Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

20249258 .. 20250145

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0114900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGAAATACGAGGAGAGCAAGGGACTTATTTGATGCGGCGACGGTTGCTGATAAGAAGCACATTGCTGCATGGCATGGATGGGGAGTTTTAGAGCTAAAGCAAGGAAATATCAGCAAGGCAAGGCATCTGCTTGCCAAAGGTTTGAAATTTTGTGGTGGGAATGAGTACATATACCAGACACTGGCAGGATTGGAAGCTAAAGCAAGTCGCTATGAGCAGACTCAGTACTTGTTCAAGCAGGCCACTAAATGCAATCCCAAAAGCTGTGCTAGTTGGCTTGCATGGGCTCAAATGGAGATGCAACAGGAAAACAATTGTGCTGCTAGGCAACTTTTTGAGAGATCAATACAGGCAAGCCAAAAGAATAGGTTTGCATGGCATGTTTGGGGACTTTTTGAAGCAAAAAAGGGAAATGTTGAGAAGGGGAGAAAGTTATTAAAGATTGGCCATGCACTCAATCCAAGGGATCCAGTTTTCTTTCAGTCTCTTGCTTTATTGGAGTATGAATACTCAACTGCAAATCTTGCTCGACAGTTGTTCAGGCGAGCATCTGAGTTGGATCCAAGGCATCAACAAGTGTGGACGGTAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

199

Amino Acids

22.93

Weight (kDa)

9.87

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	4 cut(s)	464, 477, 557, 570
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	2 cut(s)	170, 230
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	3 cut(s)	148, 238, 401
AluBI	AGCT	3 cut(s)	97, 200, 267
AluI	AGCT	3 cut(s)	97, 200, 267
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	4 cut(s)	464, 477, 557, 570
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	243, 448
ApeKI	GCWGC	2 cut(s)	68, 323
ApoI	RAATTY	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	450
BamHI	GGATCC	2 cut(s)	469, 562
BanII	GRGCYC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	55, 310
BccI	CCATC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	2 cut(s)	273, 327
BisI	GCNGC	3 cut(s)	39, 69, 324
BlsI	GCNGC	3 cut(s)	40, 70, 325
BmcAI	AGTACT	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	471, 564
BmsI	GCATC	5 cut(s)	25, 136, 291, 560, 580
BsaJI	CCNNGG	2 cut(s)	464, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	189, 473
Bse3DI	GCAATG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	464, 566
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	239, 546
BseNI	ACTGG	2 cut(s)	189, 473
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	55, 310
BshFI	GGCC	2 cut(s)	245, 450
BslFI	GGGAC	2 cut(s)	38, 405
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	2 cut(s)	38, 405
BsnI	GGCC	2 cut(s)	245, 450
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	344, 469, 562
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	245, 450
BspCNI	CTCAG	2 cut(s)	238, 547
BspLI	GGNNCC	2 cut(s)	471, 564
BspPI	GGATC	4 cut(s)	464, 477, 557, 570
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	189, 473
BssECI	CCNNGG	2 cut(s)	464, 566
BssMI	GATC	3 cut(s)	344, 469, 562
BssT1I	CCWWGG	2 cut(s)	464, 566
Bst4CI	ACNGT	3 cut(s)	46, 537, 589
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	5 cut(s)	135, 243, 282, 358, 549
BstDEI	CTNAG	2 cut(s)	225, 555
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	3 cut(s)	347, 472, 565
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	3 cut(s)	344, 469, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 527
BstNSI	RCATGY	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	55, 310
BstX2I	RGATCY	2 cut(s)	469, 562
BstYI	RGATCY	2 cut(s)	469, 562
BsuRI	GGCC	2 cut(s)	245, 450
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	5 cut(s)	135, 243, 282, 358, 549
CaiI	CAGNNNCTG	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	169, 229
CspCI	CAANNNNNGTGG	2 cut(s)	563, 598
CviAII	CATG	6 cut(s)	72, 77, 285, 378, 383, 452
CviJI	RGCY	8 cut(s)	97, 200, 245, 267, 280, 290, 360, 450
CviKI_1	RGCY	8 cut(s)	97, 200, 245, 267, 280, 290, 360, 450
CviQI	GTAC	2 cut(s)	169, 229
DdeI	CTNAG	2 cut(s)	225, 555
DpnI	GATC	3 cut(s)	346, 471, 564
DpnII	GATC	3 cut(s)	344, 469, 562
EaeI	YGGCCR	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	464, 566
Eco24I	GRGCYC	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	464, 566
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	464, 566
FaeI	CATG	6 cut(s)	75, 80, 288, 381, 386, 455
FaqI	GGGAC	2 cut(s)	38, 405
FatI	CATG	6 cut(s)	71, 76, 284, 377, 382, 451
Fnu4HI	GCNGC	3 cut(s)	39, 69, 324
FokI	GGATG	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	3 cut(s)	39, 69, 324
FspBI	CTAG	2 cut(s)	273, 327
GluI	GCNGC	3 cut(s)	39, 69, 324
HaeIII	GGCC	2 cut(s)	245, 450
Hin1II	CATG	6 cut(s)	75, 80, 288, 381, 386, 455
HinfI	GANTC	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188I	TCNGA	1 cut(s)	556
Hpy8I	GTNNAC	1 cut(s)	585
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	3 cut(s)	46, 537, 589
HpyCH4V	TGCA	7 cut(s)	71, 255, 284, 304, 377, 455, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 527
HpyF3I	CTNAG	2 cut(s)	225, 555
Hsp92II	CATG	6 cut(s)	75, 80, 288, 381, 386, 455
Kzo9I	GATC	3 cut(s)	344, 469, 562
LpnPI	CCDG	8 cut(s)	170, 174, 191, 227, 293, 338, 486, 529
Lsp1109I	GCAGC	2 cut(s)	55, 310
LweI	GCATC	5 cut(s)	25, 136, 291, 560, 580
MaeI	CTAG	2 cut(s)	273, 327
MalI	GATC	3 cut(s)	346, 471, 564
MboI	GATC	3 cut(s)	344, 469, 562
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	2 cut(s)	469, 562
MhlI	GDGCHC	1 cut(s)	292
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	2 cut(s)	149, 316
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	1 cut(s)	6
Mox20I	TGGCCA	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	450
MunI	CAATTG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	47, 527
NdeII	GATC	3 cut(s)	344, 469, 562
NlaIII	CATG	6 cut(s)	75, 80, 288, 381, 386, 455
NlaIV	GGNNCC	2 cut(s)	471, 564
NspI	RCATGY	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	40, 70, 325
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	471, 564
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	469, 562
RsaI	GTAC	2 cut(s)	170, 230
RsaNI	GTAC	2 cut(s)	169, 229
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	3 cut(s)	39, 69, 324
Sau3AI	GATC	3 cut(s)	344, 469, 562
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	5 cut(s)	99, 145, 202, 269, 374
SfaNI	GCATC	5 cut(s)	25, 136, 291, 560, 580
Sse9I	AATT	2 cut(s)	149, 316
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	273, 327
StyI	CCWWGG	2 cut(s)	464, 566
TaaI	ACNGT	3 cut(s)	46, 537, 589
TaqI	TCGA	1 cut(s)	532
TasI	AATT	2 cut(s)	149, 316
TatI	WGTACW	2 cut(s)	168, 228
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	2 cut(s)	68, 323
TspDTI	ATGAA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	2 cut(s)	273, 327
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.