Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

2595193 .. 2600569

Gene Structure 5377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16124

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGATGGAATTAGTGAGCGGATTCCCGTTGCTCCTCCAGCAATTCACGGCCATGTTCAAGAAGAATCTCCTCCTCGCGTGGCGTCACAAAGTCGGCACCCTCATCCAGCTCTTCTCTTCATTCTTTTTCATTTTTCTCATCTTCTGCATCCAGAAAGCACTCAACGCTAACTCGGCGTCGTCCACGGGGTTCAAGACCATCAAGGACCCTAAGCCTCTGGCCTCGCTGCCGATCCCGCCCTGCGAGAAGAAGGATTTCATCAAGAAGCCTTGCTATGACTTCGTGTGGAGCGGCGATGGGAGCCGGGAGATCCAGACCATTGTGGACGGCATCATGGCTAACAACCCCGGCCGGCAGATCCCGTCGAGCAAGGTGAAAGGGTTTAAATCAAGAGATGAAGTAGACAAATGGCTGGCTGATAATCAAAAGATTTGCCCGGGAGCTTTGCATTTTGCGGTAAGAGATGACAAAGTGATTAGCTATGGCGTGCAGACTAATTCCACTCACGTAGCCAAAAGAAGGGAATTTGAAGATATCACCATGAAATTCCAAATTCCGCTTCAGATTGCCGCGGAGCGTGAGATTGCTAGGGTTCTGATTGGAGATCCGAAGTTTAGCTGGAATGTTGCTTTCAAGGAATTTCCACACCCTGCAAGGAAGTTGTACTCGGCAATTGAGTCAGAAGGACCAACCTTTTTCCTTGCAACCGCAATGTTTGGTTTTGTATTTCAAATGACATCCTTGATCACAGAGAAAGAACTAAAGCTTCGAGAGGCAATGACGATGATGGGTCTTTATGATACCGCCTACTGGTTATCATGGCTCACATGGGAGGGGATTATGACAGTTTTTTCATCACTTTTCATAGTTCTCTTTGGAATGATGTTTCAGTTTGACTTTTTCCTAAAGAACAATTTTGTAGTCCTATATCTCCTCTTCTTTCTTTTCCAACTGAATATGGACGTGACAAAATACTTTCCTTATGATATTAGGACCGCTAAAAAATATCAAATCATGTGGTCATTCTTCCCACCTAATCTTCTTGCCAAAGGTCTATTCATACTCGCTGATGCAACAGCCACTTCCCAAGATGATGGGATCAGGTTGAGTAATATAAGAAAGTGTGGACCAAATGAGCCAGGATGTGTTATGACAATTAGTGACATTTACAAATGGCTTGTGAGTTCATTCTTCCTCTGGTTTGTATTGGCTCTCTACTTCGATAACATTCTCGCAAATGCATCTGGTGTGAAAAAACCACTTTATTACTTTTTAACGCCCGGCTACTGGTTAGGGACAGGTGGGGTAAAAGTGAAAGAGGGTAAAAATGCAATACCAAATGATCATATTACTCCAGATGATGCGGATGTCCTTGAAGAGGAGCACCTTGTTAAACAACAATCTATGGAAGGCACACTTGATCCAAGAATTGCAGTTCAGATACGTGGCCTTGTAAAGACATATCCTGGGAAGAAAAGACCTTTTTGTTGTTGCTGCTGCTGCTGCTGCAAGGAGACTCCACCTTACAATGCTGTCCAGGGATTATGGGTGAACTTTGCAAAGGATCAGTTATTCTGTCTACTTGGACCTAACGGAGCTGGGAAGAGCACAACGATCAGTTGTTTAGTTGGTATCACACCATTTACTGGAGGAGATGCATTGGTTTATGACCATTCTGCCCGAAGCTCTGGTGGTATGGCAAATATTCGAAAACTTATAGGAGTTTGTCCACAGGTGACCTGCTCTAGCAATCCCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACACAAGCACCTCCAACTGTTCGCTACTATTAAAGGCCTACCCCCAGCTTCAATAGAAACGATTGCTGAGAAGTCATTGGCGGAGTTGAAACTCACTGAGGCAGCTAAAATGAGAGCTGGGAGTTACAGTGGAGGAATGAAACGTCGCCTCAGTGTTGCAATAGCCTTTATTGGTGACCCGAAGTTGGTTATTTTAGATGAACCGACAACCGGTATAGATCCCATAACAAGAAGGCATGTCTGGGACATCATACAGGAGGCCAAGAAAGGGCGTTCAATTGTCCTAACAACCCATTCAATGGAAGAAGCTGACATTCTAAGTGACCGGATAGGAATCATGGCAAAGGGGAGGCTCCGTTGCATTGGAACTTCAATCAGACTGAAGTCACGGTTTGGGAGTGGTTTTATTGCTAATGTGAGCTTAAGGGGAGGCGCTGATAGCCAAAGTCATGAATCTGTGAAGCAGTTCTTTAAATACCATTTGGATGTTTTACACAAAGAAGAGACCGACTGCTATCTGACTTTTGTTATTCCTCAGGAAAAAGAGGGACGTTTGACGAATTTTTTTGCTGAGCTTCAAGATAGGCAACATGAATTTGGTATCGCTGACATCCAACTCGGTCTCACAACTCTAGAAGAAGTTTTCTTGAATATATCAAGGCAAGCGGAGCTAGAAGCCGCCATGGCAGAAGGGAGGCTGGTTACTCTCACTTTAACGTCTGGAAAGTCAGTTGAGATACCCGTAGGAGCCGAGCATGCTTGGATTCCAGAAACAGAATCTGAAGAGCATCCAAAAGGGCTTATGGTAGAAGTTTACTGGGATCAAGATGAGTCTGGTAAACTCTGCATTGCTGGTCACTCAGCCGAAACTCCAGTACCTCTGAATGTTGATCCCATGAGTTTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

907

Amino Acids

101.5

Weight (kDa)

7.93

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	232 - 316	2.5e-10	ABC-2 family transporter protein
ABC_tran	PF00005	515 - 675	1.1e-19	ABC transporter
AAA_21	PF13304	630 - 707	3.2e-09	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA11_C	PF25158	819 - 873	9.2e-27	ABC transporter A family member 11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1748
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	2 cut(s)	1646, 2113
AccBSI	CCGCTC	2 cut(s)	18, 291
AccI	GTMKAC	2 cut(s)	402, 1579
AccII	CGCG	2 cut(s)	77, 572
AcoI	YGGCCR	2 cut(s)	48, 349
AcsI	RAATTY	6 cut(s)	524, 545, 552, 638, 2374, 2408
AcuI	CTGAAG	3 cut(s)	545, 2216, 2616
AcyI	GRCGYC	2 cut(s)	82, 176
AfaI	GTAC	2 cut(s)	665, 2691
AfiI	CCNNNNNNNGG	9 cut(s)	519, 810, 1287, 1378, 1646, 1999, 2024, 2082, 2113
AflII	CTTAAG	1 cut(s)	2236
AgeI	ACCGGT	1 cut(s)	2024
AjiI	CACGTC	1 cut(s)	964
AjnI	CCWGG	3 cut(s)	1138, 1465, 1536
AjuI	GAANNNNNNNTTGG	4 cut(s)	543, 575, 1040, 1072
Alw21I	GWGCWC	2 cut(s)	1386, 1610
Alw26I	GTCTC	3 cut(s)	1508, 2312, 2441
AlwNI	CAGNNNCTG	1 cut(s)	2594
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	6 cut(s)	48, 219, 349, 1447, 1849, 2073
ApeKI	GCWGC	7 cut(s)	226, 1494, 1497, 1500, 1503, 1506, 1916
ApoI	RAATTY	6 cut(s)	524, 545, 552, 638, 2374, 2408
AsiGI	ACCGGT	1 cut(s)	2024
Asp700I	GAANNNNTTC	2 cut(s)	254, 2279
AspLEI	GCGC	1 cut(s)	2249
AspS9I	GGNCC	5 cut(s)	205, 686, 993, 1127, 1586
AsuC2I	CCSGG	5 cut(s)	305, 348, 437, 438, 1281
AsuHPI	GGTGA	5 cut(s)	385, 529, 1561, 1747, 2000
AsuII	TTCGAA	1 cut(s)	1708
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	5 cut(s)	205, 686, 993, 1127, 1586
AxyI	CCTNAGG	1 cut(s)	2349
BaeI	ACNNNNGTAYC	2 cut(s)	2673, 2706
BanI	GGYRCC	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	1386, 1610
BbvI	GCAGC	7 cut(s)	213, 1481, 1484, 1487, 1490, 1493, 1928
BccI	CCATC	4 cut(s)	206, 290, 781, 1088
BceAI	ACGGC	2 cut(s)	63, 343
BciT130I	CCWGG	3 cut(s)	1140, 1467, 1538
BclI	TGATCA	2 cut(s)	744, 1342
BcnI	CCSGG	5 cut(s)	305, 348, 437, 438, 1281
BcoDI	GTCTC	3 cut(s)	1508, 2312, 2441
BfaI	CTAG	4 cut(s)	588, 1746, 2447, 2486
BfoI	RGCGCY	1 cut(s)	2250
BfrI	CTTAAG	1 cut(s)	2236
BfuAI	ACCTGC	1 cut(s)	1748
BglI	GCCNNNNNGGC	1 cut(s)	2498
BlpI	GCTNAGC	1 cut(s)	2385
Bme1390I	CCNGG	8 cut(s)	305, 348, 437, 438, 1140, 1281, 1467, 1538
Bme18I	GGWCC	5 cut(s)	205, 686, 993, 1127, 1586
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	964
BmgT120I	GGNCC	5 cut(s)	205, 686, 993, 1127, 1586
BmiI	GGNNCC	5 cut(s)	97, 207, 302, 2168, 2563
BmrFI	CCNGG	8 cut(s)	305, 348, 437, 438, 1140, 1281, 1467, 1538
BmrI	ACTGGG	1 cut(s)	2641
BmsI	GCATC	7 cut(s)	156, 339, 1060, 1250, 1351, 1645, 2611
BmuI	ACTGGG	1 cut(s)	2641
BoxI	GACNNNNGTC	1 cut(s)	2197
BpmI	CTGGAG	4 cut(s)	20, 1338, 1668, 2670
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	2385
Bpu14I	TTCGAA	1 cut(s)	1708
BpuMI	CCSGG	5 cut(s)	305, 348, 437, 438, 1281
BsaAI	YACGTR	2 cut(s)	508, 1445
BsaBI	GATNNNNATC	1 cut(s)	2147
BsaHI	GRCGYC	2 cut(s)	82, 176
BsaI	GGTCTC	2 cut(s)	2312, 2441
BsaJI	CCNNGG	7 cut(s)	183, 346, 436, 570, 1466, 1537, 2496
BsaWI	WCCGGW	2 cut(s)	2024, 2139
BsaXI	ACNNNNNCTCC	4 cut(s)	1927, 1957, 2155, 2185
Bsc4I	CCNNNNNNNGG	9 cut(s)	519, 810, 1287, 1378, 1646, 1999, 2024, 2082, 2113
Bse118I	RCCGGY	2 cut(s)	351, 2024
Bse1I	ACTGG	5 cut(s)	815, 1292, 1651, 2636, 2687
Bse21I	CCTNAGG	1 cut(s)	2349
Bse3DI	GCAATG	3 cut(s)	717, 783, 2661
Bse8I	GATNNNNATC	1 cut(s)	2147
BseBI	CCWGG	3 cut(s)	1140, 1467, 1538
BseDI	CCNNGG	7 cut(s)	183, 346, 436, 570, 1466, 1537, 2496
BseGI	GGATG	8 cut(s)	102, 147, 737, 1148, 1372, 2305, 2424, 2602
BseJI	GATNNNNATC	1 cut(s)	2147
BseLI	CCNNNNNNNGG	9 cut(s)	519, 810, 1287, 1378, 1646, 1999, 2024, 2082, 2113
BseMI	GCAATG	3 cut(s)	717, 783, 2661
BseMII	CTCAG	6 cut(s)	1872, 1902, 1978, 2363, 2376, 2688
BseNI	ACTGG	5 cut(s)	815, 1292, 1651, 2636, 2687
BseRI	GAGGAG	6 cut(s)	23, 59, 62, 923, 1394, 1665
BseX3I	CGGCCG	1 cut(s)	349
BseXI	GCAGC	7 cut(s)	213, 1481, 1484, 1487, 1490, 1493, 1928
BseYI	CCCAGC	3 cut(s)	1598, 1858, 1931
BsgI	GTGCAG	1 cut(s)	509
Bsh1236I	CGCG	2 cut(s)	77, 572
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	6 cut(s)	50, 221, 351, 1449, 1851, 2075
BshNI	GGYRCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	2024
BsiEI	CGRYCG	1 cut(s)	352
BsiHKAI	GWGCWC	2 cut(s)	1386, 1610
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	7 cut(s)	304, 348, 352, 437, 1281, 2025, 2140
BslFI	GGGAC	3 cut(s)	1309, 2072, 2376
BslI	CCNNNNNNNGG	9 cut(s)	519, 810, 1287, 1378, 1646, 1999, 2024, 2082, 2113
BsmAI	GTCTC	3 cut(s)	1508, 2312, 2441
BsmFI	GGGAC	3 cut(s)	1309, 2072, 2376
BsnI	GGCC	6 cut(s)	50, 221, 351, 1449, 1851, 2075
Bso31I	GGTCTC	2 cut(s)	2312, 2441
BsoBI	CYCGRG	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	1708
Bsp1286I	GDGCHC	2 cut(s)	1386, 1610
Bsp1720I	GCTNAGC	1 cut(s)	2385
Bsp19I	CCATGG	1 cut(s)	2496
BspANI	GGCC	6 cut(s)	50, 221, 351, 1449, 1851, 2075
BspCNI	CTCAG	6 cut(s)	1873, 1903, 1977, 2362, 2377, 2687
BspFNI	CGCG	2 cut(s)	77, 572
BspHI	TCATGA	1 cut(s)	2263
BspLI	GGNNCC	5 cut(s)	97, 207, 302, 2168, 2563
BspMI	ACCTGC	1 cut(s)	1748
BspQI	GCTCTTC	3 cut(s)	116, 1598, 2592
BspT104I	TTCGAA	1 cut(s)	1708
BspT107I	GGYRCC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	2236
BspTNI	GGTCTC	2 cut(s)	2312, 2441
BsrBI	CCGCTC	2 cut(s)	18, 291
BsrDI	GCAATG	3 cut(s)	717, 783, 2661
BsrFI	RCCGGY	2 cut(s)	351, 2024
BsrI	ACTGG	5 cut(s)	815, 1292, 1651, 2636, 2687
BssAI	RCCGGY	2 cut(s)	351, 2024
BssECI	CCNNGG	7 cut(s)	183, 346, 436, 570, 1466, 1537, 2496
BssNI	GRCGYC	2 cut(s)	82, 176
BssT1I	CCWWGG	1 cut(s)	2496
Bst2UI	CCWGG	3 cut(s)	1140, 1467, 1538
Bst4CI	ACNGT	4 cut(s)	847, 1833, 1943, 2205
Bst6I	CTCTTC	7 cut(s)	116, 121, 941, 1371, 1598, 2310, 2592
BstACI	GRCGYC	2 cut(s)	82, 176
BstAFI	CTTAAG	1 cut(s)	2236
BstBAI	YACGTR	2 cut(s)	508, 1445
BstBI	TTCGAA	1 cut(s)	1708
BstC8I	GCNNGC	5 cut(s)	353, 414, 488, 2478, 2571
BstDEI	CTNAG	8 cut(s)	210, 1881, 1911, 1964, 2132, 2349, 2385, 2674
BstDSI	CCRYGG	3 cut(s)	183, 570, 2496
BstEII	GGTNACC	2 cut(s)	1735, 1988
BstENI	CCTNNNNNAGG	1 cut(s)	1376
BstF5I	GGATG	8 cut(s)	102, 147, 737, 1148, 1372, 2305, 2424, 2602
BstFNI	CGCG	2 cut(s)	77, 572
BstH2I	RGCGCY	1 cut(s)	2250
BstHHI	GCGC	1 cut(s)	2249
BstMAI	GTCTC	3 cut(s)	1508, 2312, 2441
BstMCI	CGRYCG	1 cut(s)	352
BstNI	CCWGG	3 cut(s)	1140, 1467, 1538
BstNSI	RCATGY	2 cut(s)	2054, 2573
BstPAI	GACNNNNGTC	1 cut(s)	2197
BstPI	GGTNACC	2 cut(s)	1735, 1988
BstSCI	CCNGG	8 cut(s)	303, 346, 435, 436, 1138, 1279, 1465, 1536
BstUI	CGCG	2 cut(s)	77, 572
BstV1I	GCAGC	7 cut(s)	213, 1481, 1484, 1487, 1490, 1493, 1928
BstX2I	RGATCY	4 cut(s)	309, 357, 604, 2032
BstXI	CCANNNNNNTGG	1 cut(s)	1094
BstYI	RGATCY	4 cut(s)	309, 357, 604, 2032
BstZI	CGGCCG	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	2349
BsuRI	GGCC	6 cut(s)	50, 221, 351, 1449, 1851, 2075
BtgI	CCRYGG	3 cut(s)	183, 570, 2496
BtgZI	GCGATG	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	964
BtsCI	GGATG	8 cut(s)	102, 147, 737, 1148, 1372, 2305, 2424, 2602
BtsIMutI	CAGTG	3 cut(s)	1908, 1948, 1972
BveI	ACCTGC	1 cut(s)	1748
Cac8I	GCNNGC	5 cut(s)	353, 414, 488, 2478, 2571
CaiI	CAGNNNCTG	1 cut(s)	2594
CciI	TCATGA	1 cut(s)	2263
CfoI	GCGC	1 cut(s)	2249
Cfr10I	RCCGGY	2 cut(s)	351, 2024
Cfr13I	GGNCC	5 cut(s)	205, 686, 993, 1127, 1586
Cfr42I	CCGCGG	1 cut(s)	573
Cfr9I	CCCGGG	1 cut(s)	436
CseI	GACGC	2 cut(s)	71, 165
Csp6I	GTAC	2 cut(s)	664, 2690
CspAI	ACCGGT	1 cut(s)	2024
CspCI	CAANNNNNGTGG	2 cut(s)	998, 1033
CviQI	GTAC	2 cut(s)	664, 2690
DdeI	CTNAG	8 cut(s)	210, 1881, 1911, 1964, 2132, 2349, 2385, 2674
DraI	TTTAAA	2 cut(s)	385, 2287
EaeI	YGGCCR	2 cut(s)	48, 349
EagI	CGGCCG	1 cut(s)	349
Eam1104I	CTCTTC	7 cut(s)	116, 121, 941, 1371, 1598, 2310, 2592
EarI	CTCTTC	7 cut(s)	116, 121, 941, 1371, 1598, 2310, 2592
EciI	GGCGGA	1 cut(s)	1910
EclXI	CGGCCG	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	2496
Eco147I	AGGCCT	1 cut(s)	1851
Eco31I	GGTCTC	2 cut(s)	2312, 2441
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	5 cut(s)	205, 686, 993, 1127, 1586
Eco52I	CGGCCG	1 cut(s)	349
Eco57I	CTGAAG	3 cut(s)	545, 2216, 2616
Eco81I	CCTNAGG	1 cut(s)	2349
Eco88I	CYCGRG	1 cut(s)	436
Eco91I	GGTNACC	2 cut(s)	1735, 1988
EcoNI	CCTNNNNNAGG	1 cut(s)	1376
EcoO109I	RGGNCCY	1 cut(s)	205
EcoO65I	GGTNACC	2 cut(s)	1735, 1988
EcoRII	CCWGG	3 cut(s)	1138, 1465, 1536
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	2496
EcoT22I	ATGCAT	2 cut(s)	1243, 1660
ErhI	CCWWGG	1 cut(s)	2496
FalI	AAGNNNNNCTT	4 cut(s)	1401, 1433, 2267, 2299
FaqI	GGGAC	3 cut(s)	1309, 2072, 2376
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	2 cut(s)	744, 1342
FblI	GTMKAC	2 cut(s)	402, 1579
FokI	GGATG	8 cut(s)	89, 134, 724, 1155, 1379, 2312, 2411, 2589
FspBI	CTAG	4 cut(s)	588, 1746, 2447, 2486
GlaI	GCGC	1 cut(s)	2248
GsaI	CCCAGC	3 cut(s)	1602, 1862, 1935
GsuI	CTGGAG	4 cut(s)	20, 1338, 1668, 2670
HaeII	RGCGCY	1 cut(s)	2250
HaeIII	GGCC	6 cut(s)	50, 221, 351, 1449, 1851, 2075
HapII	CCGG	7 cut(s)	304, 348, 352, 437, 1281, 2025, 2140
HgaI	GACGC	2 cut(s)	71, 165
HhaI	GCGC	1 cut(s)	2249
Hin1I	GRCGYC	2 cut(s)	82, 176
Hin6I	GCGC	1 cut(s)	2247
HinP1I	GCGC	1 cut(s)	2247
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	9 cut(s)	21, 64, 677, 1516, 2148, 2267, 2578, 2591, 2645
HpaII	CCGG	7 cut(s)	304, 348, 352, 437, 1281, 2025, 2140
HphI	GGTGA	5 cut(s)	385, 529, 1561, 1747, 2000
Hpy166II	GTNNAC	9 cut(s)	183, 325, 403, 1127, 1552, 1580, 1730, 2629, 2654
Hpy188I	TCNGA	9 cut(s)	564, 597, 609, 682, 1440, 2192, 2334, 2596, 2697
Hpy8I	GTNNAC	9 cut(s)	183, 325, 403, 1127, 1552, 1580, 1730, 2629, 2654
Hpy99I	CGWCG	3 cut(s)	181, 367, 1962
HpyAV	CCTTC	6 cut(s)	244, 513, 677, 1403, 2040, 2498
HpyCH4III	ACNGT	4 cut(s)	847, 1833, 1943, 2205
HpyCH4IV	ACGT	6 cut(s)	507, 963, 1444, 1957, 2365, 2531
HpyF3I	CTNAG	8 cut(s)	210, 1881, 1911, 1964, 2132, 2349, 2385, 2674
HpySE526I	ACGT	6 cut(s)	507, 963, 1444, 1957, 2365, 2531
Hsp92I	GRCGYC	2 cut(s)	82, 176
HspAI	GCGC	1 cut(s)	2247
KroI	GCCGGC	1 cut(s)	351
KroNI	GCCGGC	1 cut(s)	353
Ksp22I	TGATCA	2 cut(s)	744, 1342
KspI	CCGCGG	1 cut(s)	573
LguI	GCTCTTC	3 cut(s)	116, 1598, 2592
Lsp1109I	GCAGC	7 cut(s)	213, 1481, 1484, 1487, 1490, 1493, 1928
LweI	GCATC	7 cut(s)	156, 339, 1060, 1250, 1351, 1645, 2611
MaeI	CTAG	4 cut(s)	588, 1746, 2447, 2486
MaeII	ACGT	6 cut(s)	507, 963, 1444, 1957, 2365, 2531
MbiI	CCGCTC	2 cut(s)	18, 291
MfeI	CAATTG	2 cut(s)	672, 2091
MflI	RGATCY	4 cut(s)	309, 357, 604, 2032
MhlI	GDGCHC	2 cut(s)	1386, 1610
MlyI	GAGTC	3 cut(s)	686, 1510, 2654
MmeI	TCCRAC	3 cut(s)	973, 1852, 2452
Mph1103I	ATGCAT	2 cut(s)	1243, 1660
MroNI	GCCGGC	1 cut(s)	351
MroXI	GAANNNNTTC	2 cut(s)	254, 2279
MseI	TTAA	7 cut(s)	384, 1274, 1392, 1845, 2237, 2286, 2528
MslI	CAYNNNNRTG	2 cut(s)	50, 2298
MspA1I	CMGCKG	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	2236
MspI	CCGG	7 cut(s)	304, 348, 352, 437, 1281, 2025, 2140
MspR9I	CCNGG	8 cut(s)	305, 348, 437, 438, 1140, 1281, 1467, 1538
MunI	CAATTG	2 cut(s)	672, 2091
MvaI	CCWGG	3 cut(s)	1140, 1467, 1538
MvnI	CGCG	2 cut(s)	77, 572
NaeI	GCCGGC	1 cut(s)	353
NciI	CCSGG	5 cut(s)	305, 348, 437, 438, 1281
NcoI	CCATGG	1 cut(s)	2496
NgoMIV	GCCGGC	1 cut(s)	351
NlaIV	GGNNCC	5 cut(s)	97, 207, 302, 2168, 2563
NmeAIII	GCCGAG	3 cut(s)	152, 647, 2590
NmuCI	GTSAC	8 cut(s)	83, 964, 1160, 1735, 1988, 2135, 2199, 2669
NsiI	ATGCAT	2 cut(s)	1243, 1660
NspI	RCATGY	2 cut(s)	2054, 2573
NspV	TTCGAA	1 cut(s)	1708
PaeI	GCATGC	1 cut(s)	2573
PagI	TCATGA	1 cut(s)	2263
PceI	AGGCCT	1 cut(s)	1851
PciSI	GCTCTTC	3 cut(s)	116, 1598, 2592
PdiI	GCCGGC	1 cut(s)	353
PdmI	GAANNNNTTC	2 cut(s)	254, 2279
PfeI	GAWTC	6 cut(s)	21, 64, 2148, 2267, 2578, 2591
PflMI	CCANNNNNTGG	2 cut(s)	1646, 2113
PinAI	ACCGGT	1 cut(s)	2024
PleI	GAGTC	3 cut(s)	685, 1510, 2653
PpsI	GAGTC	3 cut(s)	685, 1510, 2653
Ppu21I	YACGTR	2 cut(s)	508, 1445
PpuMI	RGGWCCY	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	2197
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	3 cut(s)	1138, 1465, 1536
PspEI	GGTNACC	2 cut(s)	1735, 1988
PspFI	CCCAGC	3 cut(s)	1598, 1858, 1931
PspGI	CCWGG	3 cut(s)	1138, 1465, 1536
PspN4I	GGNNCC	5 cut(s)	97, 207, 302, 2168, 2563
PspPI	GGNCC	5 cut(s)	205, 686, 993, 1127, 1586
PspPPI	RGGWCCY	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	2594
PsuI	RGATCY	4 cut(s)	309, 357, 604, 2032
RsaI	GTAC	2 cut(s)	665, 2691
RsaNI	GTAC	2 cut(s)	664, 2690
RseI	CAYNNNNRTG	2 cut(s)	50, 2298
SacII	CCGCGG	1 cut(s)	573
SapI	GCTCTTC	3 cut(s)	116, 1598, 2592
SaqAI	TTAA	7 cut(s)	384, 1274, 1392, 1845, 2237, 2286, 2528
Sau96I	GGNCC	5 cut(s)	205, 686, 993, 1127, 1586
SchI	GAGTC	3 cut(s)	686, 1510, 2654
ScrFI	CCNGG	8 cut(s)	305, 348, 437, 438, 1140, 1281, 1467, 1538
SduI	GDGCHC	2 cut(s)	1386, 1610
SfaNI	GCATC	7 cut(s)	156, 339, 1060, 1250, 1351, 1645, 2611
Sfr303I	CCGCGG	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	1708
SgrBI	CCGCGG	1 cut(s)	573
SinI	GGWCC	5 cut(s)	205, 686, 993, 1127, 1586
SmaI	CCCGGG	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	50, 2298
SmlI	CTYRAG	1 cut(s)	2236
SmoI	CTYRAG	1 cut(s)	2236
SphI	GCATGC	1 cut(s)	2573
SseBI	AGGCCT	1 cut(s)	1851
SspI	AATATT	1 cut(s)	1705
SspMI	CTAG	4 cut(s)	588, 1746, 2447, 2486
StuI	AGGCCT	1 cut(s)	1851
StyD4I	CCNGG	8 cut(s)	303, 346, 435, 436, 1138, 1279, 1465, 1536
StyI	CCWWGG	1 cut(s)	2496
TaaI	ACNGT	4 cut(s)	847, 1833, 1943, 2205
TaiI	ACGT	6 cut(s)	510, 966, 1447, 1960, 2368, 2534
TaqI	TCGA	4 cut(s)	365, 769, 1221, 1708
TaqII	GACCGA	2 cut(s)	2336, 2423
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	3 cut(s)	294, 572, 2495
TfiI	GAWTC	6 cut(s)	21, 64, 2148, 2267, 2578, 2591
Tru1I	TTAA	7 cut(s)	384, 1274, 1392, 1845, 2237, 2286, 2528
Tru9I	TTAA	7 cut(s)	384, 1274, 1392, 1845, 2237, 2286, 2528
TscAI	CASTG	3 cut(s)	1915, 1948, 1972
TseFI	GTSAC	8 cut(s)	83, 964, 1160, 1735, 1988, 2135, 2199, 2669
TseI	GCWGC	7 cut(s)	226, 1494, 1497, 1500, 1503, 1506, 1916
Tsp45I	GTSAC	8 cut(s)	83, 964, 1160, 1735, 1988, 2135, 2199, 2669
TspGWI	ACGGA	2 cut(s)	1608, 2159
TspMI	CCCGGG	1 cut(s)	436
TspRI	CASTG	3 cut(s)	1915, 1948, 1972
Van91I	CCANNNNNTGG	2 cut(s)	1646, 2113
Vha464I	CTTAAG	1 cut(s)	2236
VpaK11BI	GGWCC	5 cut(s)	205, 686, 993, 1127, 1586
XagI	CCTNNNNNAGG	1 cut(s)	1376
XapI	RAATTY	6 cut(s)	524, 545, 552, 638, 2374, 2408
XbaI	TCTAGA	1 cut(s)	2446
XceI	RCATGY	2 cut(s)	2054, 2573
XmaI	CCCGGG	1 cut(s)	436
XmiI	GTMKAC	2 cut(s)	402, 1579
XmnI	GAANNNNTTC	2 cut(s)	254, 2279
XspI	CTAG	4 cut(s)	588, 1746, 2447, 2486
Zsp2I	ATGCAT	2 cut(s)	1243, 1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.