpnII	GATC	4 cut(s)	202, 228, 292, 514
DraI	TTTAAA	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	302, 686
Eco147I	AGGCCT	2 cut(s)	155, 661
Eco24I	GRGCYC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	399, 527
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	302, 686
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	302, 686
FaeI	CATG	3 cut(s)	78, 334, 682
FaiI	YATR	8 cut(s)	76, 273, 332, 399, 465, 585, 587, 680
FatI	CATG	3 cut(s)	74, 330, 678
FauI	CCCGC	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	212, 552, 624
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	212, 552, 624
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	3 cut(s)	212, 552, 624
GsaI	CCCAGC	1 cut(s)	619
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	4 cut(s)	155, 352, 468, 661
HapII	CCGG	4 cut(s)	190, 345, 359, 374
HgaI	GACGC	2 cut(s)	184, 598
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	78, 334, 682
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	4 cut(s)	169, 307, 403, 602
HpaII	CCGG	4 cut(s)	190, 345, 359, 374
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	7 cut(s)	150, 168, 228, 297, 312, 546, 601
Hpy188III	TCNNGA	1 cut(s)	631
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	3 cut(s)	145, 342, 672
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	6 cut(s)	430, 472, 626, 641, 650, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 220, 332, 647
HpyF3I	CTNAG	4 cut(s)	165, 171, 207, 510
Hsp92II	CATG	3 cut(s)	78, 334, 682
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	202, 228, 292, 514
LmnI	GCTCC	6 cut(s)	111, 192, 285, 312, 422, 556
Lsp1109I	GCAGC	2 cut(s)	538, 610
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	24, 196
MalI	GATC	4 cut(s)	204, 230, 294, 516
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	4 cut(s)	202, 228, 292, 514
MboII	GAAGA	4 cut(s)	115, 121, 130, 168
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	6 cut(s)	38, 478, 527, 571, 608, 635
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	9 cut(s)	74, 77, 80, 119, 143, 216, 235, 505, 651
MseI	TTAA	2 cut(s)	53, 525
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	4 cut(s)	190, 345, 359, 374
MspR9I	CCNGG	4 cut(s)	345, 359, 374, 420
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	4 cut(s)	161, 220, 332, 647
NciI	CCSGG	3 cut(s)	345, 359, 374
NdeII	GATC	4 cut(s)	202, 228, 292, 514
NlaIII	CATG	3 cut(s)	78, 334, 682
NlaIV	GGNNCC	2 cut(s)	516, 684
NmuCI	GTSAC	1 cut(s)	196
PceI	AGGCCT	2 cut(s)	155, 661
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	3 cut(s)	307, 403, 602
PflFI	GACNNNGTC	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	213, 553, 625
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	516, 684
PspPI	GGNCC	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	53, 525
SatI	GCNGC	3 cut(s)	212, 552, 624
Sau3AI	GATC	4 cut(s)	202, 228, 292, 514
Sau96I	GGNCC	1 cut(s)	683
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	4 cut(s)	345, 359, 374, 420
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	6 cut(s)	66, 108, 119, 427, 464, 617
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	683
SmiI	ATTTAAAT	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	6 cut(s)	38, 478, 527, 571, 608, 635
SseBI	AGGCCT	2 cut(s)	155, 661
SsiI	CCGC	5 cut(s)	90, 212, 233, 288, 554
SspMI	CTAG	1 cut(s)	303
StuI	AGGCCT	2 cut(s)	155, 661
StyD4I	CCNGG	4 cut(s)	343, 357, 372, 418
StyI	CCWWGG	2 cut(s)	302, 686
SwaI	ATTTAAAT	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	1 cut(s)	321
TasI	AATT	6 cut(s)	38, 478, 527, 571, 608, 635
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	3 cut(s)	307, 403, 602
Tru1I	TTAA	2 cut(s)	53, 525
Tru9I	TTAA	2 cut(s)	53, 525
TscAI	CASTG	3 cut(s)	15, 187, 457
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	551, 623
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	115, 402
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	3 cut(s)	15, 187, 457
Tth111I	GACNNNGTC	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	4 cut(s)	527, 571, 608, 635
XmaJI	CCTAGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.