Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8148594.1

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 460

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8148594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgaggtcactgaccggttttccgctactgctgcaacaattcaaggctctgttcaacaagaacctcctcctcgcatggcgcaacaagtccgccacctttctccagctcctctctcccttattcttcatcttcctcatcttctgcttccagaaggcctacgacgctcagactcagtcttccactgcgtaccggagcgtcaccgatcctcagccgctggtttccccgccgatcccgccctgcgaggacaagttctctatcaaaacgccgtgctatgatttcgtgtggagcggagatcagagccctaggattcggagcgttgtcgatgccatcatggctaataatcccggaaggccaatcccggcgacaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

123

Amino Acids

13.93

Weight (kDa)

9.55

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	6 cut(s)	23, 90, 212, 224, 233, 288
AclWI	GGATC	2 cut(s)	197, 223
AfaI	GTAC	1 cut(s)	188
AgeI	ACCGGT	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	43, 55
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AlwI	GGATC	2 cut(s)	197, 223
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	2 cut(s)	153, 350
ApeKI	GCWGC	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	14
AspA2I	CCTAGG	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	81
AsuC2I	CCSGG	2 cut(s)	345, 359
AsuHPI	GGTGA	1 cut(s)	190
AvrII	CCTAGG	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	250
BcnI	CCSGG	2 cut(s)	345, 359
BfaI	CTAG	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	32, 212
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	2 cut(s)	33, 213
Bme1390I	CCNGG	2 cut(s)	345, 359
BmrFI	CCNGG	2 cut(s)	345, 359
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	2 cut(s)	345, 359
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	2 cut(s)	14, 189
Bse118I	RCCGGY	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	302
BseMII	CTCAG	3 cut(s)	179, 185, 221
BseRI	GAGGAG	3 cut(s)	56, 59, 98
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	2 cut(s)	155, 352
BshTI	ACCGGT	1 cut(s)	14
BsiSI	CCGG	4 cut(s)	15, 190, 345, 359
BsnI	GGCC	2 cut(s)	155, 352
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	202, 228, 292
BspACI	CCGC	6 cut(s)	23, 90, 212, 224, 233, 288
BspANI	GGCC	2 cut(s)	155, 352
BspCNI	CTCAG	3 cut(s)	178, 184, 220
BspPI	GGATC	2 cut(s)	197, 223
BsrBI	CCGCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	202, 228, 292
BssT1I	CCWWGG	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	165, 171, 207
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	205, 231, 295
BstMBI	GATC	3 cut(s)	202, 228, 292
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 161, 232, 332
BstSCI	CCNGG	2 cut(s)	343, 357
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	155, 352
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	8, 180
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	14
CseI	GACGC	2 cut(s)	170, 184
Csp6I	GTAC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	2 cut(s)	75, 331
CviJI	RGCY	7 cut(s)	47, 106, 155, 211, 300, 335, 352
CviKI_1	RGCY	7 cut(s)	47, 106, 155, 211, 300, 335, 352
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	165, 171, 207
DpnI	GATC	3 cut(s)	204, 230, 294
DpnII	GATC	3 cut(s)	202, 228, 292
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	302
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	2 cut(s)	78, 334
FaiI	YATR	3 cut(s)	76, 273, 332
FatI	CATG	2 cut(s)	74, 330
FauI	CCCGC	2 cut(s)	231, 240
Fnu4HI	GCNGC	2 cut(s)	32, 212
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	32, 212
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	2 cut(s)	32, 212
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	155, 352
HapII	CCGG	4 cut(s)	15, 190, 345, 359
HgaI	GACGC	2 cut(s)	170, 184
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	78, 334
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	169, 307
HpaII	CCGG	4 cut(s)	15, 190, 345, 359
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	168, 297, 312
Hpy188III	TCNNGA	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	145, 342
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 161, 232, 332
HpyF3I	CTNAG	3 cut(s)	165, 171, 207
Hsp92II	CATG	2 cut(s)	78, 334
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	202, 228, 292
LmnI	GCTCC	4 cut(s)	111, 192, 285, 312
LpnPI	CCDG	7 cut(s)	28, 116, 161, 200, 203, 250, 358
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	6, 196
MalI	GATC	3 cut(s)	204, 230, 294
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	3 cut(s)	202, 228, 292
MboII	GAAGA	4 cut(s)	115, 121, 130, 168
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	7 cut(s)	74, 77, 80, 119, 143, 216, 235
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	4 cut(s)	15, 190, 345, 359
MspR9I	CCNGG	2 cut(s)	345, 359
MwoI	GCNNNNNNNGC	4 cut(s)	31, 161, 232, 332
NciI	CCSGG	2 cut(s)	345, 359
NdeII	GATC	3 cut(s)	202, 228, 292
NlaIII	CATG	2 cut(s)	78, 334
NmuCI	GTSAC	2 cut(s)	6, 196
PceI	AGGCCT	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	307
PflFI	GACNNNGTC	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	343
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	33, 213
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	214
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	2 cut(s)	32, 212
Sau3AI	GATC	3 cut(s)	202, 228, 292
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	345, 359
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	4 cut(s)	8, 66, 98, 108
SfaNI	GCATC	1 cut(s)	313
Sse9I	AATT	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	6 cut(s)	23, 90, 212, 224, 233, 288
SspMI	CTAG	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	343, 357
StyI	CCWWGG	1 cut(s)	302
TaqI	TCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	38
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	307
TscAI	CASTG	2 cut(s)	15, 187
TseFI	GTSAC	2 cut(s)	6, 196
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	6, 196
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	15, 187
Tth111I	GACNNNGTC	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.