Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

18592661 .. 18595166

Gene Structure 2506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG106800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTAACAATCCCGGAAGGCCAATCCCGGCGACAAAGGTTAAATCGTTTAGAACCCCGGCTGAAGTAGATGAATGGCTGTATAAGAATCCTTTGTATTGCGCAGGAGCTTTGCATTTTGTGGAAAGAAATGCCACTGTGATTAGCTATGGCCTGCAGACTAATTCTACTTCTGTTGAAAAACAAGGGAAAACTGAGGATCCCACATTCAAATTTCAAATTCCACTTCAGATTGCTGCGGAGCGTGAGATTGGAGATTCAAAATTTAGCTGGGTTGTTGCATTCAAGGAATTTGCACACCCTGCAATGGAGAGGCCTTCTGCAATGGATAACATAGGACCAAGGTTTTTTTTCGCAGCTGCCATGTTTGGTTTTGTCTTTCAAATGACTTCTTTGATCACAGAGAAAGAACTTAAGCTGCGACAGGCAATGACAATGATGGGTCTTTATGATAGTGCATACTGGTTCTCATGGCTTGCATGGGAGGGAATTATTACACTACTCTCAGCTCTTTTCACAGTACTCTTTGGAATGATGTTTCGGTTTAATTTTTTCTTAAACAACAGCTTTGCAGTCTTATTCCTTGTTTTCTATCTTTTCCAACTCAATATGATTGGTTTTGCCTTTATGTTATCGGCCTTCATAAAAAAGTCATCTTCAACCACAACTGTCGGTTTCTCCATTTTTATCATTGGCTTTTTAATCCAGCTGGCTACATCAAACAACTATCCATACAATAAAAGCATTTCTAGGACTAAGCGAAACTTGTGGTCTCTATTTCCACCTAAACTTCTTTCCCAGGCTCTATATATACTCAGTGAGGCGACATCCACTCCTAAAAAGACTGGCATTAGCTGGAGTAGAAGGGCAAACTGCGGACCAGGGGATGAAAATTGTGTTATAACAATTGTATGTAAACACATTAGTTTTCATAACCAAACCATTACGTATACATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

320

Amino Acids

36.4

Weight (kDa)

9.44

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	113 - 270	1e-16	ABC-2 family transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	902
Acc16I	TGCGCA	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	950
AciI	CCGC	2 cut(s)	239, 876
AclWI	GGATC	2 cut(s)	194, 207
AcsI	RAATTY	4 cut(s)	212, 219, 263, 290
AcuI	CTGAAG	2 cut(s)	84, 212
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	7 cut(s)	179, 211, 218, 261, 286, 383, 660
AjnI	CCWGG	2 cut(s)	798, 880
AluBI	AGCT	9 cut(s)	110, 147, 270, 359, 418, 509, 567, 709, 855
AluI	AGCT	9 cut(s)	110, 147, 270, 359, 418, 509, 567, 709, 855
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	194, 207
AoxI	GGCC	4 cut(s)	20, 151, 314, 636
ApeKI	GCWGC	4 cut(s)	236, 356, 359, 418
ApoI	RAATTY	4 cut(s)	212, 219, 263, 290
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	338, 878
AsuC2I	CCSGG	3 cut(s)	15, 29, 59
AvaII	GGWCC	2 cut(s)	338, 878
BamHI	GGATCC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	223, 346, 368, 405
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	2 cut(s)	800, 882
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	3 cut(s)	15, 29, 59
BcoDI	GTCTC	1 cut(s)	777
BfaI	CTAG	1 cut(s)	750
BfmI	CTRYAG	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	4 cut(s)	237, 357, 360, 419
BlsI	GCNGC	4 cut(s)	238, 358, 361, 420
BmcAI	AGTACT	1 cut(s)	522
Bme1390I	CCNGG	5 cut(s)	15, 29, 59, 800, 882
Bme18I	GGWCC	2 cut(s)	338, 878
BmgT120I	GGNCC	2 cut(s)	338, 878
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	5 cut(s)	15, 29, 59, 800, 882
BpmI	CTGGAG	1 cut(s)	877
BpuMI	CCSGG	3 cut(s)	15, 29, 59
BsaAI	YACGTR	1 cut(s)	948
BsaI	GGTCTC	1 cut(s)	777
BsaJI	CCNNGG	4 cut(s)	57, 341, 798, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	467, 850
Bse3DI	GCAATG	3 cut(s)	312, 330, 435
BseBI	CCWGG	2 cut(s)	800, 882
BseDI	CCNNGG	4 cut(s)	57, 341, 798, 881
BseGI	GGATG	2 cut(s)	827, 892
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	3 cut(s)	312, 330, 435
BseMII	CTCAG	3 cut(s)	186, 519, 829
BseNI	ACTGG	2 cut(s)	467, 850
BseXI	GCAGC	4 cut(s)	223, 346, 368, 405
BseYI	CCCAGC	1 cut(s)	270
BshFI	GGCC	4 cut(s)	22, 153, 316, 638
BsiSI	CCGG	3 cut(s)	15, 29, 59
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	777
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	22, 153, 316, 638
Bso31I	GGTCTC	1 cut(s)	777
Bsp143I	GATC	2 cut(s)	199, 396
BspACI	CCGC	2 cut(s)	239, 876
BspANI	GGCC	4 cut(s)	22, 153, 316, 638
BspCNI	CTCAG	3 cut(s)	187, 518, 828
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	159
BspPI	GGATC	2 cut(s)	194, 207
BspTI	CTTAAG	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	777
BsrDI	GCAATG	3 cut(s)	312, 330, 435
BsrI	ACTGG	2 cut(s)	467, 850
BssECI	CCNNGG	4 cut(s)	57, 341, 798, 881
BssMI	GATC	2 cut(s)	199, 396
BssNAI	GTATAC	1 cut(s)	951
BssT1I	CCWWGG	1 cut(s)	341
Bst1107I	GTATAC	1 cut(s)	951
Bst2UI	CCWGG	2 cut(s)	800, 882
Bst4CI	ACNGT	3 cut(s)	139, 520, 670
BstAFI	CTTAAG	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	948
BstC8I	GCNNGC	3 cut(s)	155, 477, 711
BstDEI	CTNAG	4 cut(s)	195, 505, 756, 815
BstF5I	GGATG	2 cut(s)	827, 892
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	202, 399
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	2 cut(s)	199, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	2 cut(s)	800, 882
BstSCI	CCNGG	5 cut(s)	13, 27, 57, 798, 880
BstSFI	CTRYAG	1 cut(s)	155
BstSNI	TACGTA	1 cut(s)	948
BstV1I	GCAGC	4 cut(s)	223, 346, 368, 405
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BstZ17I	GTATAC	1 cut(s)	951
BsuRI	GGCC	4 cut(s)	22, 153, 316, 638
BtsCI	GGATG	2 cut(s)	827, 892
BtsIMutI	CAGTG	2 cut(s)	135, 823
Cac8I	GCNNGC	3 cut(s)	155, 477, 711
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	338, 878
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	3 cut(s)	364, 471, 480
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	4 cut(s)	195, 505, 756, 815
DpnI	GATC	2 cut(s)	201, 398
DpnII	GATC	2 cut(s)	199, 396
Eco105I	TACGTA	1 cut(s)	948
Eco130I	CCWWGG	1 cut(s)	341
Eco147I	AGGCCT	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	777
Eco47I	GGWCC	2 cut(s)	338, 878
Eco57I	CTGAAG	2 cut(s)	84, 212
EcoRII	CCWGG	2 cut(s)	798, 880
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	3 cut(s)	367, 474, 483
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FatI	CATG	3 cut(s)	363, 470, 479
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	950
Fnu4HI	GCNGC	4 cut(s)	237, 357, 360, 419
FokI	GGATG	2 cut(s)	814, 899
Fsp4HI	GCNGC	4 cut(s)	237, 357, 360, 419
FspBI	CTAG	1 cut(s)	750
FspI	TGCGCA	1 cut(s)	103
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	237, 357, 360, 419
GsaI	CCCAGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	877
HaeIII	GGCC	4 cut(s)	22, 153, 316, 638
HapII	CCGG	3 cut(s)	15, 29, 59
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	367, 474, 483
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	2 cut(s)	88, 257
HpaII	CCGG	3 cut(s)	15, 29, 59
Hpy166II	GTNNAC	2 cut(s)	917, 951
Hpy188I	TCNGA	1 cut(s)	231
Hpy8I	GTNNAC	2 cut(s)	917, 951
HpyAV	CCTTC	4 cut(s)	12, 327, 649, 858
HpyCH4III	ACNGT	3 cut(s)	139, 520, 670
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	9 cut(s)	115, 157, 281, 296, 305, 323, 458, 479, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	4 cut(s)	195, 505, 756, 815
HpySE526I	ACGT	1 cut(s)	947
Hsp92II	CATG	3 cut(s)	367, 474, 483
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	199, 396
LmnI	GCTCC	2 cut(s)	107, 241
Lsp1109I	GCAGC	4 cut(s)	223, 346, 368, 405
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	1 cut(s)	947
MalI	GATC	2 cut(s)	201, 398
MboI	GATC	2 cut(s)	199, 396
MboII	GAAGA	1 cut(s)	648
MfeI	CAATTG	1 cut(s)	906
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	9 cut(s)	163, 212, 219, 263, 290, 489, 547, 892, 906
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	4 cut(s)	190, 306, 478, 814
MseI	TTAA	5 cut(s)	42, 414, 546, 557, 701
MspA1I	CMGCKG	2 cut(s)	359, 709
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	3 cut(s)	15, 29, 59
MspR9I	CCNGG	5 cut(s)	15, 29, 59, 800, 882
MunI	CAATTG	1 cut(s)	906
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	2 cut(s)	800, 882
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	3 cut(s)	15, 29, 59
NdeII	GATC	2 cut(s)	199, 396
NlaIII	CATG	3 cut(s)	367, 474, 483
NlaIV	GGNNCC	1 cut(s)	201
NsbI	TGCGCA	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	316
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	88, 257
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	238, 358, 361, 420
Ppu21I	YACGTR	1 cut(s)	948
PsiI	TTATAA	1 cut(s)	902
Psp6I	CCWGG	2 cut(s)	798, 880
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	2 cut(s)	798, 880
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	338, 878
PstI	CTGCAG	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	2 cut(s)	359, 709
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
SaqAI	TTAA	5 cut(s)	42, 414, 546, 557, 701
SatI	GCNGC	4 cut(s)	237, 357, 360, 419
Sau3AI	GATC	2 cut(s)	199, 396
Sau96I	GGNCC	2 cut(s)	338, 878
ScaI	AGTACT	1 cut(s)	522
ScrFI	CCNGG	5 cut(s)	15, 29, 59, 800, 882
SfcI	CTRYAG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	338, 878
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SnaBI	TACGTA	1 cut(s)	948
Sse9I	AATT	9 cut(s)	163, 212, 219, 263, 290, 489, 547, 892, 906
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	2 cut(s)	239, 876
SspMI	CTAG	1 cut(s)	750
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	5 cut(s)	13, 27, 57, 798, 880
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	3 cut(s)	139, 520, 670
TaiI	ACGT	1 cut(s)	950
TasI	AATT	9 cut(s)	163, 212, 219, 263, 290, 489, 547, 892, 906
TatI	WGTACW	1 cut(s)	520
TfiI	GAWTC	2 cut(s)	88, 257
Tru1I	TTAA	5 cut(s)	42, 414, 546, 557, 701
Tru9I	TTAA	5 cut(s)	42, 414, 546, 557, 701
TscAI	CASTG	2 cut(s)	142, 823
TseI	GCWGC	4 cut(s)	236, 356, 359, 418
TspDTI	ATGAA	4 cut(s)	87, 631, 903, 920
TspRI	CASTG	2 cut(s)	142, 823
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	338, 878
XapI	RAATTY	4 cut(s)	212, 219, 263, 290
XmiI	GTMKAC	1 cut(s)	950
XspI	CTAG	1 cut(s)	750
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.